Wall clock time and date at job start Tue Mar 31 2020 20:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30350 * 126.00725 * 2 1 4 4 N 1.39903 * 109.04365 * 179.97438 * 3 2 1 5 5 C 1.46505 * 125.69395 * 180.02562 * 4 3 2 6 6 C 1.34117 * 108.60759 * 359.72770 * 4 3 2 7 7 C 1.50708 * 126.33062 * 180.28276 * 6 4 3 8 8 C 1.38621 * 107.33959 * 0.43113 * 6 4 3 9 9 C 1.46925 * 126.49184 * 179.83744 * 8 6 4 10 10 O 1.21417 * 119.99603 * 354.05458 * 9 8 6 11 11 C 1.49301 * 120.00013 * 174.06013 * 9 8 6 12 12 O 1.21370 * 120.00060 * 276.10063 * 11 9 8 13 13 N 1.34774 * 120.00236 * 95.82106 * 11 9 8 14 14 C 1.46503 * 120.00172 * 355.31958 * 13 11 9 15 15 C 1.50690 * 109.47390 * 94.82584 * 14 13 11 16 16 H 1.08003 * 120.00497 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00289 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99340 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00255 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46658 * 90.00603 * 19 17 15 21 21 H 1.48499 * 109.46884 * 210.00369 * 19 17 15 22 22 H 1.48490 * 109.47349 * 330.00684 * 19 17 15 23 23 C 1.46498 * 120.00269 * 175.31009 * 13 11 9 24 24 C 1.53005 * 109.46960 * 90.00264 * 23 13 11 25 25 C 1.52995 * 109.47151 * 180.02562 * 24 23 13 26 26 C 1.53007 * 109.47112 * 175.00201 * 25 24 23 27 27 C 1.53000 * 109.47251 * 294.99809 * 25 24 23 28 28 H 1.08998 * 109.47459 * 273.39179 * 1 2 3 29 29 H 1.09006 * 109.46669 * 33.39337 * 1 2 3 30 30 H 1.09005 * 109.47312 * 153.38909 * 1 2 3 31 31 H 1.09004 * 109.47258 * 89.97692 * 5 4 3 32 32 H 1.09004 * 109.46859 * 209.97878 * 5 4 3 33 33 H 1.09001 * 109.46926 * 329.97619 * 5 4 3 34 34 H 1.08997 * 109.46788 * 270.16924 * 7 6 4 35 35 H 1.08990 * 109.47102 * 30.17370 * 7 6 4 36 36 H 1.08994 * 109.46936 * 150.17408 * 7 6 4 37 37 H 1.08998 * 109.47309 * 214.83695 * 14 13 11 38 38 H 1.09007 * 109.46443 * 334.82974 * 14 13 11 39 39 H 0.97003 * 119.99331 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47700 * 210.00039 * 23 13 11 41 41 H 1.09000 * 109.47273 * 330.00642 * 23 13 11 42 42 H 1.09004 * 109.47166 * 300.00586 * 24 23 13 43 43 H 1.09000 * 109.46819 * 60.00100 * 24 23 13 44 44 H 1.08997 * 109.47659 * 54.99805 * 25 24 23 45 45 H 1.09005 * 109.46950 * 59.99879 * 26 25 24 46 46 H 1.09000 * 109.47032 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.46756 * 299.99976 * 26 25 24 48 48 H 1.09003 * 109.47129 * 60.00384 * 27 25 24 49 49 H 1.09000 * 109.47739 * 180.02562 * 27 25 24 50 50 H 1.09005 * 109.47365 * 300.00460 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0545 0.0000 4 7 3.6114 0.6463 0.0006 5 6 4.7762 1.5349 0.0013 6 6 3.6499 -0.6943 0.0070 7 6 4.8891 -1.5520 0.0158 8 6 2.3391 -1.1453 0.0006 9 6 1.8971 -2.5465 0.0008 10 8 2.7126 -3.4402 -0.1019 11 6 0.4454 -2.8713 0.1271 12 8 -0.0713 -2.9249 1.2240 13 7 -0.2927 -3.0995 -0.9772 14 6 0.3030 -2.9286 -2.3047 15 6 0.8106 -4.2573 -2.8023 16 1 0.7001 -5.1409 -2.1912 17 6 1.4151 -4.3454 -4.0384 18 7 1.5492 -3.2695 -4.7829 19 14 2.0437 -5.9926 -4.6556 20 1 0.9662 -6.6825 -5.4096 21 1 3.2106 -5.7744 -5.5477 22 1 2.4537 -6.8304 -3.5002 23 6 -1.6907 -3.5185 -0.8502 24 6 -2.5923 -2.2828 -0.8143 25 6 -4.0523 -2.7204 -0.6810 26 6 -4.9420 -1.4860 -0.5198 27 6 -4.4705 -3.4901 -1.9354 28 1 -0.3634 0.0608 1.0258 29 1 -0.3633 0.8581 -0.5657 30 1 -0.3634 -0.9188 -0.4603 31 1 5.0643 1.7555 1.0292 32 1 5.6053 1.0476 -0.5119 33 1 4.5255 2.4628 -0.5129 34 1 5.1936 -1.7610 -1.0097 35 1 5.6914 -1.0258 0.5330 36 1 4.6785 -2.4894 0.5305 37 1 -0.4495 -2.5457 -2.9941 38 1 1.1317 -2.2232 -2.2429 39 1 1.9748 -3.3314 -5.6524 40 1 -1.9622 -4.1416 -1.7024 41 1 -1.8173 -4.0875 0.0708 42 1 -2.3208 -1.6597 0.0379 43 1 -2.4657 -1.7138 -1.7353 44 1 -4.1608 -3.3631 0.1926 45 1 -4.8335 -0.8434 -1.3936 46 1 -5.9821 -1.7978 -0.4253 47 1 -4.6440 -0.9377 0.3738 48 1 -3.8368 -4.3695 -2.0503 49 1 -5.5108 -3.8015 -1.8407 50 1 -4.3621 -2.8474 -2.8092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103440555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:17 Heat of formation + Delta-G solvation = -30.357888 kcal Electronic energy + Delta-G solvation = -30867.246536 eV Core-core repulsion = 26895.309480 eV Total energy + Delta-G solvation = -3971.937056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.70535 -41.25323 -39.30505 -37.81335 -36.42877 -35.44090 -34.53269 -33.04853 -30.97236 -30.63593 -29.35777 -28.73462 -27.92724 -26.91296 -25.95687 -25.05460 -23.65857 -21.87587 -20.84360 -20.50135 -19.80313 -18.65024 -18.40010 -17.78342 -17.18279 -16.91545 -16.71897 -16.40911 -16.08399 -15.55612 -15.34658 -14.96891 -14.88866 -14.57958 -14.47883 -14.36620 -14.28829 -14.23812 -13.99577 -13.71168 -13.49107 -13.45532 -13.38811 -13.12633 -12.97132 -12.93051 -12.89778 -12.68398 -12.64132 -12.49493 -12.20358 -12.04373 -11.87682 -11.72142 -11.58866 -11.46730 -11.34451 -10.64988 -10.33687 -10.26174 -9.75134 -9.57242 -8.22988 -6.36322 0.04217 0.79456 1.27180 1.37709 1.39045 1.42041 1.51476 1.78219 2.10808 2.39500 3.01700 3.08165 3.39584 3.48971 3.80539 3.95474 3.99531 4.02467 4.12643 4.24960 4.29489 4.36075 4.37651 4.54574 4.60161 4.60975 4.62445 4.68362 4.72187 4.75274 4.80980 4.87935 4.88982 4.91159 4.98357 5.02951 5.08220 5.12246 5.18150 5.21038 5.36134 5.40525 5.53889 5.58027 5.58425 5.71609 5.82014 5.99079 6.24373 6.33784 6.47456 6.70808 6.96480 7.34358 8.83263 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007657 B = 0.005580 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3655.975775 B = 5016.566198 C = 7536.779848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.122 3.878 3 N -0.315 5.315 4 N -0.353 5.353 5 C 0.082 3.918 6 C 0.170 3.830 7 C -0.097 4.097 8 C -0.354 4.354 9 C 0.431 3.569 10 O -0.460 6.460 11 C 0.499 3.501 12 O -0.561 6.561 13 N -0.577 5.577 14 C 0.256 3.744 15 C -0.546 4.546 16 H 0.049 0.951 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.954 3.046 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.277 1.277 23 C 0.113 3.887 24 C -0.120 4.120 25 C -0.089 4.089 26 C -0.141 4.141 27 C -0.149 4.149 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.035 0.965 38 H 0.016 0.984 39 H 0.268 0.732 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.068 0.932 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 9.253 7.391 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 N -0.137 5.137 4 N -0.131 5.131 5 C -0.056 4.056 6 C 0.035 3.965 7 C -0.155 4.155 8 C -0.367 4.367 9 C 0.307 3.693 10 O -0.335 6.335 11 C 0.284 3.716 12 O -0.443 6.443 13 N -0.307 5.307 14 C 0.136 3.864 15 C -0.584 4.584 16 H 0.067 0.933 17 C -0.176 4.176 18 N -0.556 5.556 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.009 4.009 24 C -0.159 4.159 25 C -0.108 4.108 26 C -0.198 4.198 27 C -0.206 4.206 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.171 10.225 7.687 12.793 hybrid contribution 0.421 -1.752 -0.648 1.915 sum 0.592 8.473 7.039 11.031 Atomic orbital electron populations 1.20626 0.85364 1.04615 1.04259 1.22734 0.97796 0.89251 0.94782 1.76969 0.86956 1.22207 1.27534 1.48667 1.06588 1.04272 1.53603 1.22498 0.82931 0.94334 1.05859 1.22161 0.96806 0.85438 0.92138 1.20797 0.91140 0.98530 1.05051 1.20415 0.93989 0.94024 1.28246 1.21278 0.88964 0.88284 0.70803 1.90526 1.55187 1.50175 1.37599 1.20677 0.88429 0.77464 0.84983 1.90661 1.72427 1.54672 1.26497 1.48313 1.12113 1.63569 1.06712 1.19083 0.93134 0.96105 0.78127 1.21593 1.39413 0.94865 1.02543 0.93271 1.25601 0.95465 1.00003 0.96540 1.70015 1.44019 1.29645 1.11926 0.85619 0.78412 0.80010 0.78096 1.19180 1.20292 1.20238 1.21682 0.78872 0.97790 1.02539 1.21963 0.94874 0.97052 1.01987 1.21026 0.92972 0.97926 0.98892 1.21789 0.99416 0.96853 1.01773 1.21900 1.01520 0.99977 0.97240 0.88960 0.88600 0.90552 0.87857 0.86408 0.87836 0.88690 0.86306 0.89740 0.94670 0.96613 0.92318 0.89891 0.91168 0.91882 0.92026 0.90988 0.92688 0.91449 0.92612 0.93300 0.91328 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.96 9.60 71.23 0.68 -2.28 16 2 C 0.12 4.51 7.26 43.60 0.32 4.83 16 3 N -0.32 -10.63 12.48 -46.55 -0.58 -11.21 16 4 N -0.35 -9.88 3.97 -353.89 -1.41 -11.28 16 5 C 0.08 1.19 11.05 127.77 1.41 2.61 16 6 C 0.17 5.48 7.02 42.30 0.30 5.78 16 7 C -0.10 -2.43 9.29 71.24 0.66 -1.76 16 8 C -0.35 -14.18 5.93 -20.09 -0.12 -14.30 16 9 C 0.43 19.83 5.12 27.53 0.14 19.97 16 10 O -0.46 -22.73 15.70 -3.45 -0.05 -22.78 16 11 C 0.50 22.77 4.69 87.22 0.41 23.18 16 12 O -0.56 -26.14 16.72 -3.31 -0.06 -26.19 16 13 N -0.58 -25.42 1.54 -827.91 -1.27 -26.69 16 14 C 0.26 12.89 4.92 85.63 0.42 13.31 16 15 C -0.55 -30.17 9.38 25.60 0.24 -29.93 16 16 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 17 C 0.02 1.34 5.46 84.66 0.46 1.80 16 18 N -0.92 -52.01 13.29 21.45 0.28 -51.73 16 19 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 C 0.11 4.16 5.14 86.38 0.44 4.61 16 24 C -0.12 -3.63 4.26 30.59 0.13 -3.50 16 25 C -0.09 -2.14 2.92 -10.79 -0.03 -2.17 16 26 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 27 C -0.15 -3.49 8.95 71.98 0.64 -2.84 16 28 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.08 2.78 3.27 -2.38 -0.01 2.77 16 31 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.12 1.10 7.63 -2.38 -0.02 1.08 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.12 1.76 7.71 -2.39 -0.02 1.74 16 36 H 0.08 2.48 6.66 -2.39 -0.02 2.47 16 37 H 0.04 1.81 8.11 -2.39 -0.02 1.79 16 38 H 0.02 0.87 6.64 -2.38 -0.02 0.85 16 39 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.08 3.08 6.50 -2.39 -0.02 3.06 16 41 H 0.07 2.61 7.50 -2.39 -0.02 2.59 16 42 H 0.06 1.94 7.46 -2.38 -0.02 1.92 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 47 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.05 1.25 6.57 -2.39 -0.02 1.23 16 49 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -72.99 406.62 6.65 -66.34 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.93 Total: 20.53 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.78 Total: 17.15 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -2.98 Total: -100.91 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.11 Total: -48.97 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -72.99 6.65 -66.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.986 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds