Wall clock time and date at job start Tue Mar 31 2020 19:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53146 * 1 3 3 C 1.54934 * 106.67009 * 2 1 4 4 C 1.51932 * 110.80941 * 116.38275 * 2 1 3 5 5 C 1.51837 * 113.73989 * 78.35969 * 4 2 1 6 6 H 1.11379 * 106.89733 * 168.65201 * 5 4 2 7 7 N 1.45868 * 112.13785 * 284.84698 * 5 4 2 8 8 C 1.34774 * 120.00188 * 286.59210 * 7 5 4 9 9 O 1.21278 * 120.00250 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99756 * 180.02562 * 8 7 5 11 11 C 1.47203 * 109.46957 * 180.02562 * 10 8 7 12 12 N 7.01351 * 60.00759 * 117.24557 * 2 1 3 13 13 C 1.51846 * 111.87275 * 51.96443 * 5 4 2 14 14 C 1.52059 * 113.49753 * 307.39527 * 13 5 4 15 15 C 1.53038 * 110.97766 * 282.78880 * 14 13 5 16 16 C 1.54919 * 107.17242 * 166.60513 * 14 13 5 17 17 N 1.46503 * 109.46783 * 58.96164 * 16 14 13 18 18 C 1.34775 * 120.00104 * 179.97438 * 17 16 14 19 19 O 1.21684 * 119.99853 * 0.02562 * 18 17 16 20 20 C 1.46371 * 120.00288 * 179.97438 * 18 17 16 21 21 H 1.08004 * 120.00084 * 6.00980 * 20 18 17 22 22 C 1.40044 * 120.00584 * 186.01129 * 20 18 17 23 23 N 1.30664 * 120.00815 * 184.70708 * 22 20 18 24 24 Si 1.86803 * 119.99647 * 4.70773 * 22 20 18 25 25 H 1.48499 * 109.47332 * 180.02562 * 24 22 20 26 26 H 1.48496 * 109.47001 * 300.00192 * 24 22 20 27 27 H 1.48502 * 109.47064 * 59.99818 * 24 22 20 28 28 C 1.51616 * 111.11737 * 243.27734 * 2 1 3 29 29 H 1.09003 * 109.46514 * 303.61696 * 1 2 3 30 30 H 1.08993 * 109.47189 * 63.61458 * 1 2 3 31 31 H 1.09000 * 109.46878 * 183.61837 * 1 2 3 32 32 H 1.08999 * 109.46788 * 178.75172 * 3 2 1 33 33 H 1.08997 * 109.47212 * 298.75018 * 3 2 1 34 34 H 1.08998 * 109.47121 * 58.74992 * 3 2 1 35 35 H 1.09912 * 108.95242 * 316.51616 * 4 2 1 36 36 H 1.09899 * 108.95662 * 200.22091 * 4 2 1 37 37 H 0.97004 * 119.99465 * 106.60100 * 7 5 4 38 38 H 1.08998 * 109.47496 * 300.00712 * 10 8 7 39 39 H 1.08998 * 109.47046 * 60.00844 * 10 8 7 40 40 H 1.09859 * 109.08232 * 185.74153 * 13 5 4 41 41 H 1.09847 * 109.11219 * 69.10429 * 13 5 4 42 42 H 1.08999 * 109.46903 * 310.96805 * 15 14 13 43 43 H 1.09001 * 109.47157 * 70.96994 * 15 14 13 44 44 H 1.09002 * 109.47010 * 190.96826 * 15 14 13 45 45 H 1.08990 * 109.47561 * 298.96005 * 16 14 13 46 46 H 1.09003 * 109.47232 * 178.95396 * 16 14 13 47 47 H 0.97000 * 120.00323 * 359.97438 * 17 16 14 48 48 H 0.97003 * 119.99844 * 354.91610 * 23 22 20 49 49 H 1.10288 * 108.62196 * 155.64308 * 28 2 1 50 50 H 1.10257 * 108.67683 * 40.84788 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5315 0.0000 0.0000 3 6 1.9759 1.4842 0.0000 4 6 2.0712 -0.6311 1.2723 5 6 2.0262 -2.1488 1.2685 6 1 2.6278 -2.4927 2.1405 7 7 0.6753 -2.6592 1.4742 8 6 0.1076 -2.5906 2.6946 9 8 0.7197 -2.1041 3.6218 10 6 -1.2878 -3.1185 2.9072 11 6 -1.6756 -2.9276 4.3144 12 7 -1.9745 -2.7809 5.4004 13 6 2.6773 -2.7309 0.0264 14 6 2.1351 -2.1513 -1.2706 15 6 0.7722 -2.7568 -1.6137 16 6 3.1073 -2.5717 -2.4012 17 7 3.1864 -4.0335 -2.4587 18 6 3.9770 -4.6301 -3.3727 19 8 4.6255 -3.9547 -4.1498 20 6 4.0564 -6.0906 -3.4299 21 1 3.4102 -6.6914 -2.8070 22 6 4.9703 -6.7090 -4.2922 23 7 4.9784 -8.0102 -4.4117 24 14 6.1778 -5.6737 -5.2717 25 1 7.0299 -6.5611 -6.1034 26 1 5.4296 -4.7402 -6.1514 27 1 7.0335 -4.8966 -4.3394 28 6 2.0777 -0.6360 -1.2633 29 1 -0.3632 0.5690 0.8558 30 1 -0.3633 0.4567 -0.9205 31 1 -0.3633 -1.0256 0.0649 32 1 3.0644 1.5375 0.0224 33 1 1.6066 1.9741 -0.9009 34 1 1.5694 1.9852 0.8785 35 1 1.4930 -0.2576 2.1292 36 1 3.1097 -0.3036 1.4205 37 1 0.1857 -3.0481 0.7326 38 1 -1.9824 -2.5794 2.2630 39 1 -1.3156 -4.1805 2.6633 40 1 2.5291 -3.8195 0.0198 41 1 3.7605 -2.5535 0.0713 42 1 0.8273 -3.8427 -1.5370 43 1 0.0220 -2.3810 -0.9179 44 1 0.4964 -2.4780 -2.6308 45 1 4.0971 -2.1620 -2.2003 46 1 2.7426 -2.1898 -3.3547 47 1 2.6697 -4.5719 -1.8390 48 1 4.4031 -8.5524 -3.8496 49 1 3.0928 -0.2445 -1.4442 50 1 1.4678 -0.3019 -2.1189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005915069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:31 Heat of formation + Delta-G solvation = -88.606570 kcal Electronic energy + Delta-G solvation = -30315.727017 eV Core-core repulsion = 26341.264108 eV Total energy + Delta-G solvation = -3974.462909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.01794 -39.43360 -37.81262 -36.73352 -35.47436 -34.96560 -32.91624 -32.24021 -31.79062 -30.04549 -27.85715 -26.88312 -26.80562 -26.57500 -24.58761 -22.78726 -21.12345 -20.18092 -19.49768 -18.69096 -18.04764 -17.77037 -17.60912 -16.28322 -15.89896 -15.56237 -15.21945 -15.07439 -14.60419 -14.50294 -14.29783 -14.12054 -13.89466 -13.66800 -13.46255 -13.34084 -13.04609 -12.92391 -12.88237 -12.69757 -12.57765 -12.37567 -12.15184 -12.06984 -11.90365 -11.73962 -11.66285 -11.61161 -11.47102 -11.18146 -10.79837 -10.51270 -10.45081 -10.32566 -10.23829 -10.20970 -9.94997 -9.25794 -9.22736 -8.99746 -7.96745 -7.93085 -7.01011 -4.95284 2.13652 2.15550 2.46144 2.98138 3.50950 3.56697 3.67472 4.05445 4.25426 4.32189 4.33851 4.42606 4.47740 4.48819 4.64420 4.66102 4.68728 4.79866 4.86546 4.92254 5.00258 5.11186 5.23043 5.32541 5.42005 5.45207 5.47958 5.53449 5.59013 5.62846 5.70688 5.75754 5.77770 5.82837 5.85378 5.94930 6.07096 6.08680 6.15127 6.19728 6.22127 6.31535 6.36862 6.41927 7.04953 7.23101 7.46035 7.66451 7.72658 7.79837 8.07426 8.81427 9.03958 10.04428 10.31359 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.002987 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.562793 B = 9372.218655 C =10699.415127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C -0.148 4.148 4 C -0.115 4.115 5 C 0.154 3.846 6 H 0.076 0.924 7 N -0.712 5.712 8 C 0.518 3.482 9 O -0.529 6.529 10 C -0.048 4.048 11 C 0.219 3.781 12 N -0.415 5.415 13 C -0.113 4.113 14 C -0.061 4.061 15 C -0.147 4.147 16 C 0.134 3.866 17 N -0.754 5.754 18 C 0.551 3.449 19 O -0.619 6.619 20 C -0.599 4.599 21 H 0.068 0.932 22 C 0.060 3.940 23 N -0.834 5.834 24 Si 1.131 2.869 25 H -0.324 1.324 26 H -0.282 1.282 27 H -0.292 1.292 28 C -0.095 4.095 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.402 0.598 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.385 0.615 48 H 0.277 0.723 49 H 0.064 0.936 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 13.117 10.016 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.051 4.051 3 C -0.205 4.205 4 C -0.154 4.154 5 C 0.050 3.950 6 H 0.094 0.906 7 N -0.366 5.366 8 C 0.302 3.698 9 O -0.405 6.405 10 C -0.090 4.090 11 C -0.100 4.100 12 N -0.092 5.092 13 C -0.151 4.151 14 C -0.062 4.062 15 C -0.204 4.204 16 C 0.009 3.991 17 N -0.407 5.407 18 C 0.359 3.641 19 O -0.512 6.512 20 C -0.636 4.636 21 H 0.087 0.913 22 C -0.157 4.157 23 N -0.462 5.462 24 Si 0.964 3.036 25 H -0.255 1.255 26 H -0.209 1.209 27 H -0.219 1.219 28 C -0.132 4.132 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.239 0.761 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.218 0.782 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.719 14.033 10.704 21.186 hybrid contribution -1.732 -0.504 0.763 1.959 sum -13.451 13.529 11.466 22.259 Atomic orbital electron populations 1.22063 0.94788 1.01652 1.01298 1.20222 0.95379 0.94988 0.94521 1.22438 1.01161 0.95448 1.01451 1.21636 1.02274 0.94144 0.97326 1.20531 0.81954 0.93694 0.98797 0.90562 1.46032 1.17836 1.62050 1.10639 1.19963 0.87269 0.79448 0.83155 1.90796 1.63833 1.44424 1.41450 1.19191 0.96433 1.06430 0.86982 1.28035 0.93774 0.93927 0.94262 1.81212 1.08465 1.07817 1.11666 1.21574 1.01037 1.00623 0.91867 1.20524 0.95881 0.94993 0.94793 1.22125 0.95689 1.00833 1.01799 1.21634 0.97469 0.83478 0.96487 1.45786 1.51100 1.04704 1.39090 1.18433 0.77700 0.89235 0.78698 1.90146 1.49931 1.66211 1.44934 1.22026 1.24050 0.89876 1.27603 0.91345 1.27140 0.97216 0.96509 0.94879 1.70659 1.36053 1.05664 1.33813 0.82356 0.73798 0.71472 0.75956 1.25539 1.20890 1.21933 1.21226 1.02037 0.93273 0.96708 0.93151 0.92768 0.92345 0.92671 0.92737 0.92947 0.91189 0.91048 0.76094 0.84392 0.84209 0.90792 0.89733 0.92131 0.92658 0.91917 0.93010 0.92966 0.78190 0.91257 0.91777 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 7.90 37.23 0.29 -0.66 16 2 C -0.05 -0.39 0.74 -154.66 -0.11 -0.51 16 3 C -0.15 -1.13 7.93 38.18 0.30 -0.83 16 4 C -0.12 -0.99 4.17 -27.86 -0.12 -1.11 16 5 C 0.15 1.31 2.28 -69.45 -0.16 1.15 16 6 H 0.08 0.78 7.82 -50.55 -0.40 0.38 16 7 N -0.71 -4.55 3.79 -54.48 -0.21 -4.75 16 8 C 0.52 3.95 7.55 -10.99 -0.08 3.86 16 9 O -0.53 -6.61 14.97 5.56 0.08 -6.53 16 10 C -0.05 -0.18 6.19 -30.67 -0.19 -0.37 16 11 C 0.22 1.94 14.67 -20.76 -0.30 1.63 16 12 N -0.42 -5.15 18.54 42.15 0.78 -4.37 16 13 C -0.11 -1.08 3.89 -27.80 -0.11 -1.19 16 14 C -0.06 -0.61 0.55 -154.64 -0.09 -0.69 16 15 C -0.15 -1.25 7.15 37.18 0.27 -0.99 16 16 C 0.13 2.05 4.11 -3.03 -0.01 2.03 16 17 N -0.75 -14.04 4.94 -60.69 -0.30 -14.34 16 18 C 0.55 13.84 7.57 -12.99 -0.10 13.74 16 19 O -0.62 -17.20 12.07 5.20 0.06 -17.14 16 20 C -0.60 -16.22 9.96 -35.63 -0.36 -16.58 16 21 H 0.07 1.81 8.05 -52.48 -0.42 1.39 16 22 C 0.06 1.69 5.52 -17.37 -0.10 1.60 16 23 N -0.83 -23.65 13.64 55.55 0.76 -22.89 16 24 Si 1.13 29.48 25.99 -169.99 -4.42 25.07 16 25 H -0.32 -8.16 7.11 56.52 0.40 -7.76 16 26 H -0.28 -7.57 6.78 56.52 0.38 -7.19 16 27 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 28 C -0.09 -0.84 3.44 -28.12 -0.10 -0.94 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.36 8.03 -51.93 -0.42 -0.06 16 31 H 0.06 0.33 4.30 -51.93 -0.22 0.11 16 32 H 0.05 0.43 7.99 -51.93 -0.41 0.02 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.69 7.16 -51.41 -0.37 0.33 16 36 H 0.07 0.64 7.96 -51.42 -0.41 0.23 16 37 H 0.40 1.75 5.72 -40.82 -0.23 1.51 16 38 H 0.14 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.14 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.07 0.73 6.86 -51.44 -0.35 0.38 16 41 H 0.08 0.92 7.99 -51.45 -0.41 0.51 16 42 H 0.06 0.54 6.76 -51.93 -0.35 0.19 16 43 H 0.05 0.32 3.79 -51.93 -0.20 0.13 16 44 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 45 H 0.05 0.86 7.99 -51.93 -0.41 0.45 16 46 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 47 H 0.38 6.22 6.02 -40.82 -0.25 5.97 16 48 H 0.28 7.50 8.72 -40.82 -0.36 7.14 16 49 H 0.06 0.63 7.55 -51.19 -0.39 0.24 16 50 H 0.06 0.57 7.89 -51.21 -0.40 0.16 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -36.12 386.07 -6.15 -42.27 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -7.77 Total: -3.29 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.96 Total: 0.15 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 1.03 Total: -46.35 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.15 Total: -23.67 kcal Atomic # 14 Polarization: 29.48 SS G_CDS: -4.42 Total: 25.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.12 -6.15 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005915069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.335 kcal (2) G-P(sol) polarization free energy of solvation -36.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds