Wall clock time and date at job start Tue Mar 31 2020 20:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30350 * 126.00725 * 2 1 4 4 N 1.39903 * 109.04365 * 179.97438 * 3 2 1 5 5 C 1.46505 * 125.69395 * 180.02562 * 4 3 2 6 6 C 1.34117 * 108.60759 * 359.72770 * 4 3 2 7 7 C 1.50708 * 126.33062 * 180.28276 * 6 4 3 8 8 C 1.38621 * 107.33959 * 0.43113 * 6 4 3 9 9 C 1.46925 * 126.49184 * 179.83744 * 8 6 4 10 10 O 1.21417 * 119.99603 * 354.05458 * 9 8 6 11 11 C 1.49301 * 120.00013 * 174.06013 * 9 8 6 12 12 O 1.21370 * 120.00060 * 276.10063 * 11 9 8 13 13 N 1.34774 * 120.00236 * 95.82106 * 11 9 8 14 14 C 1.46503 * 120.00172 * 355.31958 * 13 11 9 15 15 C 1.50690 * 109.47390 * 94.82584 * 14 13 11 16 16 H 1.08003 * 120.00497 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00289 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99340 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00255 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46658 * 90.00603 * 19 17 15 21 21 H 1.48499 * 109.46884 * 210.00369 * 19 17 15 22 22 H 1.48490 * 109.47349 * 330.00684 * 19 17 15 23 23 C 1.46498 * 120.00269 * 175.31009 * 13 11 9 24 24 C 1.53005 * 109.46960 * 90.00264 * 23 13 11 25 25 C 1.52995 * 109.47151 * 180.02562 * 24 23 13 26 26 C 1.53007 * 109.47112 * 175.00201 * 25 24 23 27 27 C 1.53000 * 109.47251 * 294.99809 * 25 24 23 28 28 H 1.08998 * 109.47459 * 273.39179 * 1 2 3 29 29 H 1.09006 * 109.46669 * 33.39337 * 1 2 3 30 30 H 1.09005 * 109.47312 * 153.38909 * 1 2 3 31 31 H 1.09004 * 109.47258 * 89.97692 * 5 4 3 32 32 H 1.09004 * 109.46859 * 209.97878 * 5 4 3 33 33 H 1.09001 * 109.46926 * 329.97619 * 5 4 3 34 34 H 1.08997 * 109.46788 * 270.16924 * 7 6 4 35 35 H 1.08990 * 109.47102 * 30.17370 * 7 6 4 36 36 H 1.08994 * 109.46936 * 150.17408 * 7 6 4 37 37 H 1.08998 * 109.47309 * 214.83695 * 14 13 11 38 38 H 1.09007 * 109.46443 * 334.82974 * 14 13 11 39 39 H 0.97003 * 119.99331 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47700 * 210.00039 * 23 13 11 41 41 H 1.09000 * 109.47273 * 330.00642 * 23 13 11 42 42 H 1.09004 * 109.47166 * 300.00586 * 24 23 13 43 43 H 1.09000 * 109.46819 * 60.00100 * 24 23 13 44 44 H 1.08997 * 109.47659 * 54.99805 * 25 24 23 45 45 H 1.09005 * 109.46950 * 59.99879 * 26 25 24 46 46 H 1.09000 * 109.47032 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.46756 * 299.99976 * 26 25 24 48 48 H 1.09003 * 109.47129 * 60.00384 * 27 25 24 49 49 H 1.09000 * 109.47739 * 180.02562 * 27 25 24 50 50 H 1.09005 * 109.47365 * 300.00460 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0545 0.0000 4 7 3.6114 0.6463 0.0006 5 6 4.7762 1.5349 0.0013 6 6 3.6499 -0.6943 0.0070 7 6 4.8891 -1.5520 0.0158 8 6 2.3391 -1.1453 0.0006 9 6 1.8971 -2.5465 0.0008 10 8 2.7126 -3.4402 -0.1019 11 6 0.4454 -2.8713 0.1271 12 8 -0.0713 -2.9249 1.2240 13 7 -0.2927 -3.0995 -0.9772 14 6 0.3030 -2.9286 -2.3047 15 6 0.8106 -4.2573 -2.8023 16 1 0.7001 -5.1409 -2.1912 17 6 1.4151 -4.3454 -4.0384 18 7 1.5492 -3.2695 -4.7829 19 14 2.0437 -5.9926 -4.6556 20 1 0.9662 -6.6825 -5.4096 21 1 3.2106 -5.7744 -5.5477 22 1 2.4537 -6.8304 -3.5002 23 6 -1.6907 -3.5185 -0.8502 24 6 -2.5923 -2.2828 -0.8143 25 6 -4.0523 -2.7204 -0.6810 26 6 -4.9420 -1.4860 -0.5198 27 6 -4.4705 -3.4901 -1.9354 28 1 -0.3634 0.0608 1.0258 29 1 -0.3633 0.8581 -0.5657 30 1 -0.3634 -0.9188 -0.4603 31 1 5.0643 1.7555 1.0292 32 1 5.6053 1.0476 -0.5119 33 1 4.5255 2.4628 -0.5129 34 1 5.1936 -1.7610 -1.0097 35 1 5.6914 -1.0258 0.5330 36 1 4.6785 -2.4894 0.5305 37 1 -0.4495 -2.5457 -2.9941 38 1 1.1317 -2.2232 -2.2429 39 1 1.9748 -3.3314 -5.6524 40 1 -1.9622 -4.1416 -1.7024 41 1 -1.8173 -4.0875 0.0708 42 1 -2.3208 -1.6597 0.0379 43 1 -2.4657 -1.7138 -1.7353 44 1 -4.1608 -3.3631 0.1926 45 1 -4.8335 -0.8434 -1.3936 46 1 -5.9821 -1.7978 -0.4253 47 1 -4.6440 -0.9377 0.3738 48 1 -3.8368 -4.3695 -2.0503 49 1 -5.5108 -3.8015 -1.8407 50 1 -4.3621 -2.8474 -2.8092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103440555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:18 Heat of formation + Delta-G solvation = -11.713298 kcal Electronic energy + Delta-G solvation = -30866.438046 eV Core-core repulsion = 26895.309480 eV Total energy + Delta-G solvation = -3971.128566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.37106 -39.60924 -37.67063 -36.44924 -34.79316 -34.24826 -32.53246 -31.82865 -29.62859 -29.39876 -27.85429 -27.08942 -26.89156 -25.75802 -24.59245 -23.11847 -22.24393 -20.43558 -19.75611 -19.24145 -18.20729 -16.89521 -16.53532 -16.18995 -15.72328 -15.61806 -15.25264 -14.91026 -14.50029 -14.18625 -13.88272 -13.76939 -13.58614 -13.32842 -13.21990 -13.15407 -12.86670 -12.76819 -12.55373 -12.47581 -12.35648 -12.17197 -12.02023 -11.84130 -11.77299 -11.58683 -11.46789 -11.15082 -10.94713 -10.78953 -10.75746 -10.64265 -10.46410 -10.27942 -10.19567 -10.05352 -9.68574 -9.04775 -8.68320 -8.51899 -8.37027 -7.81142 -6.13691 -4.19567 1.49275 2.18493 2.40691 3.08890 3.27113 3.31898 3.33774 3.40975 3.71681 4.36305 4.43191 4.59989 4.78695 4.98256 4.99548 5.08527 5.12763 5.16674 5.18321 5.20903 5.25575 5.36158 5.55629 5.61177 5.66325 5.75389 5.85169 5.86626 5.89897 5.94216 5.99272 6.00137 6.02735 6.12223 6.14731 6.23317 6.27520 6.35204 6.41198 6.61476 6.65568 6.71707 6.72756 6.94139 7.13204 7.41458 7.71780 7.79571 7.96079 8.05957 8.16021 8.64763 8.88769 9.47357 10.93610 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007657 B = 0.005580 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3655.975775 B = 5016.566198 C = 7536.779848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.133 3.867 3 N -0.305 5.305 4 N -0.365 5.365 5 C 0.098 3.902 6 C 0.162 3.838 7 C -0.100 4.100 8 C -0.309 4.309 9 C 0.438 3.562 10 O -0.428 6.428 11 C 0.500 3.500 12 O -0.549 6.549 13 N -0.579 5.579 14 C 0.234 3.766 15 C -0.532 4.532 16 H 0.063 0.937 17 C 0.066 3.934 18 N -0.892 5.892 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.116 3.884 24 C -0.132 4.132 25 C -0.093 4.093 26 C -0.145 4.145 27 C -0.150 4.150 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 8.286 7.362 11.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.034 4.034 3 N -0.126 5.126 4 N -0.143 5.143 5 C -0.043 4.043 6 C 0.030 3.970 7 C -0.158 4.158 8 C -0.322 4.322 9 C 0.310 3.690 10 O -0.300 6.300 11 C 0.286 3.714 12 O -0.430 6.430 13 N -0.310 5.310 14 C 0.115 3.885 15 C -0.571 4.571 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.531 5.531 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.006 4.006 24 C -0.170 4.170 25 C -0.112 4.112 26 C -0.202 4.202 27 C -0.208 4.208 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.325 9.219 7.655 11.988 hybrid contribution 0.508 -1.543 -0.672 1.759 sum 0.183 7.676 6.983 10.378 Atomic orbital electron populations 1.20623 0.86056 1.04769 1.03602 1.22499 0.96944 0.89383 0.94608 1.77039 0.85707 1.22461 1.27394 1.48183 1.06114 1.04134 1.55899 1.21918 0.84326 0.94556 1.03474 1.21737 0.96778 0.84412 0.94088 1.20698 0.91237 0.99276 1.04591 1.20356 0.91912 0.95031 1.24889 1.21009 0.89243 0.87125 0.71575 1.90563 1.54780 1.49226 1.35398 1.20539 0.88063 0.77746 0.85078 1.90692 1.72004 1.53959 1.26322 1.48374 1.10942 1.63727 1.07916 1.19539 0.94119 0.97768 0.77078 1.21428 1.38907 0.94412 1.02323 0.91883 1.24903 0.95433 0.96873 0.96430 1.69934 1.43529 1.28039 1.11563 0.86509 0.78481 0.83858 0.78793 1.20531 1.21125 1.19594 1.21479 0.80025 0.96273 1.02859 1.22063 0.93735 0.98767 1.02454 1.21035 0.94608 0.96933 0.98584 1.21824 0.98966 0.97810 1.01617 1.21913 1.00577 1.00648 0.97628 0.89839 0.90364 0.88876 0.90525 0.89212 0.88874 0.88880 0.91080 0.87909 0.93943 0.94515 0.92655 0.89642 0.90949 0.91548 0.91484 0.91285 0.92750 0.93110 0.92839 0.92050 0.93284 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.60 36.00 0.35 -1.14 16 2 C 0.13 2.45 7.26 -81.95 -0.59 1.85 16 3 N -0.31 -5.28 12.48 33.94 0.42 -4.85 16 4 N -0.36 -5.44 3.97 -63.21 -0.25 -5.69 16 5 C 0.10 0.89 11.05 59.85 0.66 1.55 16 6 C 0.16 2.68 7.02 -81.45 -0.57 2.11 16 7 C -0.10 -1.32 9.29 36.01 0.33 -0.98 16 8 C -0.31 -6.07 5.93 -104.97 -0.62 -6.69 16 9 C 0.44 9.67 5.12 -31.46 -0.16 9.51 16 10 O -0.43 -10.11 15.70 5.44 0.09 -10.02 16 11 C 0.50 10.98 4.69 -11.66 -0.05 10.93 16 12 O -0.55 -12.40 16.72 5.48 0.09 -12.31 16 13 N -0.58 -12.26 1.54 -175.62 -0.27 -12.53 16 14 C 0.23 5.67 4.92 -5.20 -0.03 5.65 16 15 C -0.53 -14.32 9.38 -34.44 -0.32 -14.64 16 16 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 17 C 0.07 1.81 5.46 -17.81 -0.10 1.71 16 18 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 19 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.12 2.08 5.14 -4.04 -0.02 2.06 16 24 C -0.13 -1.96 4.26 -26.73 -0.11 -2.08 16 25 C -0.09 -1.15 2.92 -90.62 -0.26 -1.41 16 26 C -0.14 -1.57 9.19 37.16 0.34 -1.22 16 27 C -0.15 -1.82 8.95 37.16 0.33 -1.49 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.64 3.27 -51.93 -0.17 1.47 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.61 7.63 -51.93 -0.40 0.22 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 0.65 7.71 -51.93 -0.40 0.25 16 36 H 0.10 1.51 6.66 -51.93 -0.35 1.16 16 37 H 0.04 1.05 8.11 -51.93 -0.42 0.63 16 38 H 0.04 0.96 6.64 -51.92 -0.35 0.62 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.09 1.53 6.50 -51.93 -0.34 1.19 16 41 H 0.07 1.30 7.50 -51.93 -0.39 0.92 16 42 H 0.07 1.01 7.46 -51.93 -0.39 0.63 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -32.97 406.62 -7.06 -40.04 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.15 Total: 1.60 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.83 Total: 5.71 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.64 Total: -47.42 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.18 Total: -22.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.97 -7.06 -40.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.322 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds