Wall clock time and date at job start Tue Mar 31 2020 20:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38129 * 126.29119 * 2 1 4 4 C 1.47288 * 126.42871 * 359.96098 * 3 2 1 5 5 O 1.21520 * 119.99873 * 359.71710 * 4 3 2 6 6 O 1.34753 * 120.00007 * 179.71719 * 4 3 2 7 7 C 1.45201 * 117.00117 * 179.97438 * 6 4 3 8 8 C 1.53037 * 109.46016 * 209.99871 * 7 6 4 9 9 C 1.53190 * 109.31114 * 178.61437 * 8 7 6 10 10 N 1.46924 * 108.89327 * 54.56294 * 9 8 7 11 11 C 1.36941 * 120.62900 * 126.45844 * 10 9 8 12 12 H 1.07996 * 120.00385 * 326.98437 * 11 10 9 13 13 C 1.38820 * 119.99982 * 146.97546 * 11 10 9 14 14 N 1.31623 * 119.99770 * 342.25821 * 13 11 10 15 15 Si 1.86791 * 120.00059 * 162.24900 * 13 11 10 16 16 H 1.48506 * 109.47110 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47172 * 120.00327 * 15 13 11 18 18 H 1.48504 * 109.47454 * 240.00400 * 15 13 11 19 19 C 1.46964 * 118.71757 * 306.64338 * 10 9 8 20 20 C 1.53039 * 109.45857 * 89.92833 * 7 6 4 21 21 C 1.41346 * 107.14326 * 179.70187 * 3 2 1 22 22 N 1.30427 * 108.01534 * 0.26207 * 21 3 2 23 23 N 1.34219 * 126.29941 * 180.14857 * 2 1 3 24 24 C 1.46494 * 125.74477 * 0.02562 * 23 2 1 25 25 C 1.53000 * 109.47598 * 173.68551 * 24 23 2 26 26 C 1.53000 * 109.47473 * 293.68905 * 24 23 2 27 27 C 1.53006 * 109.47149 * 53.68693 * 24 23 2 28 28 H 1.09001 * 109.47036 * 89.50364 * 1 2 3 29 29 H 1.09000 * 109.46954 * 209.50346 * 1 2 3 30 30 H 1.08994 * 109.47583 * 329.50539 * 1 2 3 31 31 H 1.09002 * 109.45652 * 329.97391 * 7 6 4 32 32 H 1.09004 * 109.49650 * 58.66629 * 8 7 6 33 33 H 1.08999 * 109.49893 * 298.56538 * 8 7 6 34 34 H 1.09001 * 109.58800 * 174.42625 * 9 8 7 35 35 H 1.08999 * 109.58791 * 294.70786 * 9 8 7 36 36 H 0.96994 * 119.99597 * 179.97438 * 14 13 11 37 37 H 1.08994 * 109.46521 * 293.57240 * 19 10 9 38 38 H 1.09000 * 109.70850 * 173.28269 * 19 10 9 39 39 H 1.09001 * 109.50200 * 301.34109 * 20 7 6 40 40 H 1.09006 * 109.49217 * 61.43537 * 20 7 6 41 41 H 1.07995 * 125.99143 * 180.26128 * 21 3 2 42 42 H 1.09004 * 109.46684 * 60.00338 * 25 24 23 43 43 H 1.08998 * 109.47498 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.47140 * 300.00386 * 25 24 23 45 45 H 1.08996 * 109.46963 * 68.31285 * 26 24 23 46 46 H 1.08993 * 109.47509 * 188.31326 * 26 24 23 47 47 H 1.09000 * 109.46755 * 308.31695 * 26 24 23 48 48 H 1.09004 * 109.46900 * 60.00035 * 27 24 23 49 49 H 1.08998 * 109.47530 * 179.97438 * 27 24 23 50 50 H 1.08998 * 109.46785 * 300.00323 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5197 -0.0008 5 8 0.7017 2.7873 -0.0068 6 8 2.8012 3.5097 0.0051 7 6 2.2980 4.8718 0.0033 8 6 3.2975 5.7837 -0.7119 9 6 2.7473 7.2130 -0.7422 10 7 2.4264 7.6285 0.6300 11 6 2.9391 8.7889 1.1456 12 1 3.9199 9.1265 0.8448 13 6 2.1981 9.5315 2.0547 14 7 0.9010 9.3355 2.1624 15 14 3.0418 10.8087 3.1253 16 1 4.4934 10.8355 2.8130 17 1 2.4535 12.1457 2.8575 18 1 2.8491 10.4608 4.5561 19 6 1.5480 6.7727 1.4398 20 6 2.1115 5.3482 1.4456 21 6 3.6598 0.6497 0.0070 22 7 3.6341 -0.6543 0.0053 23 7 2.3016 -1.0817 -0.0028 24 6 1.8500 -2.4753 -0.0070 25 6 3.0566 -3.4021 -0.1678 26 6 1.1409 -2.7857 1.3128 27 6 0.8805 -2.6938 -1.1703 28 1 -0.3633 0.0089 -1.0276 29 1 -0.3633 -0.8944 0.5061 30 1 -0.3634 0.8854 0.5215 31 1 1.3403 4.9043 -0.5164 32 1 3.4474 5.4298 -1.7319 33 1 4.2479 5.7709 -0.1784 34 1 3.4969 7.8843 -1.1615 35 1 1.8456 7.2446 -1.3538 36 1 0.3834 9.8541 2.7979 37 1 0.5471 6.7678 1.0081 38 1 1.5039 7.1524 2.4605 39 1 1.4175 4.6845 1.9613 40 1 3.0732 5.3395 1.9587 41 1 4.5460 1.2670 0.0128 42 1 3.7473 -3.2465 0.6610 43 1 2.7206 -4.4390 -0.1714 44 1 3.5618 -3.1810 -1.1081 45 1 0.2028 -2.2327 1.3600 46 1 0.9361 -3.8545 1.3727 47 1 1.7788 -2.4907 2.1460 48 1 1.3856 -2.4727 -2.1106 49 1 0.5448 -3.7308 -1.1737 50 1 0.0209 -2.0336 -1.0557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120893736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:56 Heat of formation + Delta-G solvation = 0.070412 kcal Electronic energy + Delta-G solvation = -29594.041001 eV Core-core repulsion = 25623.423415 eV Total energy + Delta-G solvation = -3970.617586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.85529 -39.83486 -37.44689 -37.05251 -35.61432 -32.69392 -32.63283 -30.82958 -30.13653 -29.67117 -28.05801 -27.99666 -27.51042 -25.20332 -23.47299 -22.46217 -22.19059 -21.69472 -19.98667 -19.30367 -19.07347 -17.45535 -16.88626 -16.33258 -15.98897 -15.79034 -15.22177 -15.18755 -14.79154 -14.44057 -14.27210 -13.93931 -13.55541 -13.39794 -13.28373 -13.04301 -12.93011 -12.83541 -12.73252 -12.70188 -12.62207 -12.41854 -12.29975 -12.21892 -11.71272 -11.61587 -11.45259 -11.16766 -11.14870 -10.79816 -10.74796 -10.57338 -10.26924 -10.14272 -10.09134 -9.90762 -9.59925 -9.58508 -9.33011 -8.81656 -8.46250 -6.62505 -5.79385 -3.25954 1.28536 1.96605 2.03912 3.12789 3.34640 3.38391 3.46302 3.48933 3.94308 4.19786 4.24575 4.33275 4.50371 4.62417 4.65149 4.92568 4.99678 5.04123 5.12541 5.17739 5.23475 5.24957 5.28352 5.32336 5.39773 5.41951 5.43262 5.51223 5.58251 5.63009 5.72979 5.73864 5.81530 5.86094 6.09040 6.27903 6.28342 6.42429 6.55138 6.60041 6.64914 6.65470 6.76867 6.95660 7.06269 7.30914 7.40262 7.58387 7.83152 8.20718 8.47811 9.20745 9.82976 10.43297 11.29405 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.002219 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.764531 B =12617.171830 C =12775.658966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.165 3.835 3 C -0.281 4.281 4 C 0.540 3.460 5 O -0.521 6.521 6 O -0.354 6.354 7 C 0.101 3.899 8 C -0.127 4.127 9 C 0.148 3.852 10 N -0.591 5.591 11 C -0.259 4.259 12 H 0.065 0.935 13 C 0.008 3.992 14 N -0.897 5.897 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.290 1.290 18 H -0.288 1.288 19 C 0.179 3.821 20 C -0.153 4.153 21 C 0.102 3.898 22 N -0.300 5.300 23 N -0.350 5.350 24 C 0.177 3.823 25 C -0.142 4.142 26 C -0.167 4.167 27 C -0.170 4.170 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.254 0.746 37 H 0.024 0.976 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -27.442 -5.373 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.032 3.968 3 C -0.294 4.294 4 C 0.386 3.614 5 O -0.411 6.411 6 O -0.271 6.271 7 C 0.048 3.952 8 C -0.167 4.167 9 C 0.022 3.978 10 N -0.314 5.314 11 C -0.388 4.388 12 H 0.082 0.918 13 C -0.192 4.192 14 N -0.540 5.540 15 Si 0.730 3.270 16 H -0.201 1.201 17 H -0.217 1.217 18 H -0.215 1.215 19 C 0.053 3.947 20 C -0.192 4.192 21 C -0.085 4.085 22 N -0.117 5.117 23 N -0.131 5.131 24 C 0.095 3.905 25 C -0.199 4.199 26 C -0.225 4.225 27 C -0.228 4.228 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.213 0.787 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.629 -28.441 -5.271 28.933 hybrid contribution -0.158 1.491 0.647 1.633 sum 0.470 -26.951 -4.624 27.349 Atomic orbital electron populations 1.20950 0.86287 1.05044 1.04297 1.21380 0.94816 0.86221 0.94348 1.19182 0.93455 0.90700 1.26051 1.19869 0.84013 0.85208 0.72353 1.90777 1.18009 1.84657 1.47693 1.86558 1.39770 1.17177 1.83551 1.22864 0.98319 0.75499 0.98564 1.22222 0.98963 0.96556 0.98948 1.20893 0.97507 0.91209 0.88223 1.44061 1.56888 1.22485 1.07942 1.19151 0.97767 0.98856 1.23075 0.91757 1.25187 0.94768 0.97551 1.01687 1.70065 1.04484 1.42661 1.36798 0.86262 0.79188 0.81058 0.80473 1.20106 1.21670 1.21497 1.20657 0.91549 0.84773 0.97769 1.22641 1.01750 1.00554 0.94272 1.24190 0.97501 0.91516 0.95318 1.77182 0.96003 1.13062 1.25502 1.48785 1.03945 1.05480 1.54856 1.20838 0.95925 0.76702 0.97030 1.21895 0.96283 0.97697 1.04043 1.22393 1.01178 1.03189 0.95745 1.22436 0.99328 1.03704 0.97359 0.89322 0.90529 0.87487 0.90342 0.92286 0.91186 0.91859 0.96141 0.93608 0.95802 0.90079 0.92776 0.91734 0.78674 0.90981 0.90816 0.91314 0.91141 0.89962 0.91314 0.91387 0.89876 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 7.95 36.01 0.29 -0.72 16 2 C 0.16 1.94 6.53 -81.59 -0.53 1.41 16 3 C -0.28 -3.97 6.13 -105.08 -0.64 -4.61 16 4 C 0.54 9.10 7.93 34.41 0.27 9.37 16 5 O -0.52 -9.70 14.12 -19.28 -0.27 -9.97 16 6 O -0.35 -6.20 9.73 -40.63 -0.40 -6.60 16 7 C 0.10 1.94 2.42 -26.69 -0.06 1.87 16 8 C -0.13 -2.33 5.74 -26.61 -0.15 -2.48 16 9 C 0.15 3.16 6.51 -3.71 -0.02 3.14 16 10 N -0.59 -15.07 2.97 -172.30 -0.51 -15.58 16 11 C -0.26 -7.16 9.52 -15.05 -0.14 -7.30 16 12 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 13 C 0.01 0.22 4.86 -17.43 -0.08 0.13 16 14 N -0.90 -26.38 11.65 55.49 0.65 -25.74 16 15 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 C 0.18 4.40 5.28 -3.69 -0.02 4.38 16 20 C -0.15 -3.17 5.72 -26.61 -0.15 -3.32 16 21 C 0.10 1.30 11.87 -16.97 -0.20 1.10 16 22 N -0.30 -3.68 11.54 30.87 0.36 -3.32 16 23 N -0.35 -3.70 3.43 -44.00 -0.15 -3.85 16 24 C 0.18 1.25 1.06 -131.82 -0.14 1.11 16 25 C -0.14 -0.90 7.98 37.16 0.30 -0.60 16 26 C -0.17 -0.95 8.49 37.16 0.32 -0.64 16 27 C -0.17 -0.92 8.35 37.16 0.31 -0.61 16 28 H 0.09 0.73 7.77 -51.93 -0.40 0.33 16 29 H 0.08 0.51 4.62 -51.93 -0.24 0.27 16 30 H 0.11 1.22 6.54 -51.93 -0.34 0.88 16 31 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 2.19 6.50 -51.93 -0.34 1.85 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.20 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.38 5.60 -51.93 -0.29 0.09 16 46 H 0.08 0.29 8.13 -51.93 -0.42 -0.13 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.07 0.39 5.10 -51.93 -0.26 0.12 16 LS Contribution 391.94 15.07 5.91 5.91 Total: -1.00 -32.76 391.94 -8.25 -41.01 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.12 Total: -0.82 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.68 Total: 2.23 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.34 Total: -48.49 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.67 Total: -16.57 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.76 -8.25 -41.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120893736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.083 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds