Wall clock time and date at job start Tue Mar 31 2020 20:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30845 * 125.89635 * 2 1 4 4 N 1.40088 * 108.20103 * 180.25595 * 3 2 1 5 5 C 1.46493 * 126.03624 * 179.69293 * 4 3 2 6 6 C 1.50697 * 109.47593 * 270.02497 * 5 4 3 7 7 H 1.08002 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00478 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99655 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00155 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47303 * 89.99898 * 10 8 6 12 12 H 1.48505 * 109.47076 * 209.99674 * 10 8 6 13 13 H 1.48502 * 109.47367 * 329.99987 * 10 8 6 14 14 C 1.34944 * 107.92420 * 359.71845 * 4 3 2 15 15 C 1.50703 * 126.12672 * 179.97438 * 14 4 3 16 16 C 1.35315 * 107.75159 * 359.97438 * 14 4 3 17 17 C 1.50699 * 126.04322 * 180.02562 * 16 14 4 18 18 C 1.53006 * 109.46866 * 89.99935 * 17 16 14 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00040 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00033 * 180.02562 * 19 18 17 22 22 C 1.46500 * 120.00165 * 179.97438 * 21 19 18 23 23 C 1.52996 * 109.47368 * 179.97438 * 22 21 19 24 24 H 1.09001 * 109.86681 * 58.98943 * 23 22 21 25 25 C 1.54091 * 109.87948 * 179.97438 * 23 22 21 26 26 C 1.54816 * 104.18755 * 121.45533 * 25 23 22 27 27 C 1.54994 * 102.09276 * 20.87970 * 26 25 23 28 28 O 1.43745 * 109.87607 * 297.83315 * 23 22 21 29 29 H 1.08995 * 109.47163 * 270.21957 * 1 2 3 30 30 H 1.09001 * 109.46775 * 30.21433 * 1 2 3 31 31 H 1.08994 * 109.46884 * 150.21071 * 1 2 3 32 32 H 1.08999 * 109.47077 * 30.02732 * 5 4 3 33 33 H 1.08997 * 109.47248 * 150.02502 * 5 4 3 34 34 H 0.97000 * 120.00022 * 179.97438 * 9 8 6 35 35 H 1.08992 * 109.47402 * 270.02690 * 15 14 4 36 36 H 1.09005 * 109.46758 * 30.02393 * 15 14 4 37 37 H 1.08999 * 109.47423 * 150.01970 * 15 14 4 38 38 H 1.09000 * 109.47247 * 330.00104 * 17 16 14 39 39 H 1.09001 * 109.47358 * 209.99530 * 17 16 14 40 40 H 1.08993 * 109.46955 * 300.00219 * 18 17 16 41 41 H 1.09000 * 109.47050 * 60.00048 * 18 17 16 42 42 H 0.96996 * 119.99850 * 359.97438 * 21 19 18 43 43 H 1.08996 * 109.47197 * 300.00087 * 22 21 19 44 44 H 1.09004 * 109.46923 * 59.99390 * 22 21 19 45 45 H 1.09000 * 110.49250 * 240.12808 * 25 23 22 46 46 H 1.08999 * 110.48951 * 2.64899 * 25 23 22 47 47 H 1.08998 * 110.90747 * 139.07634 * 26 25 23 48 48 H 1.09003 * 110.91007 * 262.64910 * 26 25 23 49 49 H 1.08998 * 110.61723 * 81.47496 * 27 26 25 50 50 H 1.08998 * 110.62168 * 204.47792 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0143 6 6 5.1871 1.7950 -1.4379 7 1 4.6166 1.3784 -2.2548 8 6 6.2790 2.5959 -1.6976 9 7 6.9734 3.1036 -0.7028 10 14 6.7709 2.9611 -3.4622 11 1 6.0735 4.1871 -3.9269 12 1 8.2395 3.1698 -3.5336 13 1 6.3907 1.8168 -4.3290 14 6 3.6142 -0.7153 -0.0032 15 6 4.8350 -1.5989 -0.0082 16 6 2.3272 -1.1330 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0469 1.4555 19 6 1.2419 -4.4795 1.4617 20 8 1.0473 -5.0583 0.4138 21 7 1.0387 -5.1170 2.6316 22 6 0.5833 -6.5095 2.6375 23 6 0.4332 -6.9908 4.0820 24 1 -0.2825 -6.3606 4.6100 25 6 -0.0463 -8.4551 4.0992 26 6 1.0588 -9.2071 4.8804 27 6 1.7364 -8.0588 5.6706 28 8 1.7076 -6.9501 4.7457 29 1 -0.3633 0.0039 1.0276 30 1 -0.3633 0.8881 -0.5172 31 1 -0.3633 -0.8918 -0.5105 32 1 4.5592 2.4343 0.4989 33 1 5.6121 0.9993 0.4961 34 1 7.7418 3.6668 -0.8854 35 1 5.1239 -1.8137 -1.0369 36 1 5.6539 -1.0900 0.5005 37 1 4.6103 -2.5320 0.5085 38 1 2.5906 -3.1884 -0.5053 39 1 0.8984 -2.6365 -0.4974 40 1 2.6712 -2.9761 1.9639 41 1 0.9790 -2.4243 1.9718 42 1 1.1939 -4.6540 3.4696 43 1 -0.3782 -6.5795 2.1290 44 1 1.3135 -7.1327 2.1212 45 1 -1.0023 -8.5376 4.6163 46 1 -0.1285 -8.8416 3.0834 47 1 0.6246 -9.9422 5.5580 48 1 1.7650 -9.6796 4.1975 49 1 1.1668 -7.8232 6.5696 50 1 2.7637 -8.3210 5.9236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024049573.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:31 Heat of formation + Delta-G solvation = -37.736964 kcal Electronic energy + Delta-G solvation = -28343.898090 eV Core-core repulsion = 24371.641053 eV Total energy + Delta-G solvation = -3972.257037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.59289 -40.19228 -39.27665 -34.98524 -34.32426 -33.32731 -32.66079 -32.45492 -30.90682 -29.95320 -28.93043 -27.01349 -25.84988 -25.56019 -23.59951 -22.53983 -22.03119 -21.63188 -20.19608 -18.76507 -18.59451 -17.29628 -17.07271 -16.67928 -16.36593 -16.07407 -15.54863 -15.38719 -15.25698 -14.45648 -14.29714 -14.13881 -13.88049 -13.68883 -13.08232 -12.98777 -12.86246 -12.81610 -12.47990 -12.40534 -12.28055 -12.21387 -12.11423 -11.82300 -11.75319 -11.66538 -11.59929 -11.30336 -11.22895 -11.20477 -10.94512 -10.77781 -10.66594 -10.23931 -10.18506 -9.84061 -9.70194 -9.56134 -9.19915 -8.62935 -8.14267 -7.43181 -6.24599 -4.31727 2.68350 2.78984 3.00538 3.22903 3.28957 3.33466 3.36465 3.48711 3.65599 4.00567 4.22013 4.31322 4.37188 4.53589 4.71256 4.79170 4.92564 5.06681 5.09166 5.17152 5.25344 5.27509 5.30691 5.34091 5.39369 5.41987 5.45471 5.52074 5.61612 5.69907 5.83170 5.87478 5.97625 6.03667 6.07230 6.10901 6.23323 6.28234 6.40972 6.42051 6.51997 6.59379 6.90155 7.06031 7.15196 7.41703 7.55538 7.68466 7.90644 8.09235 8.21980 8.69943 8.78320 9.34588 10.82981 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.001958 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.873798 B =14297.495964 C =14895.053460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.050 3.950 3 N -0.298 5.298 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.268 4.268 17 C -0.010 4.010 18 C -0.133 4.133 19 C 0.513 3.487 20 O -0.543 6.543 21 N -0.732 5.732 22 C 0.123 3.877 23 C 0.064 3.936 24 H 0.076 0.924 25 C -0.150 4.150 26 C -0.156 4.156 27 C 0.046 3.954 28 O -0.370 6.370 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.404 0.596 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.061 0.939 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.055 -23.204 13.476 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.122 5.122 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.281 4.281 17 C -0.049 4.049 18 C -0.173 4.173 19 C 0.301 3.699 20 O -0.420 6.420 21 N -0.385 5.385 22 C -0.002 4.002 23 C 0.005 3.995 24 H 0.094 0.906 25 C -0.188 4.188 26 C -0.193 4.193 27 C -0.031 4.031 28 O -0.289 6.289 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.238 0.762 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.080 0.920 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.688 -21.938 12.720 28.356 hybrid contribution 0.350 -0.439 -0.374 0.674 sum -12.339 -22.377 12.346 28.379 Atomic orbital electron populations 1.20021 0.88079 1.02396 1.01782 1.21944 0.96103 0.90786 1.02595 1.77270 0.87501 1.22666 1.24715 1.49229 1.05761 1.04200 1.51272 1.19646 0.78016 0.89542 0.98894 1.21310 1.12956 1.31679 0.91351 0.91806 1.24930 0.95703 0.95042 0.98154 1.69920 1.18935 1.33007 1.31159 0.86355 0.77584 0.78979 0.83767 1.20318 1.20886 1.19660 1.20778 0.96141 0.85667 1.01201 1.20350 0.93747 0.97171 1.03160 1.19356 0.91342 0.95117 1.22238 1.19388 1.01558 0.90837 0.93141 1.21739 1.03067 0.91187 1.01307 1.21059 0.76442 0.89317 0.83078 1.90688 1.51175 1.68536 1.31584 1.45983 1.69901 1.13341 1.09268 1.21527 1.00763 0.83200 0.94661 1.23021 0.86504 0.96805 0.93125 0.90642 1.22929 0.99437 0.94043 1.02371 1.23142 0.98124 0.98498 0.99585 1.23581 1.01822 0.85260 0.92426 1.88947 1.34816 1.49630 1.55473 0.91628 0.91611 0.91238 0.93096 0.93093 0.92285 0.90469 0.90957 0.91055 0.91431 0.91308 0.89024 0.89026 0.76176 0.90399 0.90951 0.90174 0.89820 0.90050 0.90261 0.92042 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.26 36.01 0.37 -0.56 16 2 C 0.05 0.97 7.22 -82.40 -0.59 0.37 16 3 N -0.30 -6.94 12.58 33.67 0.42 -6.52 16 4 N -0.33 -7.70 3.60 -58.32 -0.21 -7.91 16 5 C 0.26 6.68 6.00 -5.20 -0.03 6.64 16 6 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 7 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 10 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.09 1.90 6.93 -82.26 -0.57 1.33 16 15 C -0.09 -1.46 9.72 36.01 0.35 -1.11 16 16 C -0.27 -4.91 5.35 -105.06 -0.56 -5.47 16 17 C -0.01 -0.15 4.41 -27.88 -0.12 -0.28 16 18 C -0.13 -1.60 5.68 -27.88 -0.16 -1.75 16 19 C 0.51 6.40 7.83 -10.99 -0.09 6.31 16 20 O -0.54 -8.72 15.98 5.56 0.09 -8.63 16 21 N -0.73 -7.01 5.48 -60.30 -0.33 -7.34 16 22 C 0.12 1.04 5.15 -4.04 -0.02 1.02 16 23 C 0.06 0.41 3.49 -26.16 -0.09 0.32 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 C -0.15 -0.69 6.64 -25.20 -0.17 -0.86 16 26 C -0.16 -0.68 7.15 -24.72 -0.18 -0.86 16 27 C 0.05 0.25 7.72 38.21 0.29 0.54 16 28 O -0.37 -3.04 11.05 -35.23 -0.39 -3.43 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.88 7.25 -51.93 -0.38 0.51 16 32 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.05 1.31 7.05 -51.93 -0.37 0.94 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.25 7.08 -51.93 -0.37 0.88 16 37 H 0.07 0.99 7.77 -51.93 -0.40 0.58 16 38 H 0.07 1.05 7.73 -51.93 -0.40 0.65 16 39 H 0.07 1.03 7.20 -51.93 -0.37 0.65 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.40 3.16 8.42 -40.82 -0.34 2.82 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.38 7.70 -51.93 -0.40 -0.02 16 47 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 411.54 15.07 6.20 6.20 Total: -1.00 -33.83 411.54 -8.98 -42.81 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.50 Total: 0.97 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.99 Total: -7.94 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.62 Total: -46.40 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.30 Total: -12.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.83 -8.98 -42.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049573.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.074 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds