Wall clock time and date at job start Tue Mar 31 2020 18:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42909 * 113.99930 * 2 1 4 4 C 1.52995 * 109.47121 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47014 * 65.00445 * 4 3 2 6 6 C 1.46503 * 119.99898 * 269.99686 * 5 4 3 7 7 C 1.50697 * 109.47193 * 270.00187 * 6 5 4 8 8 H 1.08004 * 120.00483 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00130 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99883 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00379 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46777 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47595 * 119.99652 * 11 9 7 14 14 H 1.48498 * 109.47062 * 239.99888 * 11 9 7 15 15 C 1.34770 * 120.00102 * 90.00109 * 5 4 3 16 16 O 1.21599 * 120.00105 * 180.02562 * 15 5 4 17 17 N 1.34778 * 120.00358 * 359.97438 * 15 5 4 18 18 C 1.40189 * 120.00459 * 184.59650 * 17 15 5 19 19 C 1.38857 * 119.99337 * 324.90215 * 18 17 15 20 20 C 1.38056 * 120.00716 * 180.02562 * 19 18 17 21 21 C 1.38898 * 119.99308 * 359.97438 * 20 19 18 22 22 N 1.39922 * 120.00588 * 179.97438 * 21 20 19 23 23 C 1.46901 * 110.99765 * 60.00114 * 22 21 20 24 24 C 1.46898 * 110.99979 * 296.04815 * 22 21 20 25 25 C 1.38858 * 119.99063 * 0.25791 * 21 20 19 26 26 C 1.50701 * 120.00641 * 179.74120 * 25 21 20 27 27 C 1.38094 * 119.99361 * 359.51407 * 25 21 20 28 28 H 1.08997 * 109.47099 * 59.99734 * 1 2 3 29 29 H 1.09003 * 109.46653 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46813 * 299.99495 * 1 2 3 31 31 H 1.08996 * 109.46788 * 60.00319 * 3 2 1 32 32 H 1.09001 * 109.47145 * 300.00199 * 3 2 1 33 33 H 1.09005 * 109.47387 * 305.00428 * 4 3 2 34 34 H 1.08999 * 109.47345 * 185.00480 * 4 3 2 35 35 H 1.08997 * 109.47116 * 29.99739 * 6 5 4 36 36 H 1.09000 * 109.46778 * 150.00196 * 6 5 4 37 37 H 0.97002 * 119.99885 * 179.97438 * 10 9 7 38 38 H 0.97007 * 119.99565 * 4.59298 * 17 15 5 39 39 H 1.08001 * 120.00068 * 0.02562 * 19 18 17 40 40 H 1.07995 * 120.00306 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.46719 * 60.00296 * 23 22 21 42 42 H 1.08990 * 109.47273 * 300.00387 * 23 22 21 43 43 H 1.08996 * 109.46616 * 180.02562 * 23 22 21 44 44 H 1.08996 * 109.47225 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.47443 * 300.00409 * 24 22 21 46 46 H 1.09005 * 109.47016 * 59.99556 * 24 22 21 47 47 H 1.09000 * 109.46907 * 89.99674 * 26 25 21 48 48 H 1.08998 * 109.47437 * 210.00195 * 26 25 21 49 49 H 1.09003 * 109.46939 * 330.00452 * 26 25 21 50 50 H 1.08003 * 120.00019 * 180.21397 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.1052 -0.8919 -1.3429 7 6 5.5010 -1.2976 -0.9451 8 1 6.2199 -0.5457 -0.6546 9 6 5.8607 -2.6286 -0.9530 10 7 4.9855 -3.5442 -1.3072 11 14 7.5906 -3.1316 -0.4592 12 1 8.3760 -1.9218 -0.1060 13 1 7.5262 -4.0403 0.7135 14 1 8.2449 -3.8325 -1.5931 15 6 4.2614 1.3340 -2.3218 16 8 4.6264 0.8192 -3.3612 17 7 4.1418 2.6739 -2.2391 18 6 4.3454 3.4674 -3.3767 19 6 5.3015 3.1028 -4.3153 20 6 5.5027 3.8843 -5.4355 21 6 4.7481 5.0352 -5.6237 22 7 4.9521 5.8278 -6.7587 23 6 4.7003 5.0627 -7.9872 24 6 6.3043 6.4017 -6.7638 25 6 3.7955 5.4023 -4.6826 26 6 2.9807 6.6540 -4.8836 27 6 3.5914 4.6177 -3.5646 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1766 0.0890 35 1 3.3854 -1.3628 -0.6735 36 1 3.9120 -1.2111 -2.3670 37 1 5.2386 -4.4806 -1.3131 38 1 3.9148 3.0892 -1.3923 39 1 5.8879 2.2077 -4.1692 40 1 6.2465 3.6008 -6.1653 41 1 3.6696 4.7079 -7.9893 42 1 5.3781 4.2103 -8.0297 43 1 4.8665 5.7024 -8.8539 44 1 6.4363 7.0127 -7.6567 45 1 6.4400 7.0202 -5.8766 46 1 7.0404 5.5977 -6.7620 47 1 2.0744 6.4123 -5.4387 48 1 2.7120 7.0724 -3.9136 49 1 3.5665 7.3827 -5.4439 50 1 2.8480 4.9012 -2.8343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078487674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:18 Heat of formation + Delta-G solvation = -23.788530 kcal Electronic energy + Delta-G solvation = -29629.084483 eV Core-core repulsion = 25657.432296 eV Total energy + Delta-G solvation = -3971.652188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.45772 -39.35494 -37.67956 -36.65102 -34.90507 -34.06342 -32.63817 -32.16568 -29.63814 -29.08166 -27.70516 -26.95985 -26.74509 -25.95992 -24.27547 -22.85173 -22.76715 -21.84550 -20.66560 -19.17696 -17.91085 -16.82917 -16.59922 -16.43227 -16.13935 -15.73854 -15.45718 -15.14314 -14.89100 -14.79586 -14.35227 -14.05645 -13.96200 -13.83592 -13.47370 -13.27359 -12.87647 -12.74560 -12.56592 -12.39195 -12.26539 -12.11645 -11.97129 -11.85316 -11.73310 -11.68159 -11.55459 -11.24115 -11.13391 -10.92177 -10.83709 -10.41936 -10.11095 -9.84285 -9.57694 -9.46750 -9.22883 -8.61840 -8.55493 -8.35613 -7.87686 -7.51606 -5.96588 -4.00712 1.38647 1.55185 3.17932 3.33362 3.40731 3.44933 3.65045 3.81951 3.95298 4.08550 4.34328 4.52742 4.94868 5.00252 5.01932 5.20513 5.24000 5.32674 5.33431 5.34483 5.37049 5.37909 5.41276 5.49039 5.51676 5.53805 5.58085 5.67509 5.71746 5.72199 5.75176 5.79621 5.83917 5.93568 6.07353 6.15194 6.33671 6.54119 6.70304 6.75217 6.76935 6.91976 7.09435 7.37416 7.46732 7.54637 7.60695 7.73179 8.01890 8.32322 8.61286 8.99606 9.25441 9.63486 11.11213 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.003254 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.554253 B = 8603.562095 C =10469.607276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.112 3.888 5 N -0.598 5.598 6 C 0.264 3.736 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.697 3.303 16 O -0.566 6.566 17 N -0.699 5.699 18 C 0.184 3.816 19 C -0.115 4.115 20 C -0.124 4.124 21 C 0.051 3.949 22 N -0.504 5.504 23 C 0.027 3.973 24 C 0.027 3.973 25 C -0.046 4.046 26 C -0.100 4.100 27 C -0.154 4.154 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.261 0.739 38 H 0.399 0.601 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.030 0.970 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.075 0.925 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 20.734 -3.418 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.036 4.036 4 C -0.013 4.013 5 N -0.332 5.332 6 C 0.145 3.855 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.399 3.601 16 O -0.442 6.442 17 N -0.349 5.349 18 C 0.088 3.912 19 C -0.136 4.136 20 C -0.145 4.145 21 C -0.044 4.044 22 N -0.224 5.224 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.047 4.047 26 C -0.157 4.157 27 C -0.175 4.175 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.235 0.765 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.094 0.906 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.835 20.243 -4.136 21.470 hybrid contribution 1.178 -0.710 0.723 1.553 sum -4.657 19.534 -3.413 20.369 Atomic orbital electron populations 1.22704 0.81956 1.02669 0.99111 1.88104 1.18782 1.26688 1.95131 1.23119 0.95246 0.85672 0.99531 1.21463 0.91292 0.98505 0.90080 1.47555 1.67465 1.09515 1.08642 1.19279 0.96700 0.70514 0.99014 1.21526 0.97518 0.92211 1.45224 0.92616 1.24910 0.97324 0.96416 0.95416 1.69959 1.34190 1.00927 1.48125 0.86485 0.84651 0.78433 0.78058 1.19926 1.21036 1.20991 1.15983 0.79187 0.80032 0.84939 1.90890 1.52388 1.72024 1.28938 1.43076 1.75002 1.05853 1.10946 1.17584 0.94127 0.91094 0.88437 1.21318 0.97494 1.00669 0.94157 1.21432 0.99873 0.95168 0.97985 1.18512 0.98773 0.93674 0.93409 1.59650 1.27307 1.34448 1.01018 1.22436 1.01836 0.96565 0.91139 1.22437 0.87870 0.99085 1.02590 1.19418 0.95936 0.96610 0.92753 1.20594 0.98961 0.94714 1.01419 1.20655 1.00833 0.96727 0.99335 0.94601 0.89692 0.94658 0.93005 0.93741 0.88478 0.90831 0.93411 0.94157 0.92899 0.76456 0.83741 0.86456 0.91192 0.95059 0.91288 0.91301 0.91282 0.95168 0.91665 0.92480 0.90600 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.28 9.53 -35.23 -0.34 -6.61 16 3 C 0.04 0.59 6.28 37.16 0.23 0.82 16 4 C 0.11 1.76 5.62 -4.04 -0.02 1.74 16 5 N -0.60 -12.71 2.42 -180.80 -0.44 -13.15 16 6 C 0.26 7.03 4.98 -5.19 -0.03 7.00 16 7 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 11 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 C 0.70 14.84 8.12 -86.92 -0.71 14.14 16 16 O -0.57 -14.51 13.36 5.28 0.07 -14.44 16 17 N -0.70 -11.29 5.22 -14.18 -0.07 -11.37 16 18 C 0.18 2.91 6.30 -83.59 -0.53 2.38 16 19 C -0.12 -1.97 8.69 -39.42 -0.34 -2.32 16 20 C -0.12 -1.80 8.57 -39.40 -0.34 -2.14 16 21 C 0.05 0.66 4.72 -83.69 -0.39 0.27 16 22 N -0.50 -5.53 3.93 -186.80 -0.73 -6.26 16 23 C 0.03 0.27 9.35 60.07 0.56 0.83 16 24 C 0.03 0.25 9.39 60.06 0.56 0.82 16 25 C -0.05 -0.57 5.89 -104.44 -0.62 -1.18 16 26 C -0.10 -0.97 9.76 36.01 0.35 -0.61 16 27 C -0.15 -1.99 9.61 -39.42 -0.38 -2.37 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.63 8.07 -51.93 -0.42 1.21 16 34 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 35 H 0.05 1.32 7.11 -51.93 -0.37 0.95 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.40 5.02 6.52 -40.82 -0.27 4.76 16 39 H 0.14 2.91 6.22 -52.49 -0.33 2.58 16 40 H 0.12 1.58 7.02 -52.49 -0.37 1.21 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.32 7.12 -51.93 -0.37 -0.05 16 43 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 44 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.03 0.29 7.34 -51.93 -0.38 -0.09 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.46 8.09 -51.93 -0.42 0.05 16 49 H 0.08 0.73 7.45 -51.93 -0.39 0.34 16 50 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 405.96 15.07 6.12 6.12 Total: -1.00 -34.89 405.96 -8.84 -43.73 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.21 Total: 3.89 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -0.95 Total: 7.18 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.51 Total: -57.01 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.27 Total: -21.06 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.89 -8.84 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078487674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.946 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds