Wall clock time and date at job start Tue Mar 31 2020 18:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38275 * 119.91235 * 2 1 4 4 C 1.38206 * 120.16319 * 180.02562 * 3 2 1 5 5 C 1.38709 * 119.98375 * 0.02562 * 4 3 2 6 6 N 1.40166 * 120.08618 * 180.27703 * 5 4 3 7 7 C 1.34779 * 120.00298 * 325.88736 * 6 5 4 8 8 O 1.21595 * 119.99605 * 4.74571 * 7 6 5 9 9 N 1.34770 * 120.00441 * 184.75765 * 7 6 5 10 10 C 1.46501 * 119.99739 * 359.97438 * 9 7 6 11 11 C 1.46502 * 120.00267 * 179.97438 * 9 7 6 12 12 C 1.50700 * 109.47166 * 89.99454 * 11 9 7 13 13 H 1.08000 * 120.00049 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00199 * 180.02562 * 12 11 9 15 15 N 1.31510 * 120.00346 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99575 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47027 * 90.00420 * 16 14 12 18 18 H 1.48508 * 109.47005 * 209.99969 * 16 14 12 19 19 H 1.48494 * 109.47185 * 330.00219 * 16 14 12 20 20 C 1.39284 * 119.82568 * 359.97438 * 5 4 3 21 21 O 1.35980 * 120.07947 * 180.02562 * 20 5 4 22 22 C 1.42899 * 116.99841 * 180.02562 * 21 20 5 23 23 C 1.52997 * 109.47257 * 180.02562 * 22 21 20 24 24 N 1.46897 * 109.47650 * 65.15924 * 23 22 21 25 25 C 1.46900 * 111.00016 * 75.54908 * 24 23 22 26 26 C 1.46895 * 111.00420 * 199.50815 * 24 23 22 27 27 C 1.38252 * 119.91275 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47361 * 269.97932 * 1 2 3 29 29 H 1.08997 * 109.47312 * 29.97507 * 1 2 3 30 30 H 1.08999 * 109.47443 * 149.98235 * 1 2 3 31 31 H 1.08004 * 119.91604 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.00612 * 180.02562 * 4 3 2 33 33 H 0.97005 * 120.00060 * 145.88334 * 6 5 4 34 34 H 1.08995 * 109.46847 * 90.00801 * 10 9 7 35 35 H 1.09003 * 109.47343 * 210.00709 * 10 9 7 36 36 H 1.08999 * 109.47274 * 330.00277 * 10 9 7 37 37 H 1.08996 * 109.46992 * 209.99197 * 11 9 7 38 38 H 1.08993 * 109.46693 * 329.99458 * 11 9 7 39 39 H 0.96999 * 119.99876 * 179.97438 * 15 14 12 40 40 H 1.09007 * 109.47252 * 300.00151 * 22 21 20 41 41 H 1.08999 * 109.47098 * 60.00230 * 22 21 20 42 42 H 1.09005 * 109.47378 * 185.16342 * 23 22 21 43 43 H 1.09011 * 109.46937 * 305.16052 * 23 22 21 44 44 H 1.09006 * 109.46876 * 60.00016 * 25 24 23 45 45 H 1.09001 * 109.47349 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.47229 * 300.00747 * 25 24 23 47 47 H 1.08996 * 109.47539 * 55.03510 * 26 24 23 48 48 H 1.08998 * 109.47552 * 175.03797 * 26 24 23 49 49 H 1.09005 * 109.46778 * 295.03667 * 26 24 23 50 50 H 1.08001 * 119.99141 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1985 0.0000 4 6 3.5785 1.2046 -0.0005 5 6 4.2770 0.0062 -0.0016 6 7 5.6786 0.0098 0.0037 7 6 6.3526 0.9799 -0.6453 8 8 5.7473 1.8992 -1.1622 9 7 7.6972 0.9311 -0.7217 10 6 8.4265 -0.1763 -0.0987 11 6 8.4297 1.9853 -1.4276 12 6 8.7763 3.0892 -0.4621 13 1 8.4802 3.0133 0.5738 14 6 9.4705 4.1965 -0.9012 15 7 9.7734 5.1596 -0.0585 16 14 9.9820 4.3281 -2.6930 17 1 8.9084 5.0028 -3.4660 18 1 11.2354 5.1182 -2.7933 19 1 10.2088 2.9680 -3.2442 20 6 3.5818 -1.2008 -0.0016 21 8 4.2614 -2.3786 -0.0021 22 6 3.4826 -3.5768 -0.0027 23 6 4.4142 -4.7905 -0.0026 24 7 5.1734 -4.8250 1.2545 25 6 4.3308 -5.2862 2.3659 26 6 6.3738 -5.6613 1.1217 27 6 2.1964 -1.1984 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6537 2.1323 0.0004 32 1 4.1146 2.1422 -0.0001 33 1 6.1637 -0.6859 0.4746 34 1 8.5383 -0.9878 -0.8177 35 1 9.4114 0.1686 0.2160 36 1 7.8723 -0.5337 0.7693 37 1 9.3452 1.5712 -1.8499 38 1 7.8084 2.3852 -2.2289 39 1 10.2621 5.9385 -0.3674 40 1 2.8537 -3.6018 0.8873 41 1 2.8538 -3.6010 -0.8927 42 1 3.8235 -5.7019 -0.0955 43 1 5.1052 -4.7182 -0.8425 44 1 3.9639 -6.2900 2.1515 45 1 4.9175 -5.3019 3.2845 46 1 3.4856 -4.6086 2.4866 47 1 6.9708 -5.3091 0.2806 48 1 6.9630 -5.5992 2.0367 49 1 6.0783 -6.6963 0.9495 50 1 1.6548 -2.1328 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085601513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:06 Heat of formation + Delta-G solvation = -41.885761 kcal Electronic energy + Delta-G solvation = -29522.201860 eV Core-core repulsion = 25549.764918 eV Total energy + Delta-G solvation = -3972.436942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.85762 -40.63622 -38.96929 -37.73078 -36.82179 -35.97928 -34.65677 -32.42912 -31.59409 -30.40064 -30.23756 -28.44766 -27.76158 -26.97421 -25.43327 -24.52064 -23.54310 -22.35749 -21.83383 -20.82496 -19.51981 -19.13552 -18.56235 -18.03312 -17.28801 -16.95536 -16.70593 -16.49927 -16.01076 -15.82946 -15.66657 -15.50214 -15.12505 -15.03734 -14.82552 -14.47064 -14.35110 -14.23847 -13.99834 -13.67078 -13.43400 -13.28451 -13.26058 -13.19182 -13.00500 -12.82554 -12.58941 -12.53264 -12.52203 -12.39304 -12.29507 -12.03272 -11.80313 -11.73744 -11.62154 -11.22201 -10.86748 -10.80637 -9.58371 -9.39340 -9.24152 -8.60401 -8.32394 -6.37679 0.33809 0.49026 1.33984 1.39150 1.47363 1.72541 2.16668 2.24948 2.32857 2.85028 3.00464 3.02351 3.05804 3.82592 3.97331 4.01938 4.13504 4.18600 4.27039 4.31281 4.35154 4.43110 4.48989 4.51365 4.57452 4.60067 4.67232 4.74642 4.76851 4.80987 4.85309 4.86490 4.91512 4.91980 4.94972 5.06380 5.07330 5.12402 5.24511 5.36952 5.45816 5.56604 5.65492 5.70604 5.91996 6.00121 6.08650 6.13107 6.28242 6.55789 6.63105 7.00700 7.23930 7.60725 8.84834 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.003263 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.641491 B = 8579.645450 C =10633.220380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.066 4.066 3 C -0.149 4.149 4 C -0.108 4.108 5 C 0.108 3.892 6 N -0.669 5.669 7 C 0.694 3.306 8 O -0.619 6.619 9 N -0.618 5.618 10 C 0.082 3.918 11 C 0.241 3.759 12 C -0.537 4.537 13 H 0.025 0.975 14 C 0.011 3.989 15 N -0.946 5.946 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.274 1.274 19 H -0.236 1.236 20 C 0.109 3.891 21 O -0.312 6.312 22 C 0.060 3.940 23 C 0.056 3.944 24 N -0.564 5.564 25 C 0.022 3.978 26 C 0.027 3.973 27 C -0.189 4.189 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.416 0.584 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.269 0.731 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.034 0.966 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.492 -27.187 1.194 31.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.067 4.067 3 C -0.168 4.168 4 C -0.129 4.129 5 C 0.013 3.987 6 N -0.319 5.319 7 C 0.396 3.604 8 O -0.500 6.500 9 N -0.352 5.352 10 C -0.061 4.061 11 C 0.119 3.881 12 C -0.576 4.576 13 H 0.044 0.956 14 C -0.187 4.187 15 N -0.586 5.586 16 Si 0.773 3.227 17 H -0.202 1.202 18 H -0.199 1.199 19 H -0.159 1.159 20 C 0.061 3.939 21 O -0.225 6.225 22 C -0.015 4.015 23 C -0.072 4.072 24 N -0.289 5.289 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.208 4.208 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.255 0.745 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.053 0.947 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.339 -25.974 0.932 30.700 hybrid contribution 0.534 -0.108 -0.184 0.575 sum -15.805 -26.082 0.748 30.506 Atomic orbital electron populations 1.20816 0.88288 1.03864 1.03411 1.20037 0.97808 0.91554 0.97257 1.21022 0.92366 0.99215 1.04159 1.21176 0.95301 0.96806 0.99638 1.17102 0.81797 0.92094 1.07721 1.42391 1.04527 1.30137 1.54860 1.16085 0.82428 0.82298 0.79581 1.90820 1.68109 1.36889 1.54170 1.47095 1.03566 1.26940 1.57614 1.21860 0.97915 0.88386 0.97899 1.19280 0.91557 0.85521 0.91756 1.21581 1.35717 1.04263 0.96033 0.95630 1.25861 0.95286 0.94558 1.02999 1.70056 1.41401 1.09682 1.37508 0.85683 0.77954 0.80244 0.78841 1.20245 1.19877 1.15907 1.18687 0.91113 0.84448 0.99670 1.86113 1.35933 1.11911 1.88577 1.23087 0.94149 0.81945 1.02321 1.22226 0.96928 0.95428 0.92610 1.61876 1.08264 1.53739 1.04995 1.22462 0.97459 0.98587 0.94063 1.22385 0.92157 0.94692 1.02890 1.21167 0.91052 1.00025 1.08590 0.89821 0.90988 0.89839 0.84781 0.87142 0.74481 0.90352 0.90542 0.90817 0.92558 0.96172 0.92247 0.90994 0.90160 0.90185 0.90171 0.94447 0.91320 0.91428 0.91473 0.91199 0.94742 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.23 0.71 -0.80 16 2 C -0.07 -1.48 5.88 -19.85 -0.12 -1.60 16 3 C -0.15 -4.35 9.69 22.27 0.22 -4.13 16 4 C -0.11 -4.09 8.71 22.37 0.19 -3.89 16 5 C 0.11 3.84 6.33 38.17 0.24 4.09 16 6 N -0.67 -25.01 5.08 -316.80 -1.61 -26.62 16 7 C 0.69 32.26 8.13 179.06 1.46 33.71 16 8 O -0.62 -34.06 13.29 -4.02 -0.05 -34.12 16 9 N -0.62 -27.45 2.86 -869.32 -2.48 -29.93 16 10 C 0.08 2.62 10.24 127.77 1.31 3.92 16 11 C 0.24 12.34 4.23 85.63 0.36 12.70 16 12 C -0.54 -32.84 9.94 25.60 0.25 -32.58 16 13 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 14 C 0.01 0.65 5.47 84.66 0.46 1.12 16 15 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 16 Si 0.95 45.52 27.47 68.60 1.88 47.41 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 20 C 0.11 3.01 6.70 22.59 0.15 3.16 16 21 O -0.31 -7.46 9.63 -93.32 -0.90 -8.36 16 22 C 0.06 0.88 4.93 71.98 0.35 1.24 16 23 C 0.06 0.71 5.38 86.30 0.46 1.17 16 24 N -0.56 -8.52 4.90 -948.84 -4.65 -13.17 16 25 C 0.02 0.26 9.40 127.69 1.20 1.46 16 26 C 0.03 0.34 9.56 127.69 1.22 1.56 16 27 C -0.19 -4.12 8.69 22.35 0.19 -3.92 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 31 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.11 5.07 6.13 -2.91 -0.02 5.05 16 33 H 0.42 13.27 6.25 -92.70 -0.58 12.70 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 36 H 0.07 2.04 6.30 -2.39 -0.02 2.03 16 37 H 0.06 2.59 7.13 -2.39 -0.02 2.58 16 38 H 0.02 1.10 6.85 -2.39 -0.02 1.09 16 39 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 40 H 0.07 0.90 6.29 -2.38 -0.01 0.88 16 41 H 0.08 0.92 7.66 -2.39 -0.02 0.90 16 42 H 0.08 0.64 7.96 -2.38 -0.02 0.62 16 43 H 0.08 1.11 7.82 -2.38 -0.02 1.09 16 44 H 0.04 0.34 8.09 -2.38 -0.02 0.32 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 0.78 6.79 -2.39 -0.02 0.77 16 47 H 0.07 0.88 7.95 -2.39 -0.02 0.86 16 48 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.03 0.35 8.14 -2.38 -0.02 0.33 16 50 H 0.16 2.26 6.30 -2.91 -0.02 2.25 16 Total: -1.00 -83.17 402.13 1.47 -81.69 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.30 Total: 26.91 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 8.68 Total: 17.19 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -8.44 Total: -130.72 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.95 Total: -42.48 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -83.17 1.47 -81.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085601513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.808 kcal (2) G-P(sol) polarization free energy of solvation -83.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds