Wall clock time and date at job start Tue Mar 31 2020 19:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53146 * 1 3 3 C 1.54934 * 106.67009 * 2 1 4 4 C 1.51932 * 110.80941 * 116.38275 * 2 1 3 5 5 C 1.51837 * 113.73989 * 78.35969 * 4 2 1 6 6 H 1.11379 * 106.89733 * 168.65201 * 5 4 2 7 7 N 1.45868 * 112.13785 * 284.84698 * 5 4 2 8 8 C 1.34774 * 120.00188 * 286.59210 * 7 5 4 9 9 O 1.21278 * 120.00250 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99756 * 180.02562 * 8 7 5 11 11 C 1.47203 * 109.46957 * 180.02562 * 10 8 7 12 12 N 7.01351 * 60.00759 * 117.24557 * 2 1 3 13 13 C 1.51846 * 111.87275 * 51.96443 * 5 4 2 14 14 C 1.52059 * 113.49753 * 307.39527 * 13 5 4 15 15 C 1.53038 * 110.97766 * 282.78880 * 14 13 5 16 16 C 1.54919 * 107.17242 * 166.60513 * 14 13 5 17 17 N 1.46503 * 109.46783 * 58.96164 * 16 14 13 18 18 C 1.34775 * 120.00104 * 179.97438 * 17 16 14 19 19 O 1.21684 * 119.99853 * 0.02562 * 18 17 16 20 20 C 1.46371 * 120.00288 * 179.97438 * 18 17 16 21 21 H 1.08004 * 120.00084 * 6.00980 * 20 18 17 22 22 C 1.40044 * 120.00584 * 186.01129 * 20 18 17 23 23 N 1.30664 * 120.00815 * 184.70708 * 22 20 18 24 24 Si 1.86803 * 119.99647 * 4.70773 * 22 20 18 25 25 H 1.48499 * 109.47332 * 180.02562 * 24 22 20 26 26 H 1.48496 * 109.47001 * 300.00192 * 24 22 20 27 27 H 1.48502 * 109.47064 * 59.99818 * 24 22 20 28 28 C 1.51616 * 111.11737 * 243.27734 * 2 1 3 29 29 H 1.09003 * 109.46514 * 303.61696 * 1 2 3 30 30 H 1.08993 * 109.47189 * 63.61458 * 1 2 3 31 31 H 1.09000 * 109.46878 * 183.61837 * 1 2 3 32 32 H 1.08999 * 109.46788 * 178.75172 * 3 2 1 33 33 H 1.08997 * 109.47212 * 298.75018 * 3 2 1 34 34 H 1.08998 * 109.47121 * 58.74992 * 3 2 1 35 35 H 1.09912 * 108.95242 * 316.51616 * 4 2 1 36 36 H 1.09899 * 108.95662 * 200.22091 * 4 2 1 37 37 H 0.97004 * 119.99465 * 106.60100 * 7 5 4 38 38 H 1.08998 * 109.47496 * 300.00712 * 10 8 7 39 39 H 1.08998 * 109.47046 * 60.00844 * 10 8 7 40 40 H 1.09859 * 109.08232 * 185.74153 * 13 5 4 41 41 H 1.09847 * 109.11219 * 69.10429 * 13 5 4 42 42 H 1.08999 * 109.46903 * 310.96805 * 15 14 13 43 43 H 1.09001 * 109.47157 * 70.96994 * 15 14 13 44 44 H 1.09002 * 109.47010 * 190.96826 * 15 14 13 45 45 H 1.08990 * 109.47561 * 298.96005 * 16 14 13 46 46 H 1.09003 * 109.47232 * 178.95396 * 16 14 13 47 47 H 0.97000 * 120.00323 * 359.97438 * 17 16 14 48 48 H 0.97003 * 119.99844 * 354.91610 * 23 22 20 49 49 H 1.10288 * 108.62196 * 155.64308 * 28 2 1 50 50 H 1.10257 * 108.67683 * 40.84788 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5315 0.0000 0.0000 3 6 1.9759 1.4842 0.0000 4 6 2.0712 -0.6311 1.2723 5 6 2.0262 -2.1488 1.2685 6 1 2.6278 -2.4927 2.1405 7 7 0.6753 -2.6592 1.4742 8 6 0.1076 -2.5906 2.6946 9 8 0.7197 -2.1041 3.6218 10 6 -1.2878 -3.1185 2.9072 11 6 -1.6756 -2.9276 4.3144 12 7 -1.9745 -2.7809 5.4004 13 6 2.6773 -2.7309 0.0264 14 6 2.1351 -2.1513 -1.2706 15 6 0.7722 -2.7568 -1.6137 16 6 3.1073 -2.5717 -2.4012 17 7 3.1864 -4.0335 -2.4587 18 6 3.9770 -4.6301 -3.3727 19 8 4.6255 -3.9547 -4.1498 20 6 4.0564 -6.0906 -3.4299 21 1 3.4102 -6.6914 -2.8070 22 6 4.9703 -6.7090 -4.2922 23 7 4.9784 -8.0102 -4.4117 24 14 6.1778 -5.6737 -5.2717 25 1 7.0299 -6.5611 -6.1034 26 1 5.4296 -4.7402 -6.1514 27 1 7.0335 -4.8966 -4.3394 28 6 2.0777 -0.6360 -1.2633 29 1 -0.3632 0.5690 0.8558 30 1 -0.3633 0.4567 -0.9205 31 1 -0.3633 -1.0256 0.0649 32 1 3.0644 1.5375 0.0224 33 1 1.6066 1.9741 -0.9009 34 1 1.5694 1.9852 0.8785 35 1 1.4930 -0.2576 2.1292 36 1 3.1097 -0.3036 1.4205 37 1 0.1857 -3.0481 0.7326 38 1 -1.9824 -2.5794 2.2630 39 1 -1.3156 -4.1805 2.6633 40 1 2.5291 -3.8195 0.0198 41 1 3.7605 -2.5535 0.0713 42 1 0.8273 -3.8427 -1.5370 43 1 0.0220 -2.3810 -0.9179 44 1 0.4964 -2.4780 -2.6308 45 1 4.0971 -2.1620 -2.2003 46 1 2.7426 -2.1898 -3.3547 47 1 2.6697 -4.5719 -1.8390 48 1 4.4031 -8.5524 -3.8496 49 1 3.0928 -0.2445 -1.4442 50 1 1.4678 -0.3019 -2.1189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005915069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:30 Heat of formation + Delta-G solvation = -114.197912 kcal Electronic energy + Delta-G solvation = -30316.836741 eV Core-core repulsion = 26341.264108 eV Total energy + Delta-G solvation = -3975.572633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.77057 -40.32825 -39.47596 -37.48111 -36.61155 -35.71011 -35.03421 -33.46061 -32.64880 -30.62459 -28.88011 -28.33830 -27.49149 -27.29884 -26.04387 -23.52979 -21.96198 -21.67876 -20.62939 -20.05915 -19.29101 -18.47110 -18.16270 -17.42653 -16.86260 -16.67674 -16.33713 -16.21903 -15.71727 -15.58627 -15.27128 -15.19104 -15.06803 -14.65493 -14.47843 -14.38236 -14.15693 -14.12551 -13.98187 -13.73561 -13.59269 -13.46372 -13.00233 -12.95014 -12.69106 -12.53749 -12.48485 -12.41554 -12.38617 -12.29157 -12.18177 -11.91196 -11.53888 -11.34972 -11.24767 -11.16030 -11.11805 -10.93155 -10.78589 -10.04965 -9.92343 -9.64153 -9.14605 -7.07796 1.46310 1.51372 1.57337 1.61278 1.82529 1.99507 2.25884 2.39422 2.42844 2.99665 3.02165 3.35879 3.51212 3.66192 3.71736 3.84328 4.03234 4.10419 4.12087 4.23950 4.37032 4.48843 4.51068 4.54286 4.60140 4.65269 4.74385 4.84249 4.86810 4.92716 4.92937 4.97025 5.04462 5.07217 5.15517 5.17712 5.19712 5.23825 5.40616 5.44594 5.46146 5.52634 5.57403 5.60272 5.63707 5.69121 5.96341 6.11110 6.48646 6.65532 6.69343 7.25211 7.26200 8.08385 8.17131 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.002987 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.562793 B = 9372.218655 C =10699.415127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.148 4.148 4 C -0.110 4.110 5 C 0.165 3.835 6 H 0.058 0.942 7 N -0.699 5.699 8 C 0.519 3.481 9 O -0.583 6.583 10 C -0.040 4.040 11 C 0.243 3.757 12 N -0.491 5.491 13 C -0.108 4.108 14 C -0.042 4.042 15 C -0.148 4.148 16 C 0.132 3.868 17 N -0.734 5.734 18 C 0.548 3.452 19 O -0.647 6.647 20 C -0.614 4.614 21 H 0.070 0.930 22 C 0.028 3.972 23 N -0.852 5.852 24 Si 1.161 2.839 25 H -0.312 1.312 26 H -0.296 1.296 27 H -0.297 1.297 28 C -0.092 4.092 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.416 0.584 38 H 0.187 0.813 39 H 0.184 0.816 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.042 0.958 47 H 0.400 0.600 48 H 0.278 0.722 49 H 0.051 0.949 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.513 13.526 9.729 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 C -0.205 4.205 4 C -0.149 4.149 5 C 0.060 3.940 6 H 0.076 0.924 7 N -0.353 5.353 8 C 0.305 3.695 9 O -0.463 6.463 10 C -0.081 4.081 11 C -0.075 4.075 12 N -0.168 5.168 13 C -0.146 4.146 14 C -0.043 4.043 15 C -0.205 4.205 16 C 0.008 3.992 17 N -0.385 5.385 18 C 0.354 3.646 19 O -0.542 6.542 20 C -0.651 4.651 21 H 0.088 0.912 22 C -0.186 4.186 23 N -0.481 5.481 24 Si 0.993 3.007 25 H -0.243 1.243 26 H -0.225 1.225 27 H -0.225 1.225 28 C -0.130 4.130 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.204 0.796 39 H 0.201 0.799 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.236 0.764 48 H 0.089 0.911 49 H 0.070 0.930 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.975 14.424 10.419 22.626 hybrid contribution -1.030 -0.562 0.857 1.453 sum -15.006 13.862 11.276 23.334 Atomic orbital electron populations 1.22058 0.93284 1.02624 1.01720 1.20149 0.96493 0.94702 0.93131 1.22435 1.00807 0.95436 1.01823 1.21579 1.01709 0.94131 0.97451 1.20247 0.82959 0.93543 0.97239 0.92434 1.45845 1.16904 1.61531 1.11029 1.20551 0.88309 0.78317 0.82371 1.90798 1.65513 1.46887 1.43096 1.19580 0.94380 1.09540 0.84605 1.28942 0.91833 0.91727 0.95014 1.81231 1.10961 1.10472 1.14133 1.21496 1.00284 1.00709 0.92137 1.20432 0.95445 0.95808 0.92604 1.22147 0.95086 1.00853 1.02413 1.21842 0.98240 0.80876 0.98263 1.45471 1.49226 1.06476 1.37332 1.18341 0.78171 0.88815 0.79303 1.90125 1.51146 1.66669 1.46267 1.22216 1.24021 0.91211 1.27621 0.91211 1.27688 0.98226 0.96936 0.95753 1.70660 1.36906 1.05888 1.34648 0.81929 0.72996 0.70564 0.75172 1.24268 1.22454 1.22539 1.21203 1.01728 0.92310 0.97727 0.93114 0.92105 0.90988 0.93350 0.92164 0.92758 0.92161 0.91952 0.74400 0.79580 0.79883 0.90636 0.91384 0.92057 0.89380 0.92505 0.94660 0.93979 0.76428 0.91112 0.92997 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.90 72.03 0.57 -0.79 16 2 C -0.04 -0.59 0.74 -52.28 -0.04 -0.63 16 3 C -0.15 -2.04 7.93 72.64 0.58 -1.46 16 4 C -0.11 -1.75 4.17 29.86 0.12 -1.62 16 5 C 0.17 2.52 2.28 44.35 0.10 2.62 16 6 H 0.06 1.14 7.82 -1.10 -0.01 1.14 16 7 N -0.70 -6.54 3.79 -444.68 -1.69 -8.23 16 8 C 0.52 6.33 7.55 87.66 0.66 6.99 16 9 O -0.58 -13.94 14.97 -3.02 -0.05 -13.99 16 10 C -0.04 -0.12 6.19 28.04 0.17 0.05 16 11 C 0.24 3.77 14.67 89.44 1.31 5.09 16 12 N -0.49 -11.99 18.54 20.01 0.37 -11.62 16 13 C -0.11 -1.88 3.89 29.90 0.12 -1.77 16 14 C -0.04 -0.75 0.55 -52.27 -0.03 -0.78 16 15 C -0.15 -1.96 7.15 71.99 0.51 -1.45 16 16 C 0.13 3.88 4.11 87.03 0.36 4.24 16 17 N -0.73 -26.34 4.94 -464.16 -2.29 -28.63 16 18 C 0.55 27.17 7.57 86.36 0.65 27.82 16 19 O -0.65 -35.84 12.07 -4.30 -0.05 -35.89 16 20 C -0.61 -32.91 9.96 24.83 0.25 -32.67 16 21 H 0.07 3.64 8.05 -2.91 -0.02 3.61 16 22 C 0.03 1.59 5.52 85.30 0.47 2.06 16 23 N -0.85 -48.03 13.64 21.83 0.30 -47.73 16 24 Si 1.16 59.94 25.99 68.60 1.78 61.72 16 25 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 26 H -0.30 -15.90 6.78 99.48 0.67 -15.22 16 27 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 28 C -0.09 -1.45 3.44 29.70 0.10 -1.35 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.56 8.03 -2.39 -0.02 0.54 16 31 H 0.07 0.46 4.30 -2.39 -0.01 0.45 16 32 H 0.05 0.72 7.99 -2.39 -0.02 0.71 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 1.12 7.16 -1.90 -0.01 1.11 16 36 H 0.06 1.10 7.96 -1.91 -0.02 1.08 16 37 H 0.42 1.54 5.72 -92.70 -0.53 1.01 16 38 H 0.19 -1.09 8.14 -2.39 -0.02 -1.11 16 39 H 0.18 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H 0.08 1.31 6.86 -1.93 -0.01 1.29 16 41 H 0.07 1.45 7.99 -1.93 -0.02 1.43 16 42 H 0.06 0.84 6.76 -2.39 -0.02 0.82 16 43 H 0.09 0.58 3.79 -2.39 -0.01 0.57 16 44 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 45 H 0.04 1.17 7.99 -2.39 -0.02 1.15 16 46 H 0.04 1.35 8.13 -2.39 -0.02 1.33 16 47 H 0.40 12.06 6.02 -92.71 -0.56 11.50 16 48 H 0.28 15.01 8.72 -92.71 -0.81 14.20 16 49 H 0.05 0.97 7.55 -1.70 -0.01 0.96 16 50 H 0.07 1.07 7.89 -1.71 -0.01 1.06 16 Total: -1.00 -81.88 386.07 4.13 -77.75 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -0.15 Total: 0.26 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 5.91 Total: 6.35 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -3.31 Total: -96.20 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -0.10 Total: -49.88 kcal Atomic # 14 Polarization: 59.94 SS G_CDS: 1.78 Total: 61.72 kcal Total: -81.88 4.13 -77.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005915069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.450 kcal (2) G-P(sol) polarization free energy of solvation -81.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds