Wall clock time and date at job start Tue Mar 31 2020 18:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38275 * 119.91235 * 2 1 4 4 C 1.38206 * 120.16319 * 180.02562 * 3 2 1 5 5 C 1.38709 * 119.98375 * 0.02562 * 4 3 2 6 6 N 1.40166 * 120.08618 * 180.27703 * 5 4 3 7 7 C 1.34779 * 120.00298 * 325.88736 * 6 5 4 8 8 O 1.21595 * 119.99605 * 4.74571 * 7 6 5 9 9 N 1.34770 * 120.00441 * 184.75765 * 7 6 5 10 10 C 1.46501 * 119.99739 * 359.97438 * 9 7 6 11 11 C 1.46502 * 120.00267 * 179.97438 * 9 7 6 12 12 C 1.50700 * 109.47166 * 89.99454 * 11 9 7 13 13 H 1.08000 * 120.00049 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00199 * 180.02562 * 12 11 9 15 15 N 1.31510 * 120.00346 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99575 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47027 * 90.00420 * 16 14 12 18 18 H 1.48508 * 109.47005 * 209.99969 * 16 14 12 19 19 H 1.48494 * 109.47185 * 330.00219 * 16 14 12 20 20 C 1.39284 * 119.82568 * 359.97438 * 5 4 3 21 21 O 1.35980 * 120.07947 * 180.02562 * 20 5 4 22 22 C 1.42899 * 116.99841 * 180.02562 * 21 20 5 23 23 C 1.52997 * 109.47257 * 180.02562 * 22 21 20 24 24 N 1.46897 * 109.47650 * 65.15924 * 23 22 21 25 25 C 1.46900 * 111.00016 * 75.54908 * 24 23 22 26 26 C 1.46895 * 111.00420 * 199.50815 * 24 23 22 27 27 C 1.38252 * 119.91275 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47361 * 269.97932 * 1 2 3 29 29 H 1.08997 * 109.47312 * 29.97507 * 1 2 3 30 30 H 1.08999 * 109.47443 * 149.98235 * 1 2 3 31 31 H 1.08004 * 119.91604 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.00612 * 180.02562 * 4 3 2 33 33 H 0.97005 * 120.00060 * 145.88334 * 6 5 4 34 34 H 1.08995 * 109.46847 * 90.00801 * 10 9 7 35 35 H 1.09003 * 109.47343 * 210.00709 * 10 9 7 36 36 H 1.08999 * 109.47274 * 330.00277 * 10 9 7 37 37 H 1.08996 * 109.46992 * 209.99197 * 11 9 7 38 38 H 1.08993 * 109.46693 * 329.99458 * 11 9 7 39 39 H 0.96999 * 119.99876 * 179.97438 * 15 14 12 40 40 H 1.09007 * 109.47252 * 300.00151 * 22 21 20 41 41 H 1.08999 * 109.47098 * 60.00230 * 22 21 20 42 42 H 1.09005 * 109.47378 * 185.16342 * 23 22 21 43 43 H 1.09011 * 109.46937 * 305.16052 * 23 22 21 44 44 H 1.09006 * 109.46876 * 60.00016 * 25 24 23 45 45 H 1.09001 * 109.47349 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.47229 * 300.00747 * 25 24 23 47 47 H 1.08996 * 109.47539 * 55.03510 * 26 24 23 48 48 H 1.08998 * 109.47552 * 175.03797 * 26 24 23 49 49 H 1.09005 * 109.46778 * 295.03667 * 26 24 23 50 50 H 1.08001 * 119.99141 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1985 0.0000 4 6 3.5785 1.2046 -0.0005 5 6 4.2770 0.0062 -0.0016 6 7 5.6786 0.0098 0.0037 7 6 6.3526 0.9799 -0.6453 8 8 5.7473 1.8992 -1.1622 9 7 7.6972 0.9311 -0.7217 10 6 8.4265 -0.1763 -0.0987 11 6 8.4297 1.9853 -1.4276 12 6 8.7763 3.0892 -0.4621 13 1 8.4802 3.0133 0.5738 14 6 9.4705 4.1965 -0.9012 15 7 9.7734 5.1596 -0.0585 16 14 9.9820 4.3281 -2.6930 17 1 8.9084 5.0028 -3.4660 18 1 11.2354 5.1182 -2.7933 19 1 10.2088 2.9680 -3.2442 20 6 3.5818 -1.2008 -0.0016 21 8 4.2614 -2.3786 -0.0021 22 6 3.4826 -3.5768 -0.0027 23 6 4.4142 -4.7905 -0.0026 24 7 5.1734 -4.8250 1.2545 25 6 4.3308 -5.2862 2.3659 26 6 6.3738 -5.6613 1.1217 27 6 2.1964 -1.1984 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6537 2.1323 0.0004 32 1 4.1146 2.1422 -0.0001 33 1 6.1637 -0.6859 0.4746 34 1 8.5383 -0.9878 -0.8177 35 1 9.4114 0.1686 0.2160 36 1 7.8723 -0.5337 0.7693 37 1 9.3452 1.5712 -1.8499 38 1 7.8084 2.3852 -2.2289 39 1 10.2621 5.9385 -0.3674 40 1 2.8537 -3.6018 0.8873 41 1 2.8538 -3.6010 -0.8927 42 1 3.8235 -5.7019 -0.0955 43 1 5.1052 -4.7182 -0.8425 44 1 3.9639 -6.2900 2.1515 45 1 4.9175 -5.3019 3.2845 46 1 3.4856 -4.6086 2.4866 47 1 6.9708 -5.3091 0.2806 48 1 6.9630 -5.5992 2.0367 49 1 6.0783 -6.6963 0.9495 50 1 1.6548 -2.1328 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085601513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:08 Heat of formation + Delta-G solvation = -16.920625 kcal Electronic energy + Delta-G solvation = -29521.119291 eV Core-core repulsion = 25549.764918 eV Total energy + Delta-G solvation = -3971.354373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.56474 -39.29834 -38.08694 -36.92804 -35.17925 -34.42028 -32.50471 -31.23542 -30.73228 -29.42952 -28.39126 -27.92821 -26.52363 -25.56403 -24.68118 -22.79163 -22.42272 -21.25864 -20.96078 -19.26348 -18.15926 -17.35846 -16.90188 -16.71803 -16.57190 -15.82137 -15.43067 -15.15688 -14.91572 -14.80824 -14.63364 -14.10828 -13.91781 -13.64369 -13.52881 -13.34671 -13.21880 -12.86289 -12.76477 -12.68149 -12.35749 -12.32561 -12.18268 -12.04270 -11.97493 -11.75673 -11.64626 -11.40143 -11.32096 -10.97693 -10.87625 -10.76666 -10.47168 -10.13516 -9.80324 -9.50368 -9.18446 -8.69723 -8.53659 -8.35422 -7.76036 -7.33667 -6.03399 -4.01682 1.49969 1.61761 3.10058 3.27879 3.34746 3.40467 3.42291 3.56058 3.73206 4.11834 4.44312 4.51513 4.56459 4.66838 4.81983 4.88525 4.97531 4.99137 5.01072 5.06249 5.19754 5.23546 5.27634 5.29238 5.41724 5.43257 5.54487 5.57292 5.57705 5.60231 5.69769 5.72083 5.88873 5.91545 6.08583 6.16495 6.34753 6.45327 6.62075 6.64642 6.66872 6.74784 6.89250 6.95826 7.14031 7.33867 7.57130 7.60824 7.69824 8.53550 8.57943 9.00407 9.26260 9.57364 11.10105 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.003263 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.641491 B = 8579.645450 C =10633.220380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.078 4.078 3 C -0.137 4.137 4 C -0.084 4.084 5 C 0.149 3.851 6 N -0.685 5.685 7 C 0.702 3.298 8 O -0.573 6.573 9 N -0.608 5.608 10 C 0.086 3.914 11 C 0.231 3.769 12 C -0.528 4.528 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.876 3.124 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.099 3.901 21 O -0.299 6.299 22 C 0.069 3.931 23 C 0.054 3.946 24 N -0.540 5.540 25 C 0.021 3.979 26 C 0.025 3.975 27 C -0.195 4.195 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.154 0.846 33 H 0.406 0.594 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.024 0.976 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.023 0.977 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.855 -23.666 2.393 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 C -0.156 4.156 4 C -0.104 4.104 5 C 0.052 3.948 6 N -0.335 5.335 7 C 0.404 3.596 8 O -0.450 6.450 9 N -0.343 5.343 10 C -0.059 4.059 11 C 0.110 3.890 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.191 1.191 20 C 0.051 3.949 21 O -0.212 6.212 22 C -0.007 4.007 23 C -0.074 4.074 24 N -0.264 5.264 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.215 4.215 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.171 0.829 33 H 0.244 0.756 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.041 0.959 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.691 -22.365 2.090 26.840 hybrid contribution 0.161 -1.112 -0.701 1.325 sum -14.529 -23.477 1.388 27.644 Atomic orbital electron populations 1.20722 0.91439 1.02412 1.01955 1.19589 0.95665 0.92548 1.00151 1.20854 0.93638 0.97377 1.03712 1.21400 0.93794 0.98014 0.97199 1.16875 0.82404 0.90814 1.04699 1.42696 1.03934 1.31119 1.55722 1.15846 0.82254 0.82019 0.79509 1.90858 1.67052 1.34924 1.52158 1.47091 1.03386 1.26432 1.57390 1.21596 0.98459 0.89291 0.96511 1.19595 0.90806 0.85577 0.93026 1.21376 1.35723 1.02220 0.97332 0.90744 1.24847 0.95435 0.95277 0.97467 1.69900 1.40271 1.08776 1.34770 0.86852 0.78348 0.78677 0.85793 1.19891 1.21146 1.19058 1.18712 0.90459 0.84751 1.00989 1.86115 1.34695 1.11424 1.88979 1.22736 0.93692 0.83351 1.00961 1.22208 0.96936 0.95131 0.93141 1.61884 1.07476 1.52759 1.04248 1.22465 0.97720 0.97956 0.94541 1.22406 0.92535 0.94247 1.03089 1.20746 0.91908 0.98518 1.10298 0.91468 0.91562 0.92069 0.85884 0.82873 0.75626 0.93611 0.90233 0.92725 0.95090 0.94403 0.92619 0.92202 0.91913 0.92586 0.89559 0.95739 0.91123 0.91341 0.91037 0.91106 0.95867 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.08 -0.98 5.88 -104.61 -0.62 -1.59 16 3 C -0.14 -1.98 9.69 -39.58 -0.38 -2.36 16 4 C -0.08 -1.48 8.71 -39.42 -0.34 -1.82 16 5 C 0.15 2.57 6.33 -83.48 -0.53 2.04 16 6 N -0.68 -12.39 5.08 -14.10 -0.07 -12.46 16 7 C 0.70 15.57 8.13 -86.92 -0.71 14.86 16 8 O -0.57 -14.74 13.29 5.28 0.07 -14.66 16 9 N -0.61 -13.22 2.86 -188.74 -0.54 -13.76 16 10 C 0.09 1.40 10.24 59.85 0.61 2.01 16 11 C 0.23 5.81 4.23 -5.19 -0.02 5.78 16 12 C -0.53 -15.45 9.94 -34.44 -0.34 -15.80 16 13 H 0.07 2.40 8.06 -52.49 -0.42 1.97 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 16 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 17 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 20 C 0.10 1.43 6.70 -39.08 -0.26 1.16 16 21 O -0.30 -3.87 9.63 -19.68 -0.19 -4.06 16 22 C 0.07 0.62 4.93 37.16 0.18 0.80 16 23 C 0.05 0.42 5.38 -3.83 -0.02 0.40 16 24 N -0.54 -4.68 4.90 -251.26 -1.23 -5.91 16 25 C 0.02 0.15 9.40 60.06 0.56 0.72 16 26 C 0.03 0.18 9.56 60.06 0.57 0.76 16 27 C -0.20 -2.42 8.69 -39.46 -0.34 -2.76 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.14 16 30 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 32 H 0.15 3.14 6.13 -52.48 -0.32 2.82 16 33 H 0.41 6.43 6.25 -40.82 -0.25 6.17 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 36 H 0.05 0.77 6.30 -51.93 -0.33 0.44 16 37 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 38 H 0.04 1.02 6.85 -51.93 -0.36 0.66 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.06 0.49 6.29 -51.92 -0.33 0.17 16 41 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 42 H 0.06 0.33 7.96 -51.93 -0.41 -0.08 16 43 H 0.09 0.70 7.82 -51.92 -0.41 0.29 16 44 H 0.02 0.15 8.09 -51.93 -0.42 -0.27 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.49 6.79 -51.93 -0.35 0.13 16 47 H 0.07 0.52 7.95 -51.93 -0.41 0.11 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 50 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -35.50 402.13 -9.24 -44.74 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.07 Total: 4.52 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -1.37 Total: 5.61 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -1.07 Total: -59.42 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.12 Total: -18.73 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.50 -9.24 -44.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085601513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.820 kcal (2) G-P(sol) polarization free energy of solvation -35.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds