Wall clock time and date at job start Tue Mar 31 2020 20:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.90268 * 2 1 4 4 N 1.40083 * 108.20671 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.03510 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47179 * 90.02956 * 5 4 3 7 7 H 1.07994 * 119.99762 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00029 * 179.72400 * 6 5 4 9 9 N 1.31516 * 119.99934 * 180.27341 * 8 6 5 10 10 Si 1.86802 * 120.00413 * 0.27336 * 8 6 5 11 11 H 1.48496 * 109.47039 * 89.99596 * 10 8 6 12 12 H 1.48491 * 109.47390 * 210.00128 * 10 8 6 13 13 H 1.48504 * 109.46978 * 330.00397 * 10 8 6 14 14 C 1.34946 * 107.92557 * 0.26400 * 4 3 2 15 15 C 1.50695 * 126.12784 * 179.73615 * 14 4 3 16 16 C 1.35321 * 107.74678 * 359.57336 * 14 4 3 17 17 C 1.50694 * 126.03914 * 180.16344 * 16 14 4 18 18 C 1.53002 * 109.47004 * 270.28441 * 17 16 14 19 19 C 1.50707 * 109.46996 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99750 * 355.05766 * 19 18 17 21 21 N 1.34771 * 119.99757 * 175.05497 * 19 18 17 22 22 C 1.46507 * 119.99823 * 185.06434 * 21 19 18 23 23 C 1.52999 * 109.46824 * 90.00280 * 22 21 19 24 24 O 1.42898 * 109.47151 * 65.00126 * 23 22 21 25 25 C 1.46496 * 120.00175 * 5.06997 * 21 19 18 26 26 C 1.53004 * 117.49749 * 182.85523 * 25 21 19 27 27 C 1.53000 * 60.00051 * 252.51161 * 26 25 21 28 28 H 1.09008 * 109.46782 * 90.02826 * 1 2 3 29 29 H 1.08999 * 109.47379 * 210.02923 * 1 2 3 30 30 H 1.09000 * 109.47119 * 330.03078 * 1 2 3 31 31 H 1.09004 * 109.47447 * 330.02905 * 5 4 3 32 32 H 1.09004 * 109.47144 * 210.02382 * 5 4 3 33 33 H 0.96997 * 120.00114 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47364 * 90.01841 * 15 14 4 35 35 H 1.08997 * 109.47392 * 210.02294 * 15 14 4 36 36 H 1.09007 * 109.47179 * 330.02049 * 15 14 4 37 37 H 1.08994 * 109.47519 * 30.28274 * 17 16 14 38 38 H 1.09002 * 109.46702 * 150.28618 * 17 16 14 39 39 H 1.09006 * 109.47069 * 299.99946 * 18 17 16 40 40 H 1.08997 * 109.47310 * 60.00046 * 18 17 16 41 41 H 1.09001 * 109.47066 * 210.00006 * 22 21 19 42 42 H 1.08996 * 109.47124 * 330.00608 * 22 21 19 43 43 H 1.09004 * 109.47242 * 184.99783 * 23 22 21 44 44 H 1.08997 * 109.47032 * 305.00311 * 23 22 21 45 45 H 0.96702 * 114.00537 * 180.02562 * 24 23 22 46 46 H 1.08995 * 115.55289 * 328.56606 * 25 21 19 47 47 H 1.08996 * 117.50367 * 0.02562 * 26 25 21 48 48 H 1.09007 * 117.49720 * 145.02308 * 26 25 21 49 49 H 1.09000 * 117.49746 * 252.51214 * 27 26 25 50 50 H 1.08999 * 117.52084 * 107.48583 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7899 1.5006 0.0003 6 6 5.1950 1.7982 1.4210 7 1 4.6290 1.3836 2.2420 8 6 6.2913 2.5955 1.6726 9 7 6.6481 2.8508 2.9125 10 14 7.2700 3.3132 0.2526 11 1 6.7052 4.6351 -0.1197 12 1 8.6879 3.4781 0.6619 13 1 7.1949 2.3968 -0.9136 14 6 3.6142 -0.7155 -0.0050 15 6 4.8349 -1.5990 -0.0121 16 6 2.3271 -1.1331 0.0006 17 6 1.8599 -2.5658 0.0009 18 6 1.7016 -3.0509 -1.4415 19 6 1.2338 -4.4835 -1.4413 20 8 1.1315 -5.0878 -0.3947 21 7 0.9290 -5.0930 -2.6040 22 6 0.3693 -6.4469 -2.5966 23 6 -1.1574 -6.3672 -2.5338 24 8 -1.6522 -5.7601 -3.7291 25 6 1.1576 -4.4018 -3.8753 26 6 0.7293 -5.1199 -5.1567 27 6 2.2147 -4.9840 -4.8158 28 1 -0.3633 -0.0005 -1.0278 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3633 0.8903 0.5134 31 1 4.5564 2.4330 -0.5138 32 1 5.6094 0.9978 -0.5134 33 1 7.4191 3.4120 3.0895 34 1 5.1320 -1.8166 1.0138 35 1 4.6061 -2.5307 -0.5294 36 1 5.6498 -1.0888 -0.5258 37 1 2.5933 -3.1871 0.5147 38 1 0.9011 -2.6352 0.5148 39 1 0.9680 -2.4296 -1.9554 40 1 2.6603 -2.9815 -1.9555 41 1 0.6688 -6.9689 -3.5054 42 1 0.7408 -6.9889 -1.7270 43 1 -1.5701 -7.3716 -2.4388 44 1 -1.4548 -5.7691 -1.6725 45 1 -2.6151 -5.6765 -3.7583 46 1 1.0521 -3.3174 -3.8464 47 1 0.2772 -6.1063 -5.0539 48 1 0.3419 -4.5077 -5.9712 49 1 2.8044 -4.2825 -5.4060 50 1 2.7404 -5.8810 -4.4886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132422494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:43 Heat of formation + Delta-G solvation = -17.079819 kcal Electronic energy + Delta-G solvation = -29363.698289 eV Core-core repulsion = 25392.337013 eV Total energy + Delta-G solvation = -3971.361276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.20225 -41.13117 -38.58420 -37.35512 -36.10870 -34.88312 -34.27764 -34.24977 -32.14195 -30.96311 -30.17259 -28.06648 -27.72499 -25.41118 -24.03986 -23.66944 -23.20359 -22.69212 -20.35560 -20.19074 -19.63611 -19.25617 -18.69000 -17.90499 -17.50178 -17.23156 -16.68248 -16.37989 -15.97281 -15.65430 -15.27933 -15.10792 -14.86811 -14.85232 -14.50243 -14.44024 -14.15729 -13.98267 -13.70009 -13.51001 -13.50050 -13.28259 -13.21089 -13.06796 -12.83213 -12.73964 -12.60238 -12.52081 -12.46658 -12.15208 -11.95981 -11.91967 -11.81968 -11.74696 -11.42514 -11.17786 -10.96511 -10.92302 -10.63475 -9.84354 -9.43461 -9.01600 -8.42890 -6.54091 1.13595 1.31730 1.35030 1.44264 1.60559 1.81154 1.89337 2.05147 2.24177 2.89479 3.04684 3.36753 3.61517 3.83513 3.90517 3.90862 4.03238 4.12999 4.16893 4.22330 4.26336 4.27011 4.34016 4.44262 4.48648 4.56765 4.61414 4.61692 4.75226 4.79600 4.81101 4.82674 4.87344 4.89827 4.91100 5.01611 5.02440 5.10756 5.20662 5.21957 5.29389 5.34965 5.40911 5.49392 5.56578 5.91806 6.05436 6.40988 6.41815 6.50623 6.92533 7.05377 7.10356 7.19161 8.74060 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.002485 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.638204 B =11263.170098 C =11685.426054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.056 3.944 3 N -0.346 5.346 4 N -0.355 5.355 5 C 0.241 3.759 6 C -0.550 4.550 7 H 0.020 0.980 8 C 0.019 3.981 9 N -0.938 5.938 10 Si 0.953 3.047 11 H -0.266 1.266 12 H -0.273 1.273 13 H -0.234 1.234 14 C 0.081 3.919 15 C -0.085 4.085 16 C -0.257 4.257 17 C -0.004 4.004 18 C -0.120 4.120 19 C 0.519 3.481 20 O -0.578 6.578 21 N -0.578 5.578 22 C 0.105 3.895 23 C 0.068 3.932 24 O -0.573 6.573 25 C 0.060 3.940 26 C -0.150 4.150 27 C -0.197 4.197 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.274 0.726 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.031 0.969 45 H 0.392 0.608 46 H 0.133 0.867 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.111 0.889 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.957 -20.217 -20.222 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 N -0.169 5.169 4 N -0.135 5.135 5 C 0.121 3.879 6 C -0.589 4.589 7 H 0.039 0.961 8 C -0.180 4.180 9 N -0.577 5.577 10 Si 0.774 3.226 11 H -0.191 1.191 12 H -0.198 1.198 13 H -0.157 1.157 14 C -0.048 4.048 15 C -0.143 4.143 16 C -0.269 4.269 17 C -0.043 4.043 18 C -0.159 4.159 19 C 0.309 3.691 20 O -0.458 6.458 21 N -0.308 5.308 22 C -0.018 4.018 23 C -0.011 4.011 24 O -0.381 6.381 25 C -0.044 4.044 26 C -0.187 4.187 27 C -0.236 4.236 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.241 0.759 46 H 0.151 0.849 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.129 0.871 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.087 -19.046 -19.688 30.359 hybrid contribution 0.063 -0.028 0.674 0.678 sum -13.024 -19.074 -19.014 29.916 Atomic orbital electron populations 1.20212 0.84696 1.03355 1.03875 1.22777 0.98157 0.90180 0.99799 1.77200 0.87640 1.24808 1.27265 1.48667 1.05162 1.04977 1.54655 1.19680 0.80959 0.90529 0.96754 1.21256 1.13554 1.32811 0.91235 0.96144 1.25876 0.97645 0.95352 0.99146 1.70040 1.27706 1.38270 1.21652 0.85648 0.77855 0.79925 0.79185 1.19058 1.19791 1.15681 1.21439 0.98208 0.84605 1.00558 1.20472 0.92429 0.98074 1.03337 1.19716 0.90526 0.96466 1.20148 1.19360 1.01158 0.88483 0.95285 1.21617 1.03988 0.91226 0.99098 1.21022 0.75931 0.89530 0.82611 1.90678 1.55165 1.67604 1.32372 1.47404 1.62004 1.16131 1.05283 1.21654 0.92450 0.83755 1.03900 1.22446 0.94047 0.97515 0.87095 1.86484 1.28126 1.83908 1.39550 1.21848 1.05322 0.96571 0.80681 1.23237 0.96051 1.02787 0.96649 1.23524 0.92957 1.03838 1.03234 0.88771 0.89292 0.91712 0.93814 0.91278 0.91719 0.91133 0.87540 0.90844 0.91990 0.91337 0.87728 0.87960 0.88512 0.89507 0.90941 0.95048 0.75889 0.84930 0.87788 0.87294 0.87079 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 10.26 71.24 0.73 -0.94 16 2 C 0.06 2.08 7.22 43.10 0.31 2.39 16 3 N -0.35 -15.92 12.58 -47.38 -0.60 -16.51 16 4 N -0.35 -16.47 3.60 -338.40 -1.22 -17.69 16 5 C 0.24 11.71 5.07 85.63 0.43 12.15 16 6 C -0.55 -32.37 9.94 25.60 0.25 -32.11 16 7 H 0.02 1.40 8.06 -2.91 -0.02 1.37 16 8 C 0.02 1.11 5.47 84.65 0.46 1.57 16 9 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 10 Si 0.95 41.56 27.47 68.60 1.88 43.44 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.23 -8.97 6.54 99.48 0.65 -8.32 16 14 C 0.08 3.17 6.93 41.41 0.29 3.46 16 15 C -0.09 -2.69 9.72 71.23 0.69 -2.00 16 16 C -0.26 -8.94 5.35 -20.14 -0.11 -9.05 16 17 C 0.00 -0.11 4.42 29.85 0.13 0.02 16 18 C -0.12 -2.56 4.31 29.85 0.13 -2.43 16 19 C 0.52 12.00 7.66 87.66 0.67 12.67 16 20 O -0.58 -17.48 15.54 -3.04 -0.05 -17.53 16 21 N -0.58 -10.25 2.76 -797.82 -2.21 -12.46 16 22 C 0.10 1.59 5.43 86.38 0.47 2.06 16 23 C 0.07 0.85 7.39 71.98 0.53 1.38 16 24 O -0.57 -6.21 11.14 -148.98 -1.66 -7.87 16 25 C 0.06 0.83 5.74 44.99 0.26 1.09 16 26 C -0.15 -1.66 8.50 30.60 0.26 -1.40 16 27 C -0.20 -2.30 10.34 30.60 0.32 -1.98 16 28 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.09 2.01 7.26 -2.39 -0.02 2.00 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 2.11 7.58 -2.39 -0.02 2.09 16 32 H 0.07 3.01 6.09 -2.38 -0.01 2.99 16 33 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.11 2.57 7.79 -2.39 -0.02 2.55 16 36 H 0.07 2.25 7.07 -2.38 -0.02 2.23 16 37 H 0.06 1.83 7.70 -2.39 -0.02 1.81 16 38 H 0.07 1.91 7.25 -2.39 -0.02 1.89 16 39 H 0.10 1.96 7.48 -2.38 -0.02 1.94 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 1.17 6.18 -2.39 -0.01 1.16 16 42 H 0.09 1.53 7.36 -2.39 -0.02 1.51 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.39 1.40 9.12 -74.06 -0.68 0.73 16 46 H 0.13 1.71 6.85 -2.39 -0.02 1.70 16 47 H 0.10 1.22 5.37 -2.39 -0.01 1.21 16 48 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -79.56 404.29 2.51 -77.05 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.22 Total: 22.56 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 5.83 Total: -13.12 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.72 Total: -104.51 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -1.71 Total: -25.40 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.44 kcal Total: -79.56 2.51 -77.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132422494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.966 kcal (2) G-P(sol) polarization free energy of solvation -79.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds