Wall clock time and date at job start Tue Mar 31 2020 20:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30845 * 125.89635 * 2 1 4 4 N 1.40088 * 108.20103 * 180.25595 * 3 2 1 5 5 C 1.46493 * 126.03624 * 179.69293 * 4 3 2 6 6 C 1.50697 * 109.47593 * 270.02497 * 5 4 3 7 7 H 1.08002 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00478 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99655 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00155 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47303 * 89.99898 * 10 8 6 12 12 H 1.48505 * 109.47076 * 209.99674 * 10 8 6 13 13 H 1.48502 * 109.47367 * 329.99987 * 10 8 6 14 14 C 1.34944 * 107.92420 * 359.71845 * 4 3 2 15 15 C 1.50703 * 126.12672 * 179.97438 * 14 4 3 16 16 C 1.35315 * 107.75159 * 359.97438 * 14 4 3 17 17 C 1.50699 * 126.04322 * 180.02562 * 16 14 4 18 18 C 1.53006 * 109.46866 * 89.99935 * 17 16 14 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00040 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00033 * 180.02562 * 19 18 17 22 22 C 1.46500 * 120.00165 * 179.97438 * 21 19 18 23 23 C 1.52996 * 109.47368 * 179.97438 * 22 21 19 24 24 H 1.09001 * 109.86681 * 58.98943 * 23 22 21 25 25 C 1.54091 * 109.87948 * 179.97438 * 23 22 21 26 26 C 1.54816 * 104.18755 * 121.45533 * 25 23 22 27 27 C 1.54994 * 102.09276 * 20.87970 * 26 25 23 28 28 O 1.43745 * 109.87607 * 297.83315 * 23 22 21 29 29 H 1.08995 * 109.47163 * 270.21957 * 1 2 3 30 30 H 1.09001 * 109.46775 * 30.21433 * 1 2 3 31 31 H 1.08994 * 109.46884 * 150.21071 * 1 2 3 32 32 H 1.08999 * 109.47077 * 30.02732 * 5 4 3 33 33 H 1.08997 * 109.47248 * 150.02502 * 5 4 3 34 34 H 0.97000 * 120.00022 * 179.97438 * 9 8 6 35 35 H 1.08992 * 109.47402 * 270.02690 * 15 14 4 36 36 H 1.09005 * 109.46758 * 30.02393 * 15 14 4 37 37 H 1.08999 * 109.47423 * 150.01970 * 15 14 4 38 38 H 1.09000 * 109.47247 * 330.00104 * 17 16 14 39 39 H 1.09001 * 109.47358 * 209.99530 * 17 16 14 40 40 H 1.08993 * 109.46955 * 300.00219 * 18 17 16 41 41 H 1.09000 * 109.47050 * 60.00048 * 18 17 16 42 42 H 0.96996 * 119.99850 * 359.97438 * 21 19 18 43 43 H 1.08996 * 109.47197 * 300.00087 * 22 21 19 44 44 H 1.09004 * 109.46923 * 59.99390 * 22 21 19 45 45 H 1.09000 * 110.49250 * 240.12808 * 25 23 22 46 46 H 1.08999 * 110.48951 * 2.64899 * 25 23 22 47 47 H 1.08998 * 110.90747 * 139.07634 * 26 25 23 48 48 H 1.09003 * 110.91007 * 262.64910 * 26 25 23 49 49 H 1.08998 * 110.61723 * 81.47496 * 27 26 25 50 50 H 1.08998 * 110.62168 * 204.47792 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0143 6 6 5.1871 1.7950 -1.4379 7 1 4.6166 1.3784 -2.2548 8 6 6.2790 2.5959 -1.6976 9 7 6.9734 3.1036 -0.7028 10 14 6.7709 2.9611 -3.4622 11 1 6.0735 4.1871 -3.9269 12 1 8.2395 3.1698 -3.5336 13 1 6.3907 1.8168 -4.3290 14 6 3.6142 -0.7153 -0.0032 15 6 4.8350 -1.5989 -0.0082 16 6 2.3272 -1.1330 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0469 1.4555 19 6 1.2419 -4.4795 1.4617 20 8 1.0473 -5.0583 0.4138 21 7 1.0387 -5.1170 2.6316 22 6 0.5833 -6.5095 2.6375 23 6 0.4332 -6.9908 4.0820 24 1 -0.2825 -6.3606 4.6100 25 6 -0.0463 -8.4551 4.0992 26 6 1.0588 -9.2071 4.8804 27 6 1.7364 -8.0588 5.6706 28 8 1.7076 -6.9501 4.7457 29 1 -0.3633 0.0039 1.0276 30 1 -0.3633 0.8881 -0.5172 31 1 -0.3633 -0.8918 -0.5105 32 1 4.5592 2.4343 0.4989 33 1 5.6121 0.9993 0.4961 34 1 7.7418 3.6668 -0.8854 35 1 5.1239 -1.8137 -1.0369 36 1 5.6539 -1.0900 0.5005 37 1 4.6103 -2.5320 0.5085 38 1 2.5906 -3.1884 -0.5053 39 1 0.8984 -2.6365 -0.4974 40 1 2.6712 -2.9761 1.9639 41 1 0.9790 -2.4243 1.9718 42 1 1.1939 -4.6540 3.4696 43 1 -0.3782 -6.5795 2.1290 44 1 1.3135 -7.1327 2.1212 45 1 -1.0023 -8.5376 4.6163 46 1 -0.1285 -8.8416 3.0834 47 1 0.6246 -9.9422 5.5580 48 1 1.7650 -9.6796 4.1975 49 1 1.1668 -7.8232 6.5696 50 1 2.7637 -8.3210 5.9236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024049573.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:30 Heat of formation + Delta-G solvation = -59.955813 kcal Electronic energy + Delta-G solvation = -28344.861572 eV Core-core repulsion = 24371.641053 eV Total energy + Delta-G solvation = -3973.220519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.14699 -40.90168 -40.05790 -36.13683 -35.74537 -34.83237 -34.18825 -33.10451 -31.97358 -31.02525 -30.43393 -28.22993 -27.61398 -26.45003 -24.99980 -23.76119 -22.86903 -22.15813 -21.08760 -20.30125 -20.13405 -18.82494 -18.11728 -17.67256 -17.26881 -17.05814 -16.65742 -16.27515 -16.25383 -16.11329 -15.78700 -14.96787 -14.86302 -14.57778 -14.50306 -14.34272 -14.14688 -13.97142 -13.70822 -13.47750 -13.36471 -13.32415 -13.19182 -13.16561 -12.84910 -12.76024 -12.63372 -12.61683 -12.58046 -12.33789 -12.22637 -12.05733 -11.84688 -11.70822 -11.57343 -11.15446 -10.82033 -10.75847 -10.66741 -10.05039 -9.83158 -9.01893 -8.35238 -6.52963 1.17755 1.35133 1.36284 1.47636 1.71932 1.89115 1.95212 2.30739 2.32873 2.91466 2.94085 3.59612 3.77153 3.82898 3.92764 3.97793 4.01178 4.14542 4.22467 4.25431 4.29036 4.36964 4.45564 4.57734 4.63022 4.65049 4.66949 4.73150 4.78659 4.84887 4.86208 4.88016 4.91464 4.95595 4.97700 4.99922 5.04323 5.11196 5.14790 5.20387 5.31712 5.45671 5.49157 5.50476 5.56823 5.79986 5.95263 6.06546 6.31936 6.59680 6.62105 7.12110 7.18296 7.31690 8.70765 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.001958 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.873798 B =14297.495964 C =14895.053460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.047 0.953 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.274 1.274 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.077 3.923 15 C -0.083 4.083 16 C -0.257 4.257 17 C -0.003 4.003 18 C -0.125 4.125 19 C 0.516 3.484 20 O -0.583 6.583 21 N -0.719 5.719 22 C 0.121 3.879 23 C 0.067 3.933 24 H 0.088 0.912 25 C -0.148 4.148 26 C -0.153 4.153 27 C 0.039 3.961 28 O -0.396 6.396 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.274 0.726 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.414 0.586 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 -25.034 14.059 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.173 5.173 4 N -0.135 5.135 5 C 0.155 3.845 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.556 5.556 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.193 1.193 13 H -0.195 1.195 14 C -0.053 4.053 15 C -0.141 4.141 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.165 4.165 19 C 0.304 3.696 20 O -0.463 6.463 21 N -0.371 5.371 22 C -0.003 4.003 23 C 0.009 3.991 24 H 0.106 0.894 25 C -0.186 4.186 26 C -0.191 4.191 27 C -0.037 4.037 28 O -0.316 6.316 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.250 0.750 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.101 0.899 47 H 0.118 0.882 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.973 -23.792 13.354 30.653 hybrid contribution 0.667 0.057 -0.484 0.826 sum -13.307 -23.735 12.870 30.101 Atomic orbital electron populations 1.20213 0.84603 1.03467 1.03805 1.22800 0.98184 0.90150 0.99947 1.77208 0.87769 1.24990 1.27361 1.48990 1.05351 1.05111 1.54055 1.19127 0.79060 0.88738 0.97531 1.21429 1.13408 1.32438 0.91811 0.93503 1.25754 0.95391 0.94472 1.02357 1.70001 1.19274 1.33207 1.33136 0.85356 0.77877 0.78652 0.78606 1.19969 1.19334 1.19487 1.21450 0.98197 0.84721 1.00892 1.20431 0.92319 0.97880 1.03430 1.19718 0.90354 0.96543 1.20297 1.19356 1.01331 0.88339 0.95224 1.21622 1.04176 0.91256 0.99418 1.21037 0.76058 0.89320 0.83157 1.90679 1.53253 1.69359 1.33043 1.45907 1.68535 1.13764 1.08931 1.21616 1.00280 0.82154 0.96220 1.23055 0.86295 0.98160 0.91619 0.89391 1.22960 1.00252 0.92726 1.02703 1.23144 0.97872 0.98465 0.99614 1.23756 1.02454 0.84953 0.92550 1.88909 1.35723 1.50788 1.56206 0.89005 0.91685 0.88997 0.96253 0.93547 0.91725 0.90592 0.91827 0.87695 0.92011 0.90935 0.88147 0.87202 0.74964 0.90016 0.92655 0.88411 0.89906 0.88243 0.90989 0.90834 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 10.26 71.24 0.73 -0.94 16 2 C 0.05 2.05 7.22 43.10 0.31 2.36 16 3 N -0.35 -16.67 12.58 -47.38 -0.60 -17.26 16 4 N -0.36 -17.38 3.60 -338.43 -1.22 -18.60 16 5 C 0.27 14.98 6.00 85.63 0.51 15.50 16 6 C -0.55 -31.98 9.39 25.60 0.24 -31.74 16 7 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 8 C 0.02 1.19 5.46 84.65 0.46 1.65 16 9 N -0.92 -53.02 13.29 21.45 0.28 -52.74 16 10 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 14 C 0.08 3.14 6.93 41.41 0.29 3.43 16 15 C -0.08 -2.77 9.72 71.24 0.69 -2.08 16 16 C -0.26 -9.16 5.35 -20.14 -0.11 -9.26 16 17 C 0.00 -0.10 4.41 29.85 0.13 0.03 16 18 C -0.12 -2.69 5.68 29.85 0.17 -2.52 16 19 C 0.52 11.90 7.83 87.66 0.69 12.59 16 20 O -0.58 -18.05 15.98 -3.04 -0.05 -18.10 16 21 N -0.72 -12.42 5.48 -463.06 -2.54 -14.95 16 22 C 0.12 1.89 5.15 86.38 0.44 2.33 16 23 C 0.07 0.73 3.49 30.96 0.11 0.84 16 24 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 25 C -0.15 -1.06 6.64 31.58 0.21 -0.85 16 26 C -0.15 -1.04 7.15 31.90 0.23 -0.81 16 27 C 0.04 0.36 7.72 72.66 0.56 0.92 16 28 O -0.40 -5.93 11.05 -148.98 -1.65 -7.58 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 2.06 7.25 -2.39 -0.02 2.04 16 32 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 2.51 7.05 -2.39 -0.02 2.50 16 34 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.06 2.23 7.08 -2.38 -0.02 2.21 16 37 H 0.10 2.74 7.77 -2.39 -0.02 2.72 16 38 H 0.06 1.82 7.73 -2.39 -0.02 1.80 16 39 H 0.07 2.00 7.20 -2.39 -0.02 1.98 16 40 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.41 5.52 8.42 -92.71 -0.78 4.74 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.08 0.61 7.70 -2.39 -0.02 0.59 16 47 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -75.31 411.54 2.09 -73.22 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.15 Total: 18.31 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.67 Total: -8.56 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.06 Total: -103.55 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -1.69 Total: -25.68 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -75.31 2.09 -73.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049573.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.263 kcal (2) G-P(sol) polarization free energy of solvation -75.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds