Wall clock time and date at job start Tue Mar 31 2020 20:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30836 * 125.89680 * 2 1 4 4 N 1.40083 * 108.20336 * 180.25775 * 3 2 1 5 5 C 1.46501 * 126.03701 * 179.69748 * 4 3 2 6 6 C 1.50702 * 109.47090 * 270.02164 * 5 4 3 7 7 H 1.08000 * 119.99845 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99901 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00226 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99880 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46867 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46973 * 119.99727 * 10 8 6 13 13 H 1.48496 * 109.47057 * 239.99775 * 10 8 6 14 14 C 1.34945 * 107.92443 * 359.71472 * 4 3 2 15 15 C 1.50701 * 126.12574 * 179.97438 * 14 4 3 16 16 C 1.35315 * 107.75035 * 0.02562 * 14 4 3 17 17 C 1.50697 * 126.04441 * 180.02562 * 16 14 4 18 18 C 1.52997 * 109.47466 * 89.99742 * 17 16 14 19 19 C 1.50701 * 109.47212 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99781 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99622 * 180.02562 * 19 18 17 22 22 C 1.46505 * 119.99622 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47212 * 179.97438 * 22 21 19 24 24 H 1.09005 * 109.82538 * 305.70306 * 23 22 21 25 25 C 1.54385 * 109.83407 * 184.81265 * 23 22 21 26 26 C 1.55446 * 102.18803 * 219.18238 * 25 23 22 27 27 C 1.54950 * 100.98975 * 34.03637 * 26 25 23 28 28 O 1.43245 * 109.83212 * 66.58387 * 23 22 21 29 29 H 1.09004 * 109.47223 * 270.21331 * 1 2 3 30 30 H 1.09001 * 109.47273 * 30.21669 * 1 2 3 31 31 H 1.09004 * 109.46775 * 150.21650 * 1 2 3 32 32 H 1.08997 * 109.47127 * 30.02274 * 5 4 3 33 33 H 1.09008 * 109.47156 * 150.02259 * 5 4 3 34 34 H 0.97000 * 119.99861 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47738 * 270.02616 * 15 14 4 36 36 H 1.09003 * 109.47129 * 30.02976 * 15 14 4 37 37 H 1.09009 * 109.47206 * 150.02532 * 15 14 4 38 38 H 1.09001 * 109.46613 * 329.99638 * 17 16 14 39 39 H 1.09002 * 109.47120 * 209.99989 * 17 16 14 40 40 H 1.09001 * 109.46832 * 60.00036 * 18 17 16 41 41 H 1.09002 * 109.47153 * 300.00227 * 18 17 16 42 42 H 0.96996 * 120.00772 * 359.97438 * 21 19 18 43 43 H 1.09002 * 109.47068 * 299.99729 * 22 21 19 44 44 H 1.09001 * 109.47372 * 59.99816 * 22 21 19 45 45 H 1.09000 * 110.84670 * 337.32271 * 25 23 22 46 46 H 1.08998 * 110.84705 * 100.93882 * 25 23 22 47 47 H 1.09001 * 111.06022 * 276.12476 * 26 25 23 48 48 H 1.08996 * 111.18295 * 152.00684 * 26 25 23 49 49 H 1.09001 * 110.30904 * 204.68976 * 27 26 25 50 50 H 1.09000 * 110.30445 * 82.52001 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 6 4.7898 1.5008 -0.0143 6 6 5.1871 1.7950 -1.4379 7 1 4.6165 1.3784 -2.2548 8 6 6.2788 2.5960 -1.6975 9 7 6.9740 3.1028 -0.7027 10 14 6.7708 2.9612 -3.4622 11 1 5.8342 2.2764 -4.3890 12 1 6.7179 4.4265 -3.6976 13 1 8.1516 2.4707 -3.7027 14 6 3.6142 -0.7153 -0.0032 15 6 4.8350 -1.5989 -0.0082 16 6 2.3271 -1.1330 0.0038 17 6 1.8599 -2.5657 0.0095 18 6 1.7084 -3.0470 1.4539 19 6 1.2418 -4.4800 1.4596 20 8 1.0489 -5.0590 0.4116 21 7 1.0379 -5.1175 2.6293 22 6 0.5837 -6.5104 2.6349 23 6 0.4323 -6.9917 4.0792 24 1 1.3633 -6.8293 4.6225 25 6 0.0711 -8.4926 4.0960 26 6 -0.9633 -8.5683 5.2539 27 6 -1.6695 -7.1968 5.1092 28 8 -0.6340 -6.2809 4.7192 29 1 -0.3634 0.0038 1.0277 30 1 -0.3634 0.8880 -0.5172 31 1 -0.3633 -0.8920 -0.5105 32 1 4.5591 2.4343 0.4989 33 1 5.6121 0.9993 0.4961 34 1 7.7419 3.6666 -0.8854 35 1 5.1239 -1.8137 -1.0370 36 1 5.6539 -1.0900 0.5005 37 1 4.6103 -2.5320 0.5086 38 1 2.5911 -3.1883 -0.5062 39 1 0.8988 -2.6365 -0.4997 40 1 0.9773 -2.4244 1.9695 41 1 2.6696 -2.9763 1.9632 42 1 1.1918 -4.6543 3.4675 43 1 -0.3773 -6.5812 2.1253 44 1 1.3150 -7.1331 2.1195 45 1 -0.3819 -8.7932 3.1513 46 1 0.9485 -9.1003 4.3175 47 1 -0.4648 -8.6534 6.2195 48 1 -1.6643 -9.3891 5.1028 49 1 -2.1045 -6.8929 6.0613 50 1 -2.4396 -7.2472 4.3394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024049571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:26 Heat of formation + Delta-G solvation = -60.556381 kcal Electronic energy + Delta-G solvation = -28322.183177 eV Core-core repulsion = 24348.936616 eV Total energy + Delta-G solvation = -3973.246561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.14863 -40.91643 -40.07176 -36.13566 -35.73500 -34.83408 -34.18941 -33.10527 -31.97378 -31.03141 -30.44080 -28.24671 -27.61613 -26.54686 -25.02607 -23.75765 -22.64809 -22.16118 -21.13669 -20.30451 -20.13209 -18.82678 -18.09414 -17.97390 -17.29854 -16.92639 -16.74280 -16.54420 -16.24339 -15.95701 -15.36547 -15.03585 -14.85937 -14.62154 -14.48395 -14.34458 -14.07502 -13.89736 -13.84576 -13.58852 -13.40336 -13.30833 -13.19381 -13.11318 -12.85605 -12.74571 -12.66518 -12.63029 -12.58787 -12.31170 -12.24174 -12.08558 -11.85024 -11.70629 -11.69294 -11.15442 -10.82275 -10.75725 -10.52227 -10.05007 -9.83277 -9.01939 -8.35394 -6.53048 1.17928 1.34161 1.36158 1.48775 1.71892 1.88830 1.95277 2.30521 2.32855 2.90495 2.93953 3.55041 3.73503 3.81904 3.92765 3.97123 4.00098 4.20143 4.21893 4.24783 4.29238 4.36815 4.43966 4.57623 4.62987 4.64966 4.67367 4.73172 4.77929 4.84304 4.85225 4.87850 4.90878 4.95203 4.97836 4.99418 5.04670 5.06990 5.14096 5.27747 5.31483 5.45466 5.49461 5.50639 5.56857 5.79978 6.05630 6.06298 6.32315 6.59796 6.62443 7.11964 7.18393 7.31810 8.70783 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.001885 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.467689 B =14851.750098 C =15183.720243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.053 3.947 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.274 3.726 6 C -0.552 4.552 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.972 3.028 11 H -0.275 1.275 12 H -0.274 1.274 13 H -0.265 1.265 14 C 0.078 3.922 15 C -0.082 4.082 16 C -0.258 4.258 17 C -0.003 4.003 18 C -0.125 4.125 19 C 0.516 3.484 20 O -0.584 6.584 21 N -0.719 5.719 22 C 0.110 3.890 23 C 0.070 3.930 24 H 0.098 0.902 25 C -0.147 4.147 26 C -0.150 4.150 27 C 0.040 3.960 28 O -0.398 6.398 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.048 0.952 34 H 0.274 0.726 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.414 0.586 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 -25.416 13.635 32.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.155 3.845 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.199 1.199 13 H -0.190 1.190 14 C -0.052 4.052 15 C -0.140 4.140 16 C -0.270 4.270 17 C -0.042 4.042 18 C -0.165 4.165 19 C 0.304 3.696 20 O -0.464 6.464 21 N -0.371 5.371 22 C -0.014 4.014 23 C 0.012 3.988 24 H 0.116 0.884 25 C -0.185 4.185 26 C -0.187 4.187 27 C -0.036 4.036 28 O -0.318 6.318 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.250 0.750 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.120 0.880 47 H 0.104 0.896 48 H 0.117 0.883 49 H 0.112 0.888 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.811 -24.108 12.997 30.673 hybrid contribution 0.579 0.090 -0.594 0.835 sum -13.232 -24.018 12.402 30.096 Atomic orbital electron populations 1.20207 0.84766 1.03420 1.03729 1.22779 0.98116 0.90246 1.00009 1.77204 0.87825 1.24980 1.27367 1.48996 1.05316 1.05154 1.54023 1.19140 0.79058 0.88753 0.97531 1.21459 1.13372 1.32406 0.91818 0.93541 1.25745 0.95388 0.94456 1.02327 1.70007 1.19270 1.33277 1.33068 0.85305 0.78406 0.78228 0.78519 1.19973 1.19894 1.19026 1.21465 0.98198 0.84702 1.00812 1.20443 0.92213 0.97904 1.03483 1.19718 0.90386 0.96511 1.20342 1.19351 1.01261 0.88392 0.95233 1.21623 1.04251 0.91196 0.99410 1.21039 0.76092 0.89290 0.83182 1.90677 1.53355 1.69312 1.33050 1.45911 1.68319 1.13948 1.08897 1.21807 0.99800 0.82554 0.97249 1.23064 0.91967 0.92512 0.91233 0.88427 1.23164 1.01083 0.94031 1.00214 1.23289 0.98401 0.97726 0.99315 1.23575 0.90519 0.88970 1.00558 1.88444 1.30890 1.34457 1.78013 0.89130 0.91661 0.89107 0.96274 0.93434 0.91725 0.90565 0.91796 0.87502 0.91744 0.91238 0.87618 0.87719 0.74971 0.92690 0.90484 0.89938 0.88000 0.89609 0.88336 0.88826 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.26 71.24 0.73 -1.00 16 2 C 0.05 2.04 7.22 43.10 0.31 2.35 16 3 N -0.35 -16.76 12.58 -47.38 -0.60 -17.35 16 4 N -0.35 -17.32 3.60 -338.39 -1.22 -18.54 16 5 C 0.27 14.91 6.00 85.63 0.51 15.42 16 6 C -0.55 -31.88 9.39 25.60 0.24 -31.64 16 7 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 8 C 0.02 1.22 5.46 84.65 0.46 1.68 16 9 N -0.92 -52.80 13.29 21.45 0.28 -52.51 16 10 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 14 C 0.08 3.15 6.93 41.41 0.29 3.44 16 15 C -0.08 -2.70 9.72 71.24 0.69 -2.01 16 16 C -0.26 -9.18 5.35 -20.15 -0.11 -9.28 16 17 C 0.00 -0.09 4.41 29.85 0.13 0.04 16 18 C -0.12 -2.69 5.68 29.85 0.17 -2.52 16 19 C 0.52 11.88 7.83 87.66 0.69 12.57 16 20 O -0.58 -18.09 15.98 -3.03 -0.05 -18.14 16 21 N -0.72 -12.33 5.53 -463.06 -2.56 -14.89 16 22 C 0.11 1.70 5.21 86.38 0.45 2.15 16 23 C 0.07 0.77 3.56 31.06 0.11 0.88 16 24 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 25 C -0.15 -0.99 6.56 31.91 0.21 -0.78 16 26 C -0.15 -0.84 7.16 32.10 0.23 -0.61 16 27 C 0.04 0.38 7.78 72.65 0.57 0.95 16 28 O -0.40 -5.86 10.99 -148.98 -1.64 -7.50 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.09 2.12 7.25 -2.38 -0.02 2.10 16 32 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 2.55 7.05 -2.38 -0.02 2.54 16 34 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 36 H 0.06 2.19 7.08 -2.39 -0.02 2.17 16 37 H 0.11 2.66 7.77 -2.38 -0.02 2.64 16 38 H 0.06 1.86 7.73 -2.39 -0.02 1.85 16 39 H 0.07 1.96 7.21 -2.39 -0.02 1.94 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.41 5.43 8.47 -92.71 -0.79 4.64 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 0.57 7.85 -2.39 -0.02 0.55 16 46 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.09 0.39 8.14 -2.39 -0.02 0.38 16 48 H 0.10 0.29 8.14 -2.39 -0.02 0.28 16 49 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -75.29 411.84 2.08 -73.21 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.15 Total: 17.95 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 5.68 Total: -8.37 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -4.09 Total: -103.30 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.69 Total: -25.64 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -75.29 2.08 -73.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.650 kcal (2) G-P(sol) polarization free energy of solvation -75.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds