Wall clock time and date at job start Tue Mar 31 2020 18:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42909 * 113.99930 * 2 1 4 4 C 1.52995 * 109.47121 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47014 * 65.00445 * 4 3 2 6 6 C 1.46503 * 119.99898 * 269.99686 * 5 4 3 7 7 C 1.50697 * 109.47193 * 270.00187 * 6 5 4 8 8 H 1.08004 * 120.00483 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00130 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99883 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00379 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46777 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47595 * 119.99652 * 11 9 7 14 14 H 1.48498 * 109.47062 * 239.99888 * 11 9 7 15 15 C 1.34770 * 120.00102 * 90.00109 * 5 4 3 16 16 O 1.21599 * 120.00105 * 180.02562 * 15 5 4 17 17 N 1.34778 * 120.00358 * 359.97438 * 15 5 4 18 18 C 1.40189 * 120.00459 * 184.59650 * 17 15 5 19 19 C 1.38857 * 119.99337 * 324.90215 * 18 17 15 20 20 C 1.38056 * 120.00716 * 180.02562 * 19 18 17 21 21 C 1.38898 * 119.99308 * 359.97438 * 20 19 18 22 22 N 1.39922 * 120.00588 * 179.97438 * 21 20 19 23 23 C 1.46901 * 110.99765 * 60.00114 * 22 21 20 24 24 C 1.46898 * 110.99979 * 296.04815 * 22 21 20 25 25 C 1.38858 * 119.99063 * 0.25791 * 21 20 19 26 26 C 1.50701 * 120.00641 * 179.74120 * 25 21 20 27 27 C 1.38094 * 119.99361 * 359.51407 * 25 21 20 28 28 H 1.08997 * 109.47099 * 59.99734 * 1 2 3 29 29 H 1.09003 * 109.46653 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46813 * 299.99495 * 1 2 3 31 31 H 1.08996 * 109.46788 * 60.00319 * 3 2 1 32 32 H 1.09001 * 109.47145 * 300.00199 * 3 2 1 33 33 H 1.09005 * 109.47387 * 305.00428 * 4 3 2 34 34 H 1.08999 * 109.47345 * 185.00480 * 4 3 2 35 35 H 1.08997 * 109.47116 * 29.99739 * 6 5 4 36 36 H 1.09000 * 109.46778 * 150.00196 * 6 5 4 37 37 H 0.97002 * 119.99885 * 179.97438 * 10 9 7 38 38 H 0.97007 * 119.99565 * 4.59298 * 17 15 5 39 39 H 1.08001 * 120.00068 * 0.02562 * 19 18 17 40 40 H 1.07995 * 120.00306 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.46719 * 60.00296 * 23 22 21 42 42 H 1.08990 * 109.47273 * 300.00387 * 23 22 21 43 43 H 1.08996 * 109.46616 * 180.02562 * 23 22 21 44 44 H 1.08996 * 109.47225 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.47443 * 300.00409 * 24 22 21 46 46 H 1.09005 * 109.47016 * 59.99556 * 24 22 21 47 47 H 1.09000 * 109.46907 * 89.99674 * 26 25 21 48 48 H 1.08998 * 109.47437 * 210.00195 * 26 25 21 49 49 H 1.09003 * 109.46939 * 330.00452 * 26 25 21 50 50 H 1.08003 * 120.00019 * 180.21397 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.1052 -0.8919 -1.3429 7 6 5.5010 -1.2976 -0.9451 8 1 6.2199 -0.5457 -0.6546 9 6 5.8607 -2.6286 -0.9530 10 7 4.9855 -3.5442 -1.3072 11 14 7.5906 -3.1316 -0.4592 12 1 8.3760 -1.9218 -0.1060 13 1 7.5262 -4.0403 0.7135 14 1 8.2449 -3.8325 -1.5931 15 6 4.2614 1.3340 -2.3218 16 8 4.6264 0.8192 -3.3612 17 7 4.1418 2.6739 -2.2391 18 6 4.3454 3.4674 -3.3767 19 6 5.3015 3.1028 -4.3153 20 6 5.5027 3.8843 -5.4355 21 6 4.7481 5.0352 -5.6237 22 7 4.9521 5.8278 -6.7587 23 6 4.7003 5.0627 -7.9872 24 6 6.3043 6.4017 -6.7638 25 6 3.7955 5.4023 -4.6826 26 6 2.9807 6.6540 -4.8836 27 6 3.5914 4.6177 -3.5646 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1766 0.0890 35 1 3.3854 -1.3628 -0.6735 36 1 3.9120 -1.2111 -2.3670 37 1 5.2386 -4.4806 -1.3131 38 1 3.9148 3.0892 -1.3923 39 1 5.8879 2.2077 -4.1692 40 1 6.2465 3.6008 -6.1653 41 1 3.6696 4.7079 -7.9893 42 1 5.3781 4.2103 -8.0297 43 1 4.8665 5.7024 -8.8539 44 1 6.4363 7.0127 -7.6567 45 1 6.4400 7.0202 -5.8766 46 1 7.0404 5.5977 -6.7620 47 1 2.0744 6.4123 -5.4387 48 1 2.7120 7.0724 -3.9136 49 1 3.5665 7.3827 -5.4439 50 1 2.8480 4.9012 -2.8343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078487674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:17 Heat of formation + Delta-G solvation = -46.937753 kcal Electronic energy + Delta-G solvation = -29630.088309 eV Core-core repulsion = 25657.432296 eV Total energy + Delta-G solvation = -3972.656013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.81437 -40.60443 -38.86880 -37.80315 -36.55062 -35.46937 -34.60511 -33.31776 -31.13276 -30.30160 -28.68435 -28.47120 -27.71743 -27.11535 -25.55607 -24.59979 -24.03979 -22.93723 -21.90113 -20.62132 -19.37084 -18.61265 -18.10052 -17.68564 -17.26489 -16.99354 -16.75923 -16.50847 -16.30010 -15.96487 -15.73635 -15.51197 -15.21001 -14.89651 -14.79433 -14.43269 -14.18648 -13.96900 -13.74618 -13.64152 -13.42461 -13.31323 -13.08654 -12.95282 -12.89387 -12.81595 -12.76139 -12.60499 -12.56614 -12.51888 -12.18749 -12.10832 -11.96962 -11.67328 -11.23233 -10.90038 -10.62481 -10.54360 -9.69140 -9.54942 -9.46294 -8.87320 -8.18383 -6.33372 0.25315 0.42939 1.35446 1.38004 1.49419 1.70731 2.14217 2.39370 2.77863 2.93189 2.95236 2.99233 3.11248 3.89174 3.99074 4.12466 4.19965 4.23435 4.31237 4.34553 4.41124 4.42986 4.47950 4.51588 4.53286 4.58426 4.63997 4.72360 4.81393 4.86110 4.89436 4.94589 4.97988 4.99623 5.01673 5.06981 5.08336 5.29159 5.38779 5.47724 5.56699 5.58630 5.69084 5.83454 5.93131 5.93307 6.09771 6.10517 6.35777 6.43320 6.76380 7.07139 7.32778 7.63563 8.88229 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.003254 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.554253 B = 8603.562095 C =10469.607276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.416 6.416 3 C 0.045 3.955 4 C 0.104 3.896 5 N -0.604 5.604 6 C 0.289 3.711 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.007 3.993 10 N -0.928 5.928 11 Si 0.967 3.033 12 H -0.268 1.268 13 H -0.268 1.268 14 H -0.283 1.283 15 C 0.693 3.307 16 O -0.621 6.621 17 N -0.676 5.676 18 C 0.159 3.841 19 C -0.143 4.143 20 C -0.130 4.130 21 C 0.056 3.944 22 N -0.502 5.502 23 C 0.026 3.974 24 C 0.026 3.974 25 C -0.046 4.046 26 C -0.095 4.095 27 C -0.138 4.138 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.033 0.967 36 H -0.012 1.012 37 H 0.266 0.734 38 H 0.418 0.582 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.022 0.978 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 24.279 -2.503 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C -0.032 4.032 4 C -0.019 4.019 5 N -0.337 5.337 6 C 0.168 3.832 7 C -0.580 4.580 8 H 0.070 0.930 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.792 3.208 12 H -0.192 1.192 13 H -0.193 1.193 14 H -0.209 1.209 15 C 0.395 3.605 16 O -0.501 6.501 17 N -0.327 5.327 18 C 0.064 3.936 19 C -0.165 4.165 20 C -0.151 4.151 21 C -0.038 4.038 22 N -0.223 5.223 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.047 4.047 26 C -0.152 4.152 27 C -0.159 4.159 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.075 0.925 38 H 0.258 0.742 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.040 0.960 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.482 23.872 -3.180 24.940 hybrid contribution 1.330 -1.711 0.344 2.195 sum -5.152 22.161 -2.837 22.928 Atomic orbital electron populations 1.22847 0.80027 1.03072 1.00776 1.88045 1.21137 1.28828 1.95517 1.23184 0.93248 0.84983 1.01805 1.21852 0.93418 0.99809 0.86837 1.47345 1.67862 1.07717 1.10810 1.18568 0.95500 0.73989 0.95179 1.21794 0.98303 0.92570 1.45360 0.93001 1.25849 1.01778 0.96394 0.95184 1.70086 1.36414 1.01389 1.48877 0.85377 0.79126 0.78293 0.78017 1.19192 1.19346 1.20892 1.16144 0.78753 0.81572 0.84034 1.90858 1.54619 1.73552 1.31079 1.42631 1.74136 1.03721 1.12204 1.17772 0.95154 0.92326 0.88330 1.21102 0.98826 1.00222 0.96312 1.21454 1.00531 0.95825 0.97278 1.18745 0.98009 0.92873 0.94203 1.59798 1.28317 1.33666 1.00522 1.22497 1.01257 0.96785 0.91594 1.22518 0.86641 0.99024 1.03918 1.19864 0.95482 0.97431 0.91949 1.20636 0.98580 0.93028 1.02916 1.20941 1.00151 0.94833 0.99934 0.94010 0.90136 0.91731 0.88534 0.93244 0.89762 0.86589 0.94914 0.99394 0.92543 0.74157 0.87990 0.86433 0.91745 0.96038 0.88788 0.89001 0.91003 0.95953 0.90921 0.90239 0.90315 0.82419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.95 16 2 O -0.42 -14.10 9.53 -148.98 -1.42 -15.52 16 3 C 0.05 1.17 6.28 71.98 0.45 1.62 16 4 C 0.10 3.19 5.62 86.38 0.49 3.67 16 5 N -0.60 -26.64 2.42 -844.20 -2.04 -28.68 16 6 C 0.29 16.38 4.98 85.63 0.43 16.81 16 7 C -0.54 -32.36 9.39 25.60 0.24 -32.12 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.01 0.40 5.46 84.65 0.46 0.86 16 10 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 11 Si 0.97 46.42 29.54 68.60 2.03 48.45 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 15 C 0.69 30.81 8.12 179.06 1.45 32.27 16 16 O -0.62 -34.30 13.36 -4.03 -0.05 -34.36 16 17 N -0.68 -21.65 5.22 -317.02 -1.66 -23.30 16 18 C 0.16 5.02 6.30 38.09 0.24 5.26 16 19 C -0.14 -5.19 8.69 22.37 0.19 -5.00 16 20 C -0.13 -3.91 8.57 22.38 0.19 -3.72 16 21 C 0.06 1.40 4.72 38.16 0.18 1.58 16 22 N -0.50 -10.02 3.93 -744.92 -2.93 -12.95 16 23 C 0.03 0.47 9.35 127.69 1.19 1.66 16 24 C 0.03 0.42 9.39 127.69 1.20 1.62 16 25 C -0.05 -1.01 5.89 -19.75 -0.12 -1.13 16 26 C -0.10 -1.45 9.76 71.24 0.70 -0.75 16 27 C -0.14 -3.20 9.61 22.37 0.22 -2.99 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 2.82 8.07 -2.38 -0.02 2.80 16 34 H 0.12 2.49 6.30 -2.39 -0.02 2.48 16 35 H 0.03 1.93 7.11 -2.39 -0.02 1.92 16 36 H -0.01 -0.80 7.42 -2.39 -0.02 -0.82 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.42 9.62 6.52 -92.70 -0.60 9.01 16 39 H 0.10 4.56 6.22 -2.91 -0.02 4.54 16 40 H 0.12 3.37 7.02 -2.91 -0.02 3.35 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.02 0.43 7.12 -2.39 -0.02 0.41 16 43 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 44 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.02 0.40 7.34 -2.38 -0.02 0.39 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 49 H 0.08 1.20 7.45 -2.39 -0.02 1.18 16 50 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -82.80 405.96 3.30 -79.50 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.33 Total: 23.12 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 8.76 Total: 21.58 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.34 Total: -122.77 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -1.47 Total: -49.88 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -82.80 3.30 -79.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078487674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.560 kcal (2) G-P(sol) polarization free energy of solvation -82.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds