Wall clock time and date at job start Tue Mar 31 2020 20:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30846 * 125.90257 * 2 1 4 4 N 1.40085 * 108.20605 * 180.26477 * 3 2 1 5 5 C 1.46498 * 126.03419 * 179.69879 * 4 3 2 6 6 C 1.34944 * 107.92452 * 359.71164 * 4 3 2 7 7 C 1.50697 * 126.12527 * 179.97438 * 6 4 3 8 8 C 1.35310 * 107.74841 * 0.02562 * 6 4 3 9 9 C 1.50704 * 126.04150 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47040 * 89.99859 * 9 8 6 11 11 C 1.50704 * 109.47040 * 179.97438 * 10 9 8 12 12 O 1.20825 * 119.99990 * 0.02562 * 11 10 9 13 13 O 1.34234 * 119.99884 * 180.02562 * 11 10 9 14 14 C 1.45207 * 116.99895 * 180.02562 * 13 11 10 15 15 C 1.53040 * 109.45508 * 270.02744 * 14 13 11 16 16 C 1.53191 * 109.30903 * 178.60142 * 15 14 13 17 17 N 1.46933 * 108.76703 * 54.65389 * 16 15 14 18 18 C 1.36933 * 120.63179 * 126.40516 * 17 16 15 19 19 H 1.08002 * 119.99997 * 331.82992 * 18 17 16 20 20 C 1.38812 * 120.00158 * 151.83305 * 18 17 16 21 21 N 1.31618 * 119.99551 * 343.06447 * 20 18 17 22 22 Si 1.86800 * 120.00207 * 163.07081 * 20 18 17 23 23 H 1.48505 * 109.46891 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47215 * 119.99441 * 22 20 18 25 25 H 1.48500 * 109.46923 * 239.99786 * 22 20 18 26 26 C 1.46924 * 118.73570 * 306.38411 * 17 16 15 27 27 C 1.53036 * 109.45800 * 149.97419 * 14 13 11 28 28 H 1.08998 * 109.46764 * 270.21446 * 1 2 3 29 29 H 1.09005 * 109.47027 * 30.21364 * 1 2 3 30 30 H 1.08993 * 109.47207 * 150.21286 * 1 2 3 31 31 H 1.08995 * 109.47420 * 270.01652 * 5 4 3 32 32 H 1.08999 * 109.47132 * 30.01970 * 5 4 3 33 33 H 1.09003 * 109.47257 * 150.01890 * 5 4 3 34 34 H 1.08995 * 109.47681 * 270.02873 * 7 6 4 35 35 H 1.09004 * 109.47554 * 30.03205 * 7 6 4 36 36 H 1.09002 * 109.47345 * 150.02435 * 7 6 4 37 37 H 1.09000 * 109.47407 * 210.00316 * 9 8 6 38 38 H 1.09003 * 109.47222 * 329.99936 * 9 8 6 39 39 H 1.08998 * 109.47245 * 299.99940 * 10 9 8 40 40 H 1.08996 * 109.47530 * 60.00412 * 10 9 8 41 41 H 1.08997 * 109.45423 * 29.99744 * 14 13 11 42 42 H 1.09002 * 109.49570 * 298.56278 * 15 14 13 43 43 H 1.08998 * 109.49807 * 58.66365 * 15 14 13 44 44 H 1.09000 * 109.59836 * 294.86617 * 16 15 14 45 45 H 1.09004 * 109.70430 * 174.50476 * 16 15 14 46 46 H 0.96998 * 119.99955 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.58763 * 293.81932 * 26 17 16 48 48 H 1.09004 * 109.70263 * 173.46187 * 26 17 16 49 49 H 1.09009 * 109.49760 * 301.32994 * 27 14 13 50 50 H 1.08991 * 109.50188 * 61.43060 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0599 0.0000 4 7 3.6088 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0144 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5989 -0.0085 8 6 2.3272 -1.1330 0.0037 9 6 1.8599 -2.5657 0.0084 10 6 1.7089 -3.0482 1.4524 11 6 1.2410 -4.4807 1.4571 12 8 1.0485 -5.0568 0.4127 13 8 1.0381 -5.1167 2.6217 14 6 0.5881 -6.4954 2.5503 15 6 -0.9417 -6.5318 2.5298 16 6 -1.4124 -7.9854 2.4192 17 7 -0.8049 -8.7631 3.5078 18 6 -1.5840 -9.5094 4.3511 19 1 -2.6051 -9.2156 4.5446 20 6 -1.0614 -10.6435 4.9574 21 7 0.0382 -11.1934 4.4875 22 14 -1.9187 -11.3892 6.4401 23 1 -3.1252 -10.5882 6.7689 24 1 -2.3199 -12.7849 6.1298 25 1 -0.9921 -11.3868 7.6006 26 6 0.6544 -8.7252 3.6740 27 6 1.1019 -7.2632 3.7703 28 1 -0.3633 0.0038 1.0277 29 1 -0.3633 0.8881 -0.5172 30 1 -0.3633 -0.8918 -0.5105 31 1 5.0772 1.7136 -1.0441 32 1 4.5592 2.4342 0.4988 33 1 5.6122 0.9992 0.4959 34 1 5.1238 -1.8138 -1.0373 35 1 5.6539 -1.0902 0.5001 36 1 4.6103 -2.5321 0.5082 37 1 0.8986 -2.6361 -0.5006 38 1 2.5908 -3.1880 -0.5080 39 1 2.6702 -2.9779 1.9614 40 1 0.9781 -2.4260 1.9689 41 1 0.9745 -6.9567 1.6415 42 1 -1.3284 -6.0930 3.4497 43 1 -1.3077 -5.9649 1.6738 44 1 -1.1030 -8.3978 1.4588 45 1 -2.4984 -8.0274 2.5021 46 1 0.4032 -11.9861 4.9109 47 1 1.1323 -9.1979 2.8159 48 1 0.9344 -9.2538 4.5853 49 1 2.1906 -7.2171 3.7972 50 1 0.6958 -6.8175 4.6782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119347346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:52 Heat of formation + Delta-G solvation = -8.797024 kcal Electronic energy + Delta-G solvation = -28836.874473 eV Core-core repulsion = 24865.872366 eV Total energy + Delta-G solvation = -3971.002107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.68959 -40.27647 -37.55007 -35.85453 -34.93048 -33.94205 -32.68958 -31.31810 -30.33887 -29.81077 -29.60294 -27.64512 -26.06526 -25.18329 -23.93963 -22.31014 -21.98555 -20.35867 -19.84581 -19.63739 -19.28124 -17.48873 -16.96660 -16.60832 -16.21688 -16.06893 -15.70649 -14.84284 -14.56147 -14.23277 -14.01280 -13.86871 -13.64273 -13.55488 -13.48379 -13.29155 -13.12390 -12.92581 -12.81201 -12.70821 -12.57925 -12.34781 -12.28234 -12.13104 -11.91748 -11.51203 -11.25834 -11.20207 -11.03450 -10.76080 -10.69445 -10.63772 -10.42586 -10.20221 -10.14664 -9.87986 -9.63675 -9.42067 -9.32176 -8.52252 -8.49872 -6.72548 -5.81887 -3.24388 1.55217 2.18559 2.41020 2.44547 3.04283 3.36794 3.44627 3.47107 4.14316 4.28836 4.48017 4.62593 4.68631 4.75082 4.80104 4.85830 4.97952 5.00321 5.09131 5.12775 5.27661 5.30397 5.37887 5.40120 5.41123 5.44114 5.46837 5.50133 5.55583 5.68191 5.76833 5.86587 5.97842 6.02764 6.05262 6.24615 6.41547 6.43857 6.46442 6.52356 6.60006 6.73849 6.73916 6.89972 7.00271 7.29099 7.48094 7.58510 7.78204 8.04840 8.41878 9.17847 9.80641 10.37426 11.27372 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.001949 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.161470 B =14361.922684 C =14766.055726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.084 3.916 3 N -0.300 5.300 4 N -0.376 5.376 5 C 0.102 3.898 6 C 0.090 3.910 7 C -0.095 4.095 8 C -0.235 4.235 9 C -0.026 4.026 10 C -0.108 4.108 11 C 0.456 3.544 12 O -0.512 6.512 13 O -0.359 6.359 14 C 0.098 3.902 15 C -0.145 4.145 16 C 0.149 3.851 17 N -0.593 5.593 18 C -0.252 4.252 19 H 0.068 0.932 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.288 1.288 26 C 0.174 3.826 27 C -0.135 4.135 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.060 0.940 46 H 0.254 0.746 47 H 0.022 0.978 48 H 0.096 0.904 49 H 0.057 0.943 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.060 23.946 -8.754 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 N -0.123 5.123 4 N -0.158 5.158 5 C -0.039 4.039 6 C -0.037 4.037 7 C -0.153 4.153 8 C -0.246 4.246 9 C -0.064 4.064 10 C -0.146 4.146 11 C 0.299 3.701 12 O -0.401 6.401 13 O -0.276 6.276 14 C 0.044 3.956 15 C -0.185 4.185 16 C 0.022 3.978 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.085 0.915 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.048 3.952 27 C -0.175 4.175 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.040 0.960 48 H 0.114 0.886 49 H 0.075 0.925 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.235 24.956 -8.980 28.429 hybrid contribution -0.232 -1.205 0.686 1.406 sum 10.003 23.750 -8.294 27.073 Atomic orbital electron populations 1.20226 0.86613 1.03452 1.03210 1.22242 0.96887 0.90214 0.98874 1.77327 0.86137 1.22525 1.26286 1.48279 1.05568 1.04139 1.57855 1.21813 0.83946 0.94917 1.03255 1.20882 0.96975 0.84514 1.01366 1.20506 0.92802 0.98472 1.03563 1.19608 0.91134 0.95949 1.17939 1.19629 1.02743 0.89844 0.94226 1.21393 1.03857 0.89475 0.99916 1.23682 0.74258 0.89844 0.82345 1.90646 1.48091 1.68047 1.33299 1.86563 1.77235 1.29766 1.34019 1.22919 0.95166 0.76673 1.00820 1.22450 0.93992 1.00599 1.01449 1.20865 0.97104 0.88389 0.91448 1.44124 1.02422 1.53369 1.31631 1.19238 0.96486 1.03107 1.19357 0.91477 1.25074 0.98285 0.95865 1.00480 1.70028 1.23206 1.21407 1.40138 0.86204 0.78963 0.78738 0.82752 1.20209 1.21706 1.21517 1.20807 0.83617 0.88810 1.02001 1.22451 0.99536 0.99349 0.96143 0.90314 0.90947 0.90123 0.90859 0.89333 0.89554 0.89994 0.91088 0.89332 0.90144 0.90509 0.88276 0.87981 0.90383 0.91417 0.92657 0.96062 0.92114 0.93592 0.96024 0.88596 0.92470 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.26 36.00 0.37 -0.26 16 2 C 0.08 0.90 7.22 -82.40 -0.59 0.31 16 3 N -0.30 -3.53 12.58 33.67 0.42 -3.11 16 4 N -0.38 -3.56 4.01 -63.89 -0.26 -3.82 16 5 C 0.10 0.52 11.27 59.85 0.67 1.20 16 6 C 0.09 0.81 6.93 -82.27 -0.57 0.24 16 7 C -0.10 -0.55 9.72 36.00 0.35 -0.20 16 8 C -0.24 -2.38 5.35 -105.05 -0.56 -2.94 16 9 C -0.03 -0.26 4.41 -27.88 -0.12 -0.38 16 10 C -0.11 -1.12 5.79 -27.88 -0.16 -1.28 16 11 C 0.46 6.65 7.93 36.01 0.29 6.94 16 12 O -0.51 -8.82 15.20 -18.75 -0.28 -9.10 16 13 O -0.36 -5.93 9.88 -39.27 -0.39 -6.31 16 14 C 0.10 1.82 2.42 -26.69 -0.06 1.76 16 15 C -0.15 -2.73 5.72 -26.61 -0.15 -2.88 16 16 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 17 N -0.59 -14.94 2.99 -172.31 -0.52 -15.45 16 18 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 19 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 20 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 21 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 22 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 27 C -0.14 -2.66 5.74 -26.61 -0.15 -2.81 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.60 7.25 -51.93 -0.38 0.22 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.24 7.05 -51.93 -0.37 -0.12 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.29 7.08 -51.93 -0.37 -0.08 16 36 H 0.09 0.51 7.78 -51.93 -0.40 0.11 16 37 H 0.08 0.84 7.20 -51.93 -0.37 0.46 16 38 H 0.08 0.77 7.73 -51.93 -0.40 0.37 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.54 7.16 -51.93 -0.37 1.17 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.10 2.52 6.07 -51.93 -0.31 2.21 16 49 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 50 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 403.13 15.07 6.08 6.08 Total: -1.00 -33.61 403.13 -8.76 -42.38 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.43 Total: -1.66 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.98 Total: -0.11 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.27 Total: -47.79 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.67 Total: -15.42 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.61 -8.76 -42.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119347346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.580 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds