Wall clock time and date at job start Tue Mar 31 2020 18:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00411 * 2 1 4 4 C 1.52994 * 109.47267 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47432 * 64.99900 * 4 3 2 6 6 C 1.46502 * 120.00003 * 270.00015 * 5 4 3 7 7 C 1.50697 * 109.47181 * 269.99905 * 6 5 4 8 8 H 1.08004 * 120.00228 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99945 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00117 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99763 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47044 * 60.00323 * 11 9 7 13 13 H 1.48504 * 109.47104 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47325 * 299.99947 * 11 9 7 15 15 C 1.34780 * 120.00138 * 90.00013 * 5 4 3 16 16 O 1.21592 * 119.99902 * 180.02562 * 15 5 4 17 17 N 1.34774 * 119.99600 * 0.27525 * 15 5 4 18 18 C 1.40201 * 119.99827 * 174.06881 * 17 15 5 19 19 C 1.38865 * 119.99283 * 335.17191 * 18 17 15 20 20 C 1.38048 * 120.00399 * 179.76446 * 19 18 17 21 21 C 1.38904 * 119.99216 * 0.53611 * 20 19 18 22 22 N 1.39918 * 120.00351 * 179.70060 * 21 20 19 23 23 C 1.46499 * 120.00194 * 180.02562 * 22 21 20 24 24 C 1.46499 * 120.00063 * 0.02562 * 22 21 20 25 25 C 1.38860 * 119.99092 * 359.71935 * 21 20 19 26 26 C 1.38093 * 119.99331 * 0.02562 * 25 21 20 27 27 C 1.50704 * 119.99543 * 179.97438 * 26 25 21 28 28 H 1.09003 * 109.46971 * 59.99971 * 1 2 3 29 29 H 1.08995 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47364 * 300.00413 * 1 2 3 31 31 H 1.09003 * 109.47011 * 59.99596 * 3 2 1 32 32 H 1.08999 * 109.47068 * 300.00122 * 3 2 1 33 33 H 1.08997 * 109.47096 * 304.99459 * 4 3 2 34 34 H 1.09006 * 109.47155 * 185.00231 * 4 3 2 35 35 H 1.09003 * 109.47053 * 29.99767 * 6 5 4 36 36 H 1.08999 * 109.47331 * 150.00099 * 6 5 4 37 37 H 0.97001 * 120.00478 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00500 * 354.07493 * 17 15 5 39 39 H 1.08003 * 119.99755 * 0.02562 * 19 18 17 40 40 H 1.07998 * 120.00621 * 180.25946 * 20 19 18 41 41 H 1.09003 * 109.46868 * 90.00015 * 23 22 21 42 42 H 1.08996 * 109.47332 * 209.99999 * 23 22 21 43 43 H 1.08996 * 109.47175 * 330.00201 * 23 22 21 44 44 H 1.08995 * 109.47714 * 90.00047 * 24 22 21 45 45 H 1.09006 * 109.47359 * 209.99929 * 24 22 21 46 46 H 1.09005 * 109.47183 * 329.99588 * 24 22 21 47 47 H 1.08002 * 119.99657 * 180.02562 * 25 21 20 48 48 H 1.08994 * 109.47344 * 270.02546 * 27 26 25 49 49 H 1.09003 * 109.46889 * 30.02174 * 27 26 25 50 50 H 1.08995 * 109.47008 * 150.01706 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8923 -1.3427 7 6 5.5009 -1.2980 -0.9448 8 1 6.2198 -0.5462 -0.6544 9 6 5.8602 -2.6292 -0.9515 10 7 4.9850 -3.5447 -1.3057 11 14 7.5905 -3.1320 -0.4590 12 1 7.8545 -2.6963 0.9359 13 1 7.7214 -4.6086 -0.5489 14 1 8.5710 -2.4912 -1.3718 15 6 4.2616 1.3335 -2.3218 16 8 4.6265 0.8187 -3.3611 17 7 4.1478 2.6738 -2.2372 18 6 4.5627 3.4813 -3.3056 19 6 5.5241 3.0174 -4.1938 20 6 5.9293 3.8104 -5.2487 21 6 5.3834 5.0768 -5.4151 22 7 5.7985 5.8832 -6.4805 23 6 5.2232 7.2190 -6.6556 24 6 6.8085 5.3916 -7.4210 25 6 4.4260 5.5425 -4.5237 26 6 4.0171 4.7468 -3.4717 27 6 2.9785 5.2525 -2.5039 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0890 35 1 3.3852 -1.3631 -0.6733 36 1 3.9120 -1.2116 -2.3668 37 1 5.2376 -4.4812 -1.3101 38 1 3.7789 3.0798 -1.4373 39 1 5.9517 2.0345 -4.0618 40 1 6.6739 3.4480 -5.9419 41 1 5.8227 7.9473 -6.1094 42 1 5.2161 7.4756 -7.7149 43 1 4.2027 7.2282 -6.2727 44 1 6.3169 4.8728 -8.2438 45 1 7.3808 6.2329 -7.8121 46 1 7.4795 4.7035 -6.9067 47 1 4.0012 6.5270 -4.6532 48 1 3.4704 5.7721 -1.6817 49 1 2.3068 5.9399 -3.0181 50 1 2.4070 4.4112 -2.1120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078488524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:38 Heat of formation + Delta-G solvation = -43.174427 kcal Electronic energy + Delta-G solvation = -29733.333237 eV Core-core repulsion = 25760.840414 eV Total energy + Delta-G solvation = -3972.492823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.77022 -40.26658 -38.82028 -37.66326 -36.52400 -35.25670 -34.43532 -33.41509 -31.10183 -30.42249 -29.41912 -28.63601 -27.25284 -27.10205 -25.74108 -24.55037 -23.97106 -23.07369 -21.24618 -20.68431 -19.29552 -18.60629 -18.35245 -17.67545 -17.22310 -16.94858 -16.74298 -16.47733 -16.24243 -15.88835 -15.73638 -15.62326 -15.08765 -14.92796 -14.73212 -14.46470 -14.28497 -14.12233 -13.65009 -13.56072 -13.36975 -13.31308 -13.07876 -12.97244 -12.93157 -12.84169 -12.75377 -12.72801 -12.56200 -12.51372 -12.15643 -11.99504 -11.94556 -11.69571 -11.47697 -10.82513 -10.59822 -10.52828 -9.92916 -9.58778 -9.38089 -8.17196 -7.82730 -6.30912 0.50928 0.65176 1.36701 1.41742 1.48709 1.80467 2.24214 2.32971 2.42111 2.94020 3.02295 3.05504 3.13778 3.91133 4.03531 4.13263 4.21102 4.22351 4.32233 4.36413 4.40812 4.43873 4.50881 4.54120 4.55832 4.59566 4.67490 4.77959 4.83349 4.87086 4.89147 4.89316 4.92326 4.94839 5.08598 5.12627 5.18627 5.31456 5.32970 5.38962 5.58221 5.62609 5.71636 5.88633 6.06182 6.13633 6.19057 6.37531 6.44574 6.62381 6.78456 7.14884 7.35228 7.71256 8.90366 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.003421 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.052031 B = 8182.496413 C =10291.784345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.045 3.955 4 C 0.103 3.897 5 N -0.606 5.606 6 C 0.290 3.710 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.007 3.993 10 N -0.928 5.928 11 Si 0.967 3.033 12 H -0.260 1.260 13 H -0.278 1.278 14 H -0.280 1.280 15 C 0.691 3.309 16 O -0.621 6.621 17 N -0.668 5.668 18 C 0.095 3.905 19 C -0.107 4.107 20 C -0.193 4.193 21 C 0.190 3.810 22 N -0.647 5.647 23 C 0.091 3.909 24 C 0.090 3.910 25 C -0.176 4.176 26 C -0.071 4.071 27 C -0.111 4.111 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.032 0.968 36 H -0.012 1.012 37 H 0.266 0.734 38 H 0.414 0.586 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.154 0.846 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 25.764 -2.278 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C -0.033 4.033 4 C -0.020 4.020 5 N -0.340 5.340 6 C 0.169 3.831 7 C -0.582 4.582 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.791 3.209 12 H -0.184 1.184 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.393 3.607 16 O -0.502 6.502 17 N -0.319 5.319 18 C -0.001 4.001 19 C -0.128 4.128 20 C -0.216 4.216 21 C 0.088 3.912 22 N -0.360 5.360 23 C -0.051 4.051 24 C -0.053 4.053 25 C -0.198 4.198 26 C -0.074 4.074 27 C -0.167 4.167 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.050 0.950 36 H 0.006 0.994 37 H 0.075 0.925 38 H 0.253 0.747 39 H 0.125 0.875 40 H 0.141 0.859 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.172 0.828 48 H 0.110 0.890 49 H 0.108 0.892 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.301 25.078 -3.106 25.820 hybrid contribution 0.641 -0.965 0.227 1.180 sum -4.660 24.114 -2.879 24.728 Atomic orbital electron populations 1.22853 0.80020 1.03088 1.00793 1.88046 1.21142 1.28755 1.95508 1.23192 0.93232 0.85047 1.01783 1.21832 0.93417 0.99766 0.86972 1.47342 1.68258 1.07742 1.10608 1.18542 0.95429 0.74049 0.95120 1.21744 0.98345 0.92555 1.45506 0.93076 1.25841 1.01775 0.96347 0.95177 1.70066 1.36554 1.01375 1.48794 0.85494 0.79133 0.77139 0.79153 1.18428 1.20278 1.20521 1.16170 0.78957 0.81653 0.83932 1.90814 1.54935 1.73593 1.30830 1.42517 1.66659 1.03311 1.19409 1.17443 0.98373 0.92107 0.92191 1.21124 0.96269 0.99705 0.95685 1.20589 1.05294 0.94652 1.01052 1.17889 0.94178 0.90023 0.89091 1.46511 1.45037 1.16479 1.28022 1.21767 0.98895 0.81785 1.02620 1.21699 0.90920 1.00591 0.92062 1.20563 1.01330 1.01820 0.96106 1.19622 0.98056 0.91963 0.97807 1.20803 0.96274 1.01643 0.98013 0.94002 0.90123 0.91692 0.88438 0.93321 0.89792 0.86886 0.94997 0.99422 0.92539 0.74656 0.87544 0.85945 0.92715 0.90147 0.90847 0.93581 0.89400 0.92257 0.82815 0.89038 0.89198 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -14.31 9.53 -148.98 -1.42 -15.73 16 3 C 0.04 1.19 6.28 71.98 0.45 1.65 16 4 C 0.10 3.31 5.53 86.38 0.48 3.78 16 5 N -0.61 -27.52 2.42 -844.21 -2.04 -29.56 16 6 C 0.29 16.72 4.98 85.63 0.43 17.15 16 7 C -0.54 -32.93 9.39 25.60 0.24 -32.69 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.01 0.44 5.46 84.66 0.46 0.90 16 10 N -0.93 -58.73 13.29 21.45 0.28 -58.45 16 11 Si 0.97 46.89 29.54 68.60 2.03 48.92 16 12 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 15 C 0.69 31.85 8.08 179.05 1.45 33.30 16 16 O -0.62 -35.21 13.09 -4.01 -0.05 -35.27 16 17 N -0.67 -22.83 4.82 -317.02 -1.53 -24.35 16 18 C 0.10 3.22 6.41 38.09 0.24 3.46 16 19 C -0.11 -4.15 8.71 22.37 0.19 -3.95 16 20 C -0.19 -6.22 9.20 22.38 0.21 -6.01 16 21 C 0.19 4.96 6.56 38.16 0.25 5.21 16 22 N -0.65 -12.84 3.42 -747.09 -2.55 -15.39 16 23 C 0.09 1.12 10.19 127.77 1.30 2.43 16 24 C 0.09 1.50 10.19 127.77 1.30 2.81 16 25 C -0.18 -3.99 8.86 22.38 0.20 -3.80 16 26 C -0.07 -1.77 5.89 -19.76 -0.12 -1.89 16 27 C -0.11 -1.75 9.44 71.24 0.67 -1.08 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 34 H 0.11 2.66 6.45 -2.38 -0.02 2.64 16 35 H 0.03 1.91 7.12 -2.39 -0.02 1.89 16 36 H -0.01 -0.83 7.42 -2.39 -0.02 -0.85 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.41 10.53 5.20 -92.71 -0.48 10.05 16 39 H 0.11 5.10 5.78 -2.91 -0.02 5.08 16 40 H 0.12 3.69 6.14 -2.91 -0.02 3.67 16 41 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.08 0.71 8.07 -2.39 -0.02 0.69 16 43 H 0.07 0.81 6.20 -2.39 -0.01 0.79 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.09 1.00 8.07 -2.38 -0.02 0.98 16 46 H 0.06 1.11 6.20 -2.38 -0.01 1.09 16 47 H 0.15 2.43 6.13 -2.91 -0.02 2.41 16 48 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 50 H 0.06 1.01 6.97 -2.39 -0.02 1.00 16 Total: -1.00 -86.20 400.76 4.19 -82.01 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.46 Total: 24.60 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 9.01 Total: 23.23 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -5.84 Total: -127.75 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -1.47 Total: -51.00 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -86.20 4.19 -82.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078488524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.836 kcal (2) G-P(sol) polarization free energy of solvation -86.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds