Wall clock time and date at job start Tue Mar 31 2020 20:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30836 * 125.89680 * 2 1 4 4 N 1.40083 * 108.20336 * 180.25775 * 3 2 1 5 5 C 1.46501 * 126.03701 * 179.69748 * 4 3 2 6 6 C 1.50702 * 109.47090 * 270.02164 * 5 4 3 7 7 H 1.08000 * 119.99845 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99901 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00226 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99880 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46867 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46973 * 119.99727 * 10 8 6 13 13 H 1.48496 * 109.47057 * 239.99775 * 10 8 6 14 14 C 1.34945 * 107.92443 * 359.71472 * 4 3 2 15 15 C 1.50701 * 126.12574 * 179.97438 * 14 4 3 16 16 C 1.35315 * 107.75035 * 0.02562 * 14 4 3 17 17 C 1.50697 * 126.04441 * 180.02562 * 16 14 4 18 18 C 1.52997 * 109.47466 * 89.99742 * 17 16 14 19 19 C 1.50701 * 109.47212 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99781 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99622 * 180.02562 * 19 18 17 22 22 C 1.46505 * 119.99622 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47212 * 179.97438 * 22 21 19 24 24 H 1.09005 * 109.82538 * 305.70306 * 23 22 21 25 25 C 1.54385 * 109.83407 * 184.81265 * 23 22 21 26 26 C 1.55446 * 102.18803 * 219.18238 * 25 23 22 27 27 C 1.54950 * 100.98975 * 34.03637 * 26 25 23 28 28 O 1.43245 * 109.83212 * 66.58387 * 23 22 21 29 29 H 1.09004 * 109.47223 * 270.21331 * 1 2 3 30 30 H 1.09001 * 109.47273 * 30.21669 * 1 2 3 31 31 H 1.09004 * 109.46775 * 150.21650 * 1 2 3 32 32 H 1.08997 * 109.47127 * 30.02274 * 5 4 3 33 33 H 1.09008 * 109.47156 * 150.02259 * 5 4 3 34 34 H 0.97000 * 119.99861 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47738 * 270.02616 * 15 14 4 36 36 H 1.09003 * 109.47129 * 30.02976 * 15 14 4 37 37 H 1.09009 * 109.47206 * 150.02532 * 15 14 4 38 38 H 1.09001 * 109.46613 * 329.99638 * 17 16 14 39 39 H 1.09002 * 109.47120 * 209.99989 * 17 16 14 40 40 H 1.09001 * 109.46832 * 60.00036 * 18 17 16 41 41 H 1.09002 * 109.47153 * 300.00227 * 18 17 16 42 42 H 0.96996 * 120.00772 * 359.97438 * 21 19 18 43 43 H 1.09002 * 109.47068 * 299.99729 * 22 21 19 44 44 H 1.09001 * 109.47372 * 59.99816 * 22 21 19 45 45 H 1.09000 * 110.84670 * 337.32271 * 25 23 22 46 46 H 1.08998 * 110.84705 * 100.93882 * 25 23 22 47 47 H 1.09001 * 111.06022 * 276.12476 * 26 25 23 48 48 H 1.08996 * 111.18295 * 152.00684 * 26 25 23 49 49 H 1.09001 * 110.30904 * 204.68976 * 27 26 25 50 50 H 1.09000 * 110.30445 * 82.52001 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 6 4.7898 1.5008 -0.0143 6 6 5.1871 1.7950 -1.4379 7 1 4.6165 1.3784 -2.2548 8 6 6.2788 2.5960 -1.6975 9 7 6.9740 3.1028 -0.7027 10 14 6.7708 2.9612 -3.4622 11 1 5.8342 2.2764 -4.3890 12 1 6.7179 4.4265 -3.6976 13 1 8.1516 2.4707 -3.7027 14 6 3.6142 -0.7153 -0.0032 15 6 4.8350 -1.5989 -0.0082 16 6 2.3271 -1.1330 0.0038 17 6 1.8599 -2.5657 0.0095 18 6 1.7084 -3.0470 1.4539 19 6 1.2418 -4.4800 1.4596 20 8 1.0489 -5.0590 0.4116 21 7 1.0379 -5.1175 2.6293 22 6 0.5837 -6.5104 2.6349 23 6 0.4323 -6.9917 4.0792 24 1 1.3633 -6.8293 4.6225 25 6 0.0711 -8.4926 4.0960 26 6 -0.9633 -8.5683 5.2539 27 6 -1.6695 -7.1968 5.1092 28 8 -0.6340 -6.2809 4.7192 29 1 -0.3634 0.0038 1.0277 30 1 -0.3634 0.8880 -0.5172 31 1 -0.3633 -0.8920 -0.5105 32 1 4.5591 2.4343 0.4989 33 1 5.6121 0.9993 0.4961 34 1 7.7419 3.6666 -0.8854 35 1 5.1239 -1.8137 -1.0370 36 1 5.6539 -1.0900 0.5005 37 1 4.6103 -2.5320 0.5086 38 1 2.5911 -3.1883 -0.5062 39 1 0.8988 -2.6365 -0.4997 40 1 0.9773 -2.4244 1.9695 41 1 2.6696 -2.9763 1.9632 42 1 1.1918 -4.6543 3.4675 43 1 -0.3773 -6.5812 2.1253 44 1 1.3150 -7.1331 2.1195 45 1 -0.3819 -8.7932 3.1513 46 1 0.9485 -9.1003 4.3175 47 1 -0.4648 -8.6534 6.2195 48 1 -1.6643 -9.3891 5.1028 49 1 -2.1045 -6.8929 6.0613 50 1 -2.4396 -7.2472 4.3394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024049571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:27 Heat of formation + Delta-G solvation = -38.299941 kcal Electronic energy + Delta-G solvation = -28321.218065 eV Core-core repulsion = 24348.936616 eV Total energy + Delta-G solvation = -3972.281450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.59645 -40.21621 -39.28264 -34.97282 -34.32640 -33.33084 -32.67930 -32.45809 -30.91383 -29.96629 -28.92762 -27.05295 -25.85676 -25.64708 -23.60321 -22.38219 -22.05073 -21.59498 -20.22645 -18.76510 -18.59795 -17.52389 -17.17916 -16.68476 -16.25865 -16.14613 -15.67859 -15.37047 -14.76715 -14.47434 -14.35159 -14.18501 -13.86405 -13.61789 -13.26684 -12.98626 -12.94011 -12.79407 -12.48291 -12.38877 -12.29608 -12.22015 -12.11607 -11.81229 -11.75723 -11.71878 -11.59735 -11.37973 -11.31053 -11.21313 -10.92649 -10.80383 -10.66684 -10.24713 -10.02583 -9.83630 -9.68584 -9.56110 -9.19978 -8.63993 -8.14428 -7.43376 -6.25284 -4.32346 2.68115 2.78748 2.99109 3.20834 3.28727 3.34368 3.35746 3.48895 3.65508 3.92686 4.19351 4.30882 4.33552 4.60143 4.67851 4.78349 4.91998 5.08557 5.13682 5.16100 5.19370 5.24959 5.26872 5.33182 5.38521 5.38891 5.46185 5.51408 5.66391 5.69527 5.82265 5.87913 5.98878 6.02942 6.06258 6.10748 6.24986 6.28497 6.40300 6.50390 6.53848 6.59205 6.89579 7.05503 7.14932 7.41611 7.55435 7.68140 7.90046 8.08910 8.21968 8.69842 8.78195 9.34118 10.82312 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.001885 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.467689 B =14851.750098 C =15183.720243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.256 3.744 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.093 3.907 15 C -0.086 4.086 16 C -0.268 4.268 17 C -0.010 4.010 18 C -0.133 4.133 19 C 0.513 3.487 20 O -0.543 6.543 21 N -0.731 5.731 22 C 0.111 3.889 23 C 0.068 3.932 24 H 0.088 0.912 25 C -0.148 4.148 26 C -0.156 4.156 27 C 0.049 3.951 28 O -0.375 6.375 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.403 0.597 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.422 -23.337 13.105 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.572 4.572 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.207 1.207 14 C -0.039 4.039 15 C -0.144 4.144 16 C -0.280 4.280 17 C -0.049 4.049 18 C -0.173 4.173 19 C 0.301 3.699 20 O -0.420 6.420 21 N -0.384 5.384 22 C -0.014 4.014 23 C 0.010 3.990 24 H 0.106 0.894 25 C -0.187 4.187 26 C -0.194 4.194 27 C -0.027 4.027 28 O -0.294 6.294 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.238 0.762 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.227 -22.007 12.415 28.520 hybrid contribution 0.512 -0.500 -0.491 0.867 sum -12.716 -22.506 11.924 28.468 Atomic orbital electron populations 1.20028 0.88064 1.02398 1.01828 1.21945 0.96113 0.90779 1.02537 1.77268 0.87493 1.22669 1.24705 1.49229 1.05765 1.04192 1.51278 1.19655 0.78014 0.89553 0.98909 1.21354 1.12914 1.31602 0.91375 0.91741 1.24930 0.95712 0.95041 0.98152 1.69930 1.18916 1.33080 1.31102 0.86305 0.78367 0.78284 0.83772 1.19560 1.20632 1.20662 1.20772 0.96123 0.85676 1.01284 1.20347 0.93748 0.97143 1.03149 1.19358 0.91340 0.95123 1.22218 1.19385 1.01557 0.90832 0.93148 1.21740 1.03025 0.91240 1.01303 1.21059 0.76473 0.89289 0.83100 1.90686 1.51272 1.68475 1.31579 1.45982 1.69740 1.13475 1.09225 1.21719 1.00641 0.83278 0.95723 1.23028 0.91816 0.91448 0.92758 0.89402 1.23135 1.00284 0.95322 0.99915 1.23298 0.98485 0.98364 0.99265 1.23408 0.90817 0.88222 1.00291 1.88476 1.30064 1.33003 1.77861 0.91588 0.91604 0.91236 0.93083 0.93101 0.92339 0.90477 0.90967 0.91094 0.91444 0.91311 0.88951 0.89099 0.76215 0.91215 0.90611 0.89892 0.89490 0.90221 0.89700 0.89557 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.26 36.01 0.37 -0.58 16 2 C 0.05 0.98 7.22 -82.40 -0.59 0.39 16 3 N -0.30 -6.95 12.58 33.67 0.42 -6.53 16 4 N -0.33 -7.69 3.60 -58.31 -0.21 -7.90 16 5 C 0.26 6.65 6.00 -5.19 -0.03 6.62 16 6 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 7 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 10 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.09 1.87 6.93 -82.26 -0.57 1.30 16 15 C -0.09 -1.43 9.72 36.01 0.35 -1.08 16 16 C -0.27 -4.90 5.35 -105.06 -0.56 -5.47 16 17 C -0.01 -0.15 4.41 -27.89 -0.12 -0.28 16 18 C -0.13 -1.59 5.68 -27.88 -0.16 -1.75 16 19 C 0.51 6.39 7.83 -10.99 -0.09 6.30 16 20 O -0.54 -8.74 15.98 5.56 0.09 -8.65 16 21 N -0.73 -6.96 5.53 -60.29 -0.33 -7.30 16 22 C 0.11 0.93 5.21 -4.04 -0.02 0.91 16 23 C 0.07 0.43 3.56 -26.01 -0.09 0.34 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 25 C -0.15 -0.66 6.56 -24.71 -0.16 -0.82 16 26 C -0.16 -0.61 7.16 -24.40 -0.17 -0.79 16 27 C 0.05 0.27 7.78 38.19 0.30 0.57 16 28 O -0.37 -3.04 10.99 -35.23 -0.39 -3.43 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.90 7.25 -51.93 -0.38 0.53 16 32 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.05 1.30 7.05 -51.92 -0.37 0.93 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.23 7.08 -51.93 -0.37 0.86 16 37 H 0.07 0.96 7.77 -51.92 -0.40 0.55 16 38 H 0.07 1.03 7.73 -51.93 -0.40 0.63 16 39 H 0.07 1.04 7.21 -51.93 -0.37 0.66 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.40 3.11 8.47 -40.82 -0.35 2.76 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.36 7.85 -51.93 -0.41 -0.05 16 46 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 411.84 15.07 6.21 6.21 Total: -1.00 -33.88 411.84 -8.98 -42.86 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.51 Total: 0.81 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.98 Total: -7.88 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.62 Total: -46.30 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.30 Total: -12.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.88 -8.98 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.561 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds