Wall clock time and date at job start Tue Mar 31 2020 20:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30846 * 125.90257 * 2 1 4 4 N 1.40085 * 108.20605 * 180.26477 * 3 2 1 5 5 C 1.46498 * 126.03419 * 179.69879 * 4 3 2 6 6 C 1.34944 * 107.92452 * 359.71164 * 4 3 2 7 7 C 1.50697 * 126.12527 * 179.97438 * 6 4 3 8 8 C 1.35310 * 107.74841 * 0.02562 * 6 4 3 9 9 C 1.50704 * 126.04150 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47040 * 89.99859 * 9 8 6 11 11 C 1.50704 * 109.47040 * 179.97438 * 10 9 8 12 12 O 1.20825 * 119.99990 * 0.02562 * 11 10 9 13 13 O 1.34234 * 119.99884 * 180.02562 * 11 10 9 14 14 C 1.45207 * 116.99895 * 180.02562 * 13 11 10 15 15 C 1.53040 * 109.45508 * 270.02744 * 14 13 11 16 16 C 1.53191 * 109.30903 * 178.60142 * 15 14 13 17 17 N 1.46933 * 108.76703 * 54.65389 * 16 15 14 18 18 C 1.36933 * 120.63179 * 126.40516 * 17 16 15 19 19 H 1.08002 * 119.99997 * 331.82992 * 18 17 16 20 20 C 1.38812 * 120.00158 * 151.83305 * 18 17 16 21 21 N 1.31618 * 119.99551 * 343.06447 * 20 18 17 22 22 Si 1.86800 * 120.00207 * 163.07081 * 20 18 17 23 23 H 1.48505 * 109.46891 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47215 * 119.99441 * 22 20 18 25 25 H 1.48500 * 109.46923 * 239.99786 * 22 20 18 26 26 C 1.46924 * 118.73570 * 306.38411 * 17 16 15 27 27 C 1.53036 * 109.45800 * 149.97419 * 14 13 11 28 28 H 1.08998 * 109.46764 * 270.21446 * 1 2 3 29 29 H 1.09005 * 109.47027 * 30.21364 * 1 2 3 30 30 H 1.08993 * 109.47207 * 150.21286 * 1 2 3 31 31 H 1.08995 * 109.47420 * 270.01652 * 5 4 3 32 32 H 1.08999 * 109.47132 * 30.01970 * 5 4 3 33 33 H 1.09003 * 109.47257 * 150.01890 * 5 4 3 34 34 H 1.08995 * 109.47681 * 270.02873 * 7 6 4 35 35 H 1.09004 * 109.47554 * 30.03205 * 7 6 4 36 36 H 1.09002 * 109.47345 * 150.02435 * 7 6 4 37 37 H 1.09000 * 109.47407 * 210.00316 * 9 8 6 38 38 H 1.09003 * 109.47222 * 329.99936 * 9 8 6 39 39 H 1.08998 * 109.47245 * 299.99940 * 10 9 8 40 40 H 1.08996 * 109.47530 * 60.00412 * 10 9 8 41 41 H 1.08997 * 109.45423 * 29.99744 * 14 13 11 42 42 H 1.09002 * 109.49570 * 298.56278 * 15 14 13 43 43 H 1.08998 * 109.49807 * 58.66365 * 15 14 13 44 44 H 1.09000 * 109.59836 * 294.86617 * 16 15 14 45 45 H 1.09004 * 109.70430 * 174.50476 * 16 15 14 46 46 H 0.96998 * 119.99955 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.58763 * 293.81932 * 26 17 16 48 48 H 1.09004 * 109.70263 * 173.46187 * 26 17 16 49 49 H 1.09009 * 109.49760 * 301.32994 * 27 14 13 50 50 H 1.08991 * 109.50188 * 61.43060 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0599 0.0000 4 7 3.6088 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0144 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5989 -0.0085 8 6 2.3272 -1.1330 0.0037 9 6 1.8599 -2.5657 0.0084 10 6 1.7089 -3.0482 1.4524 11 6 1.2410 -4.4807 1.4571 12 8 1.0485 -5.0568 0.4127 13 8 1.0381 -5.1167 2.6217 14 6 0.5881 -6.4954 2.5503 15 6 -0.9417 -6.5318 2.5298 16 6 -1.4124 -7.9854 2.4192 17 7 -0.8049 -8.7631 3.5078 18 6 -1.5840 -9.5094 4.3511 19 1 -2.6051 -9.2156 4.5446 20 6 -1.0614 -10.6435 4.9574 21 7 0.0382 -11.1934 4.4875 22 14 -1.9187 -11.3892 6.4401 23 1 -3.1252 -10.5882 6.7689 24 1 -2.3199 -12.7849 6.1298 25 1 -0.9921 -11.3868 7.6006 26 6 0.6544 -8.7252 3.6740 27 6 1.1019 -7.2632 3.7703 28 1 -0.3633 0.0038 1.0277 29 1 -0.3633 0.8881 -0.5172 30 1 -0.3633 -0.8918 -0.5105 31 1 5.0772 1.7136 -1.0441 32 1 4.5592 2.4342 0.4988 33 1 5.6122 0.9992 0.4959 34 1 5.1238 -1.8138 -1.0373 35 1 5.6539 -1.0902 0.5001 36 1 4.6103 -2.5321 0.5082 37 1 0.8986 -2.6361 -0.5006 38 1 2.5908 -3.1880 -0.5080 39 1 2.6702 -2.9779 1.9614 40 1 0.9781 -2.4260 1.9689 41 1 0.9745 -6.9567 1.6415 42 1 -1.3284 -6.0930 3.4497 43 1 -1.3077 -5.9649 1.6738 44 1 -1.1030 -8.3978 1.4588 45 1 -2.4984 -8.0274 2.5021 46 1 0.4032 -11.9861 4.9109 47 1 1.1323 -9.1979 2.8159 48 1 0.9344 -9.2538 4.5853 49 1 2.1906 -7.2171 3.7972 50 1 0.6958 -6.8175 4.6782 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119347346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:51 Heat of formation + Delta-G solvation = -26.927854 kcal Electronic energy + Delta-G solvation = -28837.660685 eV Core-core repulsion = 24865.872366 eV Total energy + Delta-G solvation = -3971.788319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.37350 -41.55343 -39.14007 -37.32303 -35.67135 -34.68404 -34.51912 -32.26404 -31.86700 -31.38966 -30.37264 -28.39716 -27.15565 -26.51148 -24.93774 -23.96673 -23.58951 -21.55340 -21.00657 -20.52090 -20.31345 -18.86216 -18.66885 -17.43919 -17.33442 -17.06364 -16.78459 -16.55041 -15.69438 -15.45560 -15.37354 -14.93355 -14.81106 -14.61552 -14.50708 -14.30454 -14.17791 -13.98448 -13.93578 -13.60612 -13.36258 -13.27102 -13.17808 -13.06675 -12.89528 -12.72075 -12.64421 -12.60243 -12.59151 -12.42156 -12.12756 -12.02406 -11.93768 -11.83925 -11.51202 -11.39513 -11.27830 -11.02197 -10.56452 -9.99250 -9.21919 -8.74954 -7.89942 -5.35812 0.88674 1.28072 1.47667 1.49969 1.56338 1.60756 1.67031 1.91345 2.51131 3.26535 3.53449 3.59793 3.73144 3.74677 3.83233 3.88862 4.07281 4.12608 4.19183 4.20710 4.32278 4.38271 4.39514 4.48615 4.51261 4.58341 4.63096 4.70828 4.74451 4.75655 4.77052 4.81244 4.88164 4.92672 5.00102 5.03687 5.06278 5.09396 5.19210 5.24017 5.25841 5.33957 5.41619 5.57125 5.64328 5.72410 5.78201 6.16996 6.37043 6.78396 6.82750 7.11823 7.80303 8.33399 9.17915 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.001949 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.161470 B =14361.922684 C =14766.055726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.071 3.929 3 N -0.338 5.338 4 N -0.380 5.380 5 C 0.092 3.908 6 C 0.092 3.908 7 C -0.095 4.095 8 C -0.255 4.255 9 C -0.016 4.016 10 C -0.097 4.097 11 C 0.456 3.544 12 O -0.539 6.539 13 O -0.357 6.357 14 C 0.105 3.895 15 C -0.132 4.132 16 C 0.146 3.854 17 N -0.610 5.610 18 C -0.264 4.264 19 H 0.069 0.931 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.293 1.293 25 H -0.288 1.288 26 C 0.180 3.820 27 C -0.122 4.122 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.014 0.986 45 H 0.065 0.935 46 H 0.252 0.748 47 H 0.001 0.999 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.749 25.624 -8.307 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 N -0.162 5.162 4 N -0.162 5.162 5 C -0.048 4.048 6 C -0.036 4.036 7 C -0.153 4.153 8 C -0.266 4.266 9 C -0.055 4.055 10 C -0.134 4.134 11 C 0.301 3.699 12 O -0.429 6.429 13 O -0.274 6.274 14 C 0.051 3.949 15 C -0.172 4.172 16 C 0.020 3.980 17 N -0.334 5.334 18 C -0.394 4.394 19 H 0.087 0.913 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.191 1.191 24 H -0.220 1.220 25 H -0.215 1.215 26 C 0.054 3.946 27 C -0.161 4.161 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.032 0.968 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.019 0.981 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.921 26.684 -8.546 30.072 hybrid contribution -0.388 -1.658 0.446 1.761 sum 10.533 25.025 -8.101 28.334 Atomic orbital electron populations 1.20288 0.85561 1.03794 1.03824 1.22620 0.97877 0.90344 0.98611 1.77258 0.87525 1.23542 1.27829 1.48631 1.05703 1.04828 1.57079 1.22150 0.83292 0.94897 1.04451 1.21379 0.97750 0.84780 0.99702 1.20631 0.92085 0.98077 1.04501 1.19658 0.91735 0.95613 1.19582 1.19498 1.02270 0.89907 0.93790 1.21483 1.05041 0.86246 1.00635 1.24530 0.73171 0.90927 0.81257 1.90646 1.49306 1.68896 1.34065 1.86567 1.77404 1.28304 1.35130 1.22567 0.94873 0.78005 0.99476 1.22261 0.94183 0.98496 1.02218 1.20964 0.97349 0.89640 0.90037 1.44380 1.02838 1.53677 1.32503 1.19555 0.96860 1.03298 1.19674 0.91296 1.25843 0.99187 0.96498 1.03029 1.70175 1.24706 1.21842 1.41384 0.85173 0.78177 0.77589 0.79276 1.19055 1.21980 1.21459 1.20590 0.83191 0.91224 0.99615 1.22169 1.00752 0.96480 0.96681 0.89496 0.90779 0.89591 0.89751 0.89205 0.86915 0.89069 0.88930 0.89150 0.90969 0.90759 0.86208 0.86514 0.91697 0.91167 0.91082 0.96822 0.91620 0.93917 0.98141 0.91402 0.90442 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.26 71.23 0.73 -0.46 16 2 C 0.07 1.46 7.22 43.10 0.31 1.77 16 3 N -0.34 -7.71 12.58 -47.38 -0.60 -8.30 16 4 N -0.38 -6.57 4.01 -356.05 -1.43 -8.00 16 5 C 0.09 0.74 11.27 127.77 1.44 2.18 16 6 C 0.09 1.48 6.93 41.40 0.29 1.77 16 7 C -0.09 -0.83 9.72 71.24 0.69 -0.14 16 8 C -0.25 -4.78 5.35 -20.14 -0.11 -4.89 16 9 C -0.02 -0.29 4.41 29.85 0.13 -0.16 16 10 C -0.10 -1.75 5.79 29.85 0.17 -1.58 16 11 C 0.46 12.43 7.93 71.24 0.56 13.00 16 12 O -0.54 -17.91 15.20 21.97 0.33 -17.58 16 13 O -0.36 -11.03 9.88 -51.45 -0.51 -11.54 16 14 C 0.11 3.79 2.42 30.62 0.07 3.87 16 15 C -0.13 -4.80 5.72 30.67 0.18 -4.62 16 16 C 0.15 6.26 6.52 86.36 0.56 6.83 16 17 N -0.61 -31.04 2.99 -699.07 -2.09 -33.13 16 18 C -0.26 -14.51 9.58 84.03 0.81 -13.70 16 19 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 20 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 21 N -0.94 -55.01 11.19 21.65 0.24 -54.76 16 22 Si 0.97 44.54 29.59 68.60 2.03 46.57 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 26 C 0.18 8.72 5.30 86.36 0.46 9.18 16 27 C -0.12 -4.68 5.74 30.67 0.18 -4.50 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.09 1.20 7.25 -2.39 -0.02 1.18 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.28 7.05 -2.39 -0.02 0.26 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 0.41 7.08 -2.38 -0.02 0.39 16 36 H 0.09 0.79 7.78 -2.39 -0.02 0.77 16 37 H 0.07 1.43 7.20 -2.39 -0.02 1.41 16 38 H 0.07 1.39 7.73 -2.39 -0.02 1.37 16 39 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 2.53 7.16 -2.39 -0.02 2.52 16 42 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 44 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 46 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.07 3.66 6.07 -2.38 -0.01 3.65 16 49 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 50 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -72.85 403.13 5.79 -67.06 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.92 Total: 13.52 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.89 Total: 6.17 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -3.87 Total: -104.20 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.17 Total: -29.12 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.85 5.79 -67.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119347346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.128 kcal (2) G-P(sol) polarization free energy of solvation -72.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds