Wall clock time and date at job start Tue Mar 31 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00411 * 2 1 4 4 C 1.52994 * 109.47267 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47432 * 64.99900 * 4 3 2 6 6 C 1.46502 * 120.00003 * 270.00015 * 5 4 3 7 7 C 1.50697 * 109.47181 * 269.99905 * 6 5 4 8 8 H 1.08004 * 120.00228 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99945 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00117 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99763 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47044 * 60.00323 * 11 9 7 13 13 H 1.48504 * 109.47104 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47325 * 299.99947 * 11 9 7 15 15 C 1.34780 * 120.00138 * 90.00013 * 5 4 3 16 16 O 1.21592 * 119.99902 * 180.02562 * 15 5 4 17 17 N 1.34774 * 119.99600 * 0.27525 * 15 5 4 18 18 C 1.40201 * 119.99827 * 174.06881 * 17 15 5 19 19 C 1.38865 * 119.99283 * 335.17191 * 18 17 15 20 20 C 1.38048 * 120.00399 * 179.76446 * 19 18 17 21 21 C 1.38904 * 119.99216 * 0.53611 * 20 19 18 22 22 N 1.39918 * 120.00351 * 179.70060 * 21 20 19 23 23 C 1.46499 * 120.00194 * 180.02562 * 22 21 20 24 24 C 1.46499 * 120.00063 * 0.02562 * 22 21 20 25 25 C 1.38860 * 119.99092 * 359.71935 * 21 20 19 26 26 C 1.38093 * 119.99331 * 0.02562 * 25 21 20 27 27 C 1.50704 * 119.99543 * 179.97438 * 26 25 21 28 28 H 1.09003 * 109.46971 * 59.99971 * 1 2 3 29 29 H 1.08995 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47364 * 300.00413 * 1 2 3 31 31 H 1.09003 * 109.47011 * 59.99596 * 3 2 1 32 32 H 1.08999 * 109.47068 * 300.00122 * 3 2 1 33 33 H 1.08997 * 109.47096 * 304.99459 * 4 3 2 34 34 H 1.09006 * 109.47155 * 185.00231 * 4 3 2 35 35 H 1.09003 * 109.47053 * 29.99767 * 6 5 4 36 36 H 1.08999 * 109.47331 * 150.00099 * 6 5 4 37 37 H 0.97001 * 120.00478 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00500 * 354.07493 * 17 15 5 39 39 H 1.08003 * 119.99755 * 0.02562 * 19 18 17 40 40 H 1.07998 * 120.00621 * 180.25946 * 20 19 18 41 41 H 1.09003 * 109.46868 * 90.00015 * 23 22 21 42 42 H 1.08996 * 109.47332 * 209.99999 * 23 22 21 43 43 H 1.08996 * 109.47175 * 330.00201 * 23 22 21 44 44 H 1.08995 * 109.47714 * 90.00047 * 24 22 21 45 45 H 1.09006 * 109.47359 * 209.99929 * 24 22 21 46 46 H 1.09005 * 109.47183 * 329.99588 * 24 22 21 47 47 H 1.08002 * 119.99657 * 180.02562 * 25 21 20 48 48 H 1.08994 * 109.47344 * 270.02546 * 27 26 25 49 49 H 1.09003 * 109.46889 * 30.02174 * 27 26 25 50 50 H 1.08995 * 109.47008 * 150.01706 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8923 -1.3427 7 6 5.5009 -1.2980 -0.9448 8 1 6.2198 -0.5462 -0.6544 9 6 5.8602 -2.6292 -0.9515 10 7 4.9850 -3.5447 -1.3057 11 14 7.5905 -3.1320 -0.4590 12 1 7.8545 -2.6963 0.9359 13 1 7.7214 -4.6086 -0.5489 14 1 8.5710 -2.4912 -1.3718 15 6 4.2616 1.3335 -2.3218 16 8 4.6265 0.8187 -3.3611 17 7 4.1478 2.6738 -2.2372 18 6 4.5627 3.4813 -3.3056 19 6 5.5241 3.0174 -4.1938 20 6 5.9293 3.8104 -5.2487 21 6 5.3834 5.0768 -5.4151 22 7 5.7985 5.8832 -6.4805 23 6 5.2232 7.2190 -6.6556 24 6 6.8085 5.3916 -7.4210 25 6 4.4260 5.5425 -4.5237 26 6 4.0171 4.7468 -3.4717 27 6 2.9785 5.2525 -2.5039 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0890 35 1 3.3852 -1.3631 -0.6733 36 1 3.9120 -1.2116 -2.3668 37 1 5.2376 -4.4812 -1.3101 38 1 3.7789 3.0798 -1.4373 39 1 5.9517 2.0345 -4.0618 40 1 6.6739 3.4480 -5.9419 41 1 5.8227 7.9473 -6.1094 42 1 5.2161 7.4756 -7.7149 43 1 4.2027 7.2282 -6.2727 44 1 6.3169 4.8728 -8.2438 45 1 7.3808 6.2329 -7.8121 46 1 7.4795 4.7035 -6.9067 47 1 4.0012 6.5270 -4.6532 48 1 3.4704 5.7721 -1.6817 49 1 2.3068 5.9399 -3.0181 50 1 2.4070 4.4112 -2.1120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078488524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:39 Heat of formation + Delta-G solvation = -19.436575 kcal Electronic energy + Delta-G solvation = -29732.303886 eV Core-core repulsion = 25760.840414 eV Total energy + Delta-G solvation = -3971.463473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.35145 -39.00667 -37.61148 -36.54368 -34.84041 -33.73997 -32.48127 -32.32896 -29.59367 -29.32459 -28.50279 -26.95329 -26.30091 -25.92707 -24.52072 -22.76111 -22.68524 -21.82047 -20.13974 -19.18173 -17.87878 -17.11062 -16.52700 -16.39330 -16.09268 -15.70184 -15.43065 -15.13005 -14.82707 -14.74311 -14.40556 -14.09751 -13.86897 -13.75252 -13.57172 -13.22181 -13.13270 -12.78308 -12.49648 -12.31659 -12.23908 -12.15457 -12.02455 -11.91320 -11.79444 -11.68713 -11.60418 -11.18976 -10.88242 -10.87125 -10.81489 -10.36208 -10.24749 -10.03980 -9.55579 -9.44661 -9.10026 -8.72129 -8.46303 -8.30723 -7.61683 -6.75381 -5.91944 -3.96004 1.63571 1.85779 3.13782 3.34425 3.38906 3.42833 3.47179 3.80342 4.02472 4.27139 4.43067 4.57709 4.85843 4.89530 5.05615 5.13087 5.16289 5.26548 5.31660 5.36779 5.41284 5.43357 5.45743 5.50903 5.52071 5.54142 5.56349 5.57505 5.59755 5.65844 5.70796 5.85483 5.86682 5.96020 6.19795 6.30496 6.35566 6.46316 6.68347 6.91949 7.06306 7.26919 7.34480 7.40415 7.60910 7.65889 7.67202 7.82931 8.07019 8.37673 8.70983 9.04459 9.35218 9.68085 11.15722 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.003421 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.052031 B = 8182.496413 C =10291.784345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.111 3.889 5 N -0.599 5.599 6 C 0.265 3.735 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.696 3.304 16 O -0.567 6.567 17 N -0.692 5.692 18 C 0.131 3.869 19 C -0.080 4.080 20 C -0.175 4.175 21 C 0.184 3.816 22 N -0.645 5.645 23 C 0.099 3.901 24 C 0.097 3.903 25 C -0.177 4.177 26 C -0.087 4.087 27 C -0.110 4.110 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.396 0.604 39 H 0.153 0.847 40 H 0.121 0.879 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.120 0.880 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.190 21.683 -3.196 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.036 4.036 4 C -0.014 4.014 5 N -0.334 5.334 6 C 0.146 3.854 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.398 3.602 16 O -0.444 6.444 17 N -0.341 5.341 18 C 0.034 3.966 19 C -0.101 4.101 20 C -0.198 4.198 21 C 0.085 3.915 22 N -0.360 5.360 23 C -0.045 4.045 24 C -0.047 4.047 25 C -0.200 4.200 26 C -0.091 4.091 27 C -0.167 4.167 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.232 0.768 39 H 0.170 0.830 40 H 0.139 0.861 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.137 0.863 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.784 20.893 -4.047 21.812 hybrid contribution 0.509 0.160 0.639 0.833 sum -4.275 21.053 -3.407 21.751 Atomic orbital electron populations 1.22705 0.82006 1.02658 0.99090 1.88107 1.18733 1.26673 1.95116 1.23139 0.95376 0.85683 0.99442 1.21460 0.91149 0.98650 0.90182 1.47550 1.67784 1.09534 1.08486 1.19248 0.96592 0.70632 0.98960 1.21463 0.97556 0.92152 1.45302 0.92707 1.24898 0.97262 0.96406 0.95445 1.69931 1.34324 1.00967 1.48077 0.86610 0.84954 0.77232 0.78868 1.20381 1.21293 1.20299 1.15994 0.79316 0.80138 0.84756 1.90843 1.52714 1.72103 1.28701 1.42957 1.67297 1.05422 1.18453 1.17243 0.97060 0.90605 0.91715 1.21386 0.94452 1.00854 0.93373 1.20601 1.04329 0.93505 1.01327 1.17739 0.94769 0.90644 0.88380 1.46192 1.45139 1.15724 1.28929 1.21522 0.98535 0.83465 1.00954 1.21558 0.91084 0.99567 0.92454 1.20154 1.02079 1.00654 0.97065 1.19223 0.98587 0.93842 0.97420 1.20674 0.96950 1.01039 0.98035 0.94612 0.89702 0.94678 0.93015 0.93854 0.88521 0.90776 0.93532 0.94162 0.92826 0.76778 0.82976 0.86102 0.93933 0.92085 0.91570 0.93756 0.92074 0.91277 0.86254 0.91412 0.91521 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.33 9.53 -35.23 -0.34 -6.66 16 3 C 0.04 0.59 6.28 37.15 0.23 0.82 16 4 C 0.11 1.80 5.53 -4.05 -0.02 1.77 16 5 N -0.60 -12.98 2.42 -180.81 -0.44 -13.42 16 6 C 0.26 7.13 4.98 -5.19 -0.03 7.10 16 7 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 8 H 0.05 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 11 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.70 15.17 8.08 -86.92 -0.70 14.46 16 16 O -0.57 -14.73 13.09 5.28 0.07 -14.66 16 17 N -0.69 -11.69 4.82 -14.17 -0.07 -11.76 16 18 C 0.13 2.19 6.41 -83.59 -0.54 1.65 16 19 C -0.08 -1.44 8.71 -39.42 -0.34 -1.79 16 20 C -0.18 -2.70 9.20 -39.40 -0.36 -3.06 16 21 C 0.18 2.53 6.56 -83.69 -0.55 1.98 16 22 N -0.64 -7.17 3.42 -187.49 -0.64 -7.81 16 23 C 0.10 0.80 10.19 59.85 0.61 1.41 16 24 C 0.10 0.88 10.19 59.85 0.61 1.49 16 25 C -0.18 -2.27 8.86 -39.40 -0.35 -2.62 16 26 C -0.09 -1.18 5.89 -104.46 -0.62 -1.80 16 27 C -0.11 -1.10 9.44 36.01 0.34 -0.76 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.67 8.07 -51.93 -0.42 1.25 16 34 H 0.07 0.95 6.45 -51.93 -0.33 0.61 16 35 H 0.05 1.30 7.12 -51.93 -0.37 0.93 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.40 5.35 5.20 -40.82 -0.21 5.13 16 39 H 0.15 3.24 5.78 -52.48 -0.30 2.93 16 40 H 0.12 1.68 6.14 -52.49 -0.32 1.36 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 43 H 0.07 0.51 6.20 -51.93 -0.32 0.19 16 44 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 46 H 0.07 0.65 6.20 -51.93 -0.32 0.33 16 47 H 0.12 1.24 6.13 -52.49 -0.32 0.92 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 50 H 0.06 0.62 6.97 -51.93 -0.36 0.26 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -35.86 400.76 -8.54 -44.40 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.86 Total: 4.65 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.02 Total: 8.37 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.41 Total: -59.42 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.27 Total: -21.32 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.86 -8.54 -44.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078488524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.963 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds