Wall clock time and date at job start Tue Mar 31 2020 20:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38129 * 126.29119 * 2 1 4 4 C 1.47288 * 126.42871 * 359.96098 * 3 2 1 5 5 O 1.21520 * 119.99873 * 359.71710 * 4 3 2 6 6 O 1.34753 * 120.00007 * 179.71719 * 4 3 2 7 7 C 1.45201 * 117.00117 * 179.97438 * 6 4 3 8 8 C 1.53037 * 109.46016 * 209.99871 * 7 6 4 9 9 C 1.53190 * 109.31114 * 178.61437 * 8 7 6 10 10 N 1.46924 * 108.89327 * 54.56294 * 9 8 7 11 11 C 1.36941 * 120.62900 * 126.45844 * 10 9 8 12 12 H 1.07996 * 120.00385 * 326.98437 * 11 10 9 13 13 C 1.38820 * 119.99982 * 146.97546 * 11 10 9 14 14 N 1.31623 * 119.99770 * 342.25821 * 13 11 10 15 15 Si 1.86791 * 120.00059 * 162.24900 * 13 11 10 16 16 H 1.48506 * 109.47110 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47172 * 120.00327 * 15 13 11 18 18 H 1.48504 * 109.47454 * 240.00400 * 15 13 11 19 19 C 1.46964 * 118.71757 * 306.64338 * 10 9 8 20 20 C 1.53039 * 109.45857 * 89.92833 * 7 6 4 21 21 C 1.41346 * 107.14326 * 179.70187 * 3 2 1 22 22 N 1.30427 * 108.01534 * 0.26207 * 21 3 2 23 23 N 1.34219 * 126.29941 * 180.14857 * 2 1 3 24 24 C 1.46494 * 125.74477 * 0.02562 * 23 2 1 25 25 C 1.53000 * 109.47598 * 173.68551 * 24 23 2 26 26 C 1.53000 * 109.47473 * 293.68905 * 24 23 2 27 27 C 1.53006 * 109.47149 * 53.68693 * 24 23 2 28 28 H 1.09001 * 109.47036 * 89.50364 * 1 2 3 29 29 H 1.09000 * 109.46954 * 209.50346 * 1 2 3 30 30 H 1.08994 * 109.47583 * 329.50539 * 1 2 3 31 31 H 1.09002 * 109.45652 * 329.97391 * 7 6 4 32 32 H 1.09004 * 109.49650 * 58.66629 * 8 7 6 33 33 H 1.08999 * 109.49893 * 298.56538 * 8 7 6 34 34 H 1.09001 * 109.58800 * 174.42625 * 9 8 7 35 35 H 1.08999 * 109.58791 * 294.70786 * 9 8 7 36 36 H 0.96994 * 119.99597 * 179.97438 * 14 13 11 37 37 H 1.08994 * 109.46521 * 293.57240 * 19 10 9 38 38 H 1.09000 * 109.70850 * 173.28269 * 19 10 9 39 39 H 1.09001 * 109.50200 * 301.34109 * 20 7 6 40 40 H 1.09006 * 109.49217 * 61.43537 * 20 7 6 41 41 H 1.07995 * 125.99143 * 180.26128 * 21 3 2 42 42 H 1.09004 * 109.46684 * 60.00338 * 25 24 23 43 43 H 1.08998 * 109.47498 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.47140 * 300.00386 * 25 24 23 45 45 H 1.08996 * 109.46963 * 68.31285 * 26 24 23 46 46 H 1.08993 * 109.47509 * 188.31326 * 26 24 23 47 47 H 1.09000 * 109.46755 * 308.31695 * 26 24 23 48 48 H 1.09004 * 109.46900 * 60.00035 * 27 24 23 49 49 H 1.08998 * 109.47530 * 179.97438 * 27 24 23 50 50 H 1.08998 * 109.46785 * 300.00323 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5197 -0.0008 5 8 0.7017 2.7873 -0.0068 6 8 2.8012 3.5097 0.0051 7 6 2.2980 4.8718 0.0033 8 6 3.2975 5.7837 -0.7119 9 6 2.7473 7.2130 -0.7422 10 7 2.4264 7.6285 0.6300 11 6 2.9391 8.7889 1.1456 12 1 3.9199 9.1265 0.8448 13 6 2.1981 9.5315 2.0547 14 7 0.9010 9.3355 2.1624 15 14 3.0418 10.8087 3.1253 16 1 4.4934 10.8355 2.8130 17 1 2.4535 12.1457 2.8575 18 1 2.8491 10.4608 4.5561 19 6 1.5480 6.7727 1.4398 20 6 2.1115 5.3482 1.4456 21 6 3.6598 0.6497 0.0070 22 7 3.6341 -0.6543 0.0053 23 7 2.3016 -1.0817 -0.0028 24 6 1.8500 -2.4753 -0.0070 25 6 3.0566 -3.4021 -0.1678 26 6 1.1409 -2.7857 1.3128 27 6 0.8805 -2.6938 -1.1703 28 1 -0.3633 0.0089 -1.0276 29 1 -0.3633 -0.8944 0.5061 30 1 -0.3634 0.8854 0.5215 31 1 1.3403 4.9043 -0.5164 32 1 3.4474 5.4298 -1.7319 33 1 4.2479 5.7709 -0.1784 34 1 3.4969 7.8843 -1.1615 35 1 1.8456 7.2446 -1.3538 36 1 0.3834 9.8541 2.7979 37 1 0.5471 6.7678 1.0081 38 1 1.5039 7.1524 2.4605 39 1 1.4175 4.6845 1.9613 40 1 3.0732 5.3395 1.9587 41 1 4.5460 1.2670 0.0128 42 1 3.7473 -3.2465 0.6610 43 1 2.7206 -4.4390 -0.1714 44 1 3.5618 -3.1810 -1.1081 45 1 0.2028 -2.2327 1.3600 46 1 0.9361 -3.8545 1.3727 47 1 1.7788 -2.4907 2.1460 48 1 1.3856 -2.4727 -2.1106 49 1 0.5448 -3.7308 -1.1737 50 1 0.0209 -2.0336 -1.0557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120893736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:55 Heat of formation + Delta-G solvation = -17.884853 kcal Electronic energy + Delta-G solvation = -29594.819600 eV Core-core repulsion = 25623.423415 eV Total energy + Delta-G solvation = -3971.396185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.76327 -41.21455 -38.99168 -37.81766 -37.15389 -34.56747 -33.53371 -32.18824 -31.68546 -31.33252 -28.85907 -28.42293 -28.13377 -27.07270 -24.82781 -23.95177 -23.35162 -23.22015 -21.17677 -20.95815 -19.95562 -18.83938 -18.53402 -17.62567 -17.05983 -16.88043 -16.65180 -16.31413 -15.84707 -15.71022 -15.42150 -15.09724 -15.01356 -14.90018 -14.50972 -14.38821 -14.27602 -13.98363 -13.71038 -13.50466 -13.24719 -13.22661 -13.12306 -13.10284 -12.97839 -12.79886 -12.69044 -12.65835 -12.39745 -12.31412 -12.24936 -12.10339 -11.91229 -11.85861 -11.56462 -11.46835 -11.27323 -11.01670 -10.57729 -10.42511 -9.81467 -8.69274 -7.90844 -5.41223 0.28281 1.01030 1.16642 1.46556 1.48670 1.59821 1.83697 2.15868 2.50257 3.24925 3.30551 3.46018 3.59219 3.70747 3.78691 3.81119 3.83868 3.84749 3.91046 4.03129 4.20634 4.37885 4.39881 4.50065 4.56238 4.58721 4.60176 4.64642 4.66751 4.73888 4.75739 4.80382 4.83817 4.90241 4.92728 4.99710 5.05156 5.09597 5.15923 5.19883 5.21745 5.26243 5.34047 5.42415 5.53856 5.66273 5.67521 5.88203 6.38806 6.46921 6.87197 7.11019 7.78976 8.35755 9.16675 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.002219 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.764531 B =12617.171830 C =12775.658966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.172 3.828 3 C -0.313 4.313 4 C 0.538 3.462 5 O -0.545 6.545 6 O -0.349 6.349 7 C 0.109 3.891 8 C -0.114 4.114 9 C 0.144 3.856 10 N -0.609 5.609 11 C -0.268 4.268 12 H 0.070 0.930 13 C -0.047 4.047 14 N -0.933 5.933 15 Si 0.968 3.032 16 H -0.263 1.263 17 H -0.291 1.291 18 H -0.290 1.290 19 C 0.189 3.811 20 C -0.138 4.138 21 C 0.100 3.900 22 N -0.311 5.311 23 N -0.342 5.342 24 C 0.164 3.836 25 C -0.138 4.138 26 C -0.165 4.165 27 C -0.168 4.168 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.017 0.983 36 H 0.251 0.749 37 H -0.001 1.001 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.210 0.790 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.112 0.888 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 -29.921 -5.930 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.038 3.962 3 C -0.326 4.326 4 C 0.386 3.614 5 O -0.437 6.437 6 O -0.266 6.266 7 C 0.054 3.946 8 C -0.152 4.152 9 C 0.019 3.981 10 N -0.333 5.333 11 C -0.398 4.398 12 H 0.087 0.913 13 C -0.243 4.243 14 N -0.578 5.578 15 Si 0.796 3.204 16 H -0.187 1.187 17 H -0.218 1.218 18 H -0.217 1.217 19 C 0.063 3.937 20 C -0.178 4.178 21 C -0.087 4.087 22 N -0.129 5.129 23 N -0.121 5.121 24 C 0.083 3.917 25 C -0.196 4.196 26 C -0.222 4.222 27 C -0.226 4.226 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.226 0.774 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.129 0.871 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.130 0.870 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.386 -30.967 -5.852 31.546 hybrid contribution -0.419 2.104 0.771 2.279 sum 0.967 -28.863 -5.081 29.323 Atomic orbital electron populations 1.21023 0.84640 1.05478 1.05211 1.21702 0.95832 0.85980 0.92726 1.19186 0.94731 0.89649 1.29056 1.20330 0.83627 0.85914 0.71571 1.90766 1.18861 1.85004 1.49101 1.86560 1.39713 1.16448 1.83832 1.22585 0.98205 0.76804 0.96978 1.22033 0.98232 0.94222 1.00760 1.21047 0.97707 0.93312 0.86060 1.44317 1.56856 1.22343 1.09763 1.19502 0.97964 0.99277 1.23040 0.91269 1.25989 0.95285 0.99899 1.03108 1.70209 1.05930 1.44065 1.37616 0.85209 0.78712 0.78258 0.78252 1.18706 1.21760 1.21708 1.20374 0.90774 0.86819 0.95772 1.22392 1.01389 0.98045 0.95925 1.24421 0.97515 0.91793 0.95008 1.77152 0.97260 1.12826 1.25698 1.49209 1.03187 1.06595 1.53134 1.21346 0.96789 0.74815 0.98730 1.21902 0.95726 0.99269 1.02682 1.22411 1.00643 1.05157 0.94026 1.22464 0.98649 1.05650 0.95803 0.87998 0.87501 0.89666 0.91649 0.89142 0.90851 0.90884 0.96529 0.93985 0.98291 0.93123 0.92638 0.91606 0.77389 0.92446 0.87784 0.92554 0.90695 0.87070 0.93007 0.92477 0.86972 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 7.95 71.24 0.57 -1.26 16 2 C 0.17 3.87 6.53 42.17 0.28 4.15 16 3 C -0.31 -8.71 6.13 -20.16 -0.12 -8.83 16 4 C 0.54 18.12 7.93 70.20 0.56 18.68 16 5 O -0.55 -20.59 14.12 19.77 0.28 -20.31 16 6 O -0.35 -12.03 9.73 -56.63 -0.55 -12.58 16 7 C 0.11 4.13 2.42 30.62 0.07 4.20 16 8 C -0.11 -3.99 5.74 30.67 0.18 -3.81 16 9 C 0.14 6.08 6.51 86.36 0.56 6.65 16 10 N -0.61 -31.50 2.97 -699.02 -2.07 -33.57 16 11 C -0.27 -14.90 9.52 84.03 0.80 -14.10 16 12 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 13 C -0.05 -2.64 4.86 84.86 0.41 -2.23 16 14 N -0.93 -56.52 11.65 21.65 0.25 -56.27 16 15 Si 0.97 45.25 29.59 68.60 2.03 47.28 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 C 0.19 9.63 5.28 86.35 0.46 10.09 16 20 C -0.14 -5.83 5.72 30.67 0.18 -5.65 16 21 C 0.10 2.47 11.87 85.67 1.02 3.49 16 22 N -0.31 -7.37 11.54 -56.25 -0.65 -8.02 16 23 N -0.34 -6.72 3.43 -293.12 -1.01 -7.73 16 24 C 0.16 1.91 1.06 3.61 0.00 1.91 16 25 C -0.14 -1.45 7.98 71.98 0.57 -0.88 16 26 C -0.16 -1.40 8.49 71.98 0.61 -0.79 16 27 C -0.17 -1.28 8.35 71.98 0.60 -0.68 16 28 H 0.10 1.50 7.77 -2.39 -0.02 1.49 16 29 H 0.11 1.13 4.62 -2.39 -0.01 1.12 16 30 H 0.08 1.92 6.54 -2.39 -0.02 1.91 16 31 H 0.07 2.67 7.16 -2.39 -0.02 2.66 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.07 2.91 7.93 -2.39 -0.02 2.89 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.05 2.86 6.50 -2.39 -0.02 2.84 16 39 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 41 H 0.21 4.28 8.06 -2.91 -0.02 4.25 16 42 H 0.06 0.78 8.11 -2.38 -0.02 0.76 16 43 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.57 5.60 -2.39 -0.01 0.55 16 46 H 0.11 0.32 8.13 -2.39 -0.02 0.30 16 47 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 50 H 0.08 0.55 5.10 -2.39 -0.01 0.54 16 Total: -1.00 -72.56 391.94 5.95 -66.61 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.93 Total: 13.66 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 6.74 Total: 10.93 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.48 Total: -105.59 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.27 Total: -32.89 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.56 5.95 -66.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120893736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.726 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds