Wall clock time and date at job start Tue Mar 31 2020 19:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40218 * 120.37884 * 2 1 4 4 C 1.35255 * 120.03510 * 179.97438 * 3 2 1 5 5 N 1.35964 * 120.81806 * 0.02562 * 4 3 2 6 6 C 1.46505 * 119.61355 * 180.02562 * 5 4 3 7 7 C 1.34662 * 120.76939 * 359.97438 * 5 4 3 8 8 O 1.22067 * 120.03135 * 180.02562 * 7 5 4 9 9 C 1.36790 * 120.38522 * 179.72331 * 2 1 3 10 10 N 1.40217 * 120.39707 * 0.02562 * 9 2 1 11 11 C 1.34776 * 119.99877 * 238.40747 * 10 9 2 12 12 O 1.21607 * 120.00102 * 5.08442 * 11 10 9 13 13 N 1.34777 * 120.00346 * 185.08664 * 11 10 9 14 14 C 1.46501 * 119.99745 * 359.97438 * 13 11 10 15 15 C 1.50707 * 109.46819 * 90.00101 * 14 13 11 16 16 H 1.07999 * 120.00037 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99478 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00566 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99677 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47183 * 89.99658 * 19 17 15 21 21 H 1.48499 * 109.47018 * 209.99639 * 19 17 15 22 22 H 1.48502 * 109.47047 * 329.99573 * 19 17 15 23 23 C 1.46495 * 120.00140 * 179.97438 * 13 11 10 24 24 C 1.53008 * 109.46905 * 89.99959 * 23 13 11 25 25 C 1.53004 * 109.46860 * 179.97438 * 24 23 13 26 26 C 1.52997 * 109.46980 * 64.99989 * 25 24 23 27 27 C 1.52996 * 109.46913 * 185.00120 * 25 24 23 28 28 H 1.08993 * 109.46995 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46782 * 239.99646 * 1 2 3 30 30 H 1.09001 * 109.46361 * 119.99954 * 1 2 3 31 31 H 1.07994 * 119.98393 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.59494 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47038 * 359.97438 * 6 5 4 34 34 H 1.09002 * 109.46889 * 119.99886 * 6 5 4 35 35 H 1.09000 * 109.46850 * 240.00140 * 6 5 4 36 36 H 0.96998 * 120.00064 * 58.40015 * 10 9 2 37 37 H 1.08994 * 109.47109 * 209.99829 * 14 13 11 38 38 H 1.09005 * 109.47145 * 330.00358 * 14 13 11 39 39 H 0.96995 * 120.00187 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47420 * 209.99820 * 23 13 11 41 41 H 1.09000 * 109.47337 * 330.00022 * 23 13 11 42 42 H 1.08994 * 109.47279 * 299.99765 * 24 23 13 43 43 H 1.09005 * 109.46699 * 60.00156 * 24 23 13 44 44 H 1.09004 * 109.47087 * 304.99996 * 25 24 23 45 45 H 1.09004 * 109.47205 * 60.00079 * 26 25 24 46 46 H 1.09004 * 109.46836 * 179.97438 * 26 25 24 47 47 H 1.08994 * 109.47833 * 299.99653 * 26 25 24 48 48 H 1.09004 * 109.47367 * 59.99784 * 27 25 24 49 49 H 1.09004 * 109.47464 * 180.02562 * 27 25 24 50 50 H 1.09006 * 109.47557 * 300.00168 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.2097 0.0000 4 6 3.5686 1.2015 0.0005 5 7 4.2582 0.0297 0.0005 6 6 5.7231 0.0517 0.0017 7 6 3.6103 -1.1508 0.0005 8 8 4.2429 -2.1948 0.0010 9 6 2.1989 -1.1800 0.0057 10 7 1.5145 -2.4038 0.0111 11 6 1.7188 -3.2858 1.0094 12 8 2.4247 -2.9838 1.9525 13 7 1.1409 -4.5025 0.9627 14 6 0.2901 -4.8660 -0.1732 15 6 1.1327 -5.5031 -1.2482 16 1 2.1956 -5.6245 -1.1002 17 6 0.5466 -5.9298 -2.4210 18 7 -0.7476 -5.7815 -2.6014 19 14 1.5907 -6.7201 -3.7532 20 1 1.6426 -8.1882 -3.5357 21 1 0.9934 -6.4375 -5.0830 22 1 2.9662 -6.1629 -3.6998 23 6 1.3636 -5.4613 2.0476 24 6 0.2895 -5.2749 3.1213 25 6 0.5217 -6.2769 4.2541 26 6 1.8478 -5.9624 4.9493 27 6 -0.6212 -6.1760 5.2663 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5139 0.8899 30 1 -0.3632 -0.5139 -0.8900 31 1 1.6821 2.1483 0.0004 32 1 4.1076 2.1374 0.0009 33 1 6.0709 1.0847 0.0019 34 1 6.0934 -0.4570 0.8918 35 1 6.0947 -0.4562 -0.8883 36 1 0.8938 -2.6155 -0.7037 37 1 -0.4732 -5.5711 0.1556 38 1 -0.1887 -3.9707 -0.5698 39 1 -1.1598 -6.0814 -3.4266 40 1 1.3102 -6.4758 1.6526 41 1 2.3476 -5.2931 2.4850 42 1 0.3429 -4.2605 3.5164 43 1 -0.6946 -5.4433 2.6838 44 1 0.5564 -7.2865 3.8448 45 1 1.8131 -4.9527 5.3586 46 1 2.0130 -6.6759 5.7566 47 1 2.6621 -6.0343 4.2283 48 1 -1.5661 -6.4000 4.7710 49 1 -0.4557 -6.8894 6.0736 50 1 -0.6561 -5.1663 5.6756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155495676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:54 Heat of formation + Delta-G solvation = -39.676728 kcal Electronic energy + Delta-G solvation = -30463.366196 eV Core-core repulsion = 26491.025044 eV Total energy + Delta-G solvation = -3972.341152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.20522 -39.24117 -36.75342 -36.72273 -35.57795 -34.54474 -32.83891 -32.45832 -29.98693 -29.24390 -28.28310 -26.93737 -26.80826 -25.96056 -23.71640 -23.03323 -22.23654 -21.42249 -19.69464 -19.31777 -17.82815 -17.29252 -16.96410 -16.43685 -16.08693 -15.71915 -15.18758 -14.90208 -14.50130 -14.38404 -14.19637 -14.10022 -13.52965 -13.39427 -13.18442 -12.96618 -12.92037 -12.77218 -12.59295 -12.34174 -12.22855 -12.01625 -11.93722 -11.64833 -11.60778 -11.39738 -11.36435 -10.97620 -10.87610 -10.70794 -10.62608 -10.39331 -10.19007 -9.97646 -9.89783 -9.63853 -9.53552 -9.22256 -8.69803 -8.51067 -7.61816 -7.27162 -6.12787 -4.19310 1.00861 2.11653 2.73654 3.27539 3.33964 3.41034 3.55147 3.86260 4.19720 4.38737 4.57077 4.66565 4.83241 4.97778 5.14916 5.17841 5.19876 5.24002 5.26468 5.28061 5.33784 5.55486 5.63867 5.75442 5.77195 5.81054 5.82636 5.93960 6.00721 6.08356 6.09164 6.12869 6.21551 6.23108 6.37784 6.44394 6.46589 6.50584 6.66055 6.73454 6.81196 6.86049 7.16657 7.18884 7.41033 7.51221 7.83830 7.94148 8.12625 8.39293 8.73268 8.97222 9.46846 9.56210 10.93081 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007065 B = 0.005008 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.225557 B = 5589.170469 C = 7886.473896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.031 4.031 3 C -0.208 4.208 4 C 0.109 3.891 5 N -0.504 5.504 6 C 0.070 3.930 7 C 0.515 3.485 8 O -0.517 6.517 9 C 0.069 3.931 10 N -0.670 5.670 11 C 0.718 3.282 12 O -0.602 6.602 13 N -0.612 5.612 14 C 0.242 3.758 15 C -0.533 4.533 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.139 3.861 24 C -0.128 4.128 25 C -0.094 4.094 26 C -0.146 4.146 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.144 0.856 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.414 0.586 37 H 0.038 0.962 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.049 0.951 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 13.493 7.480 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.037 4.037 3 C -0.232 4.232 4 C -0.017 4.017 5 N -0.218 5.218 6 C -0.072 4.072 7 C 0.312 3.688 8 O -0.395 6.395 9 C -0.031 4.031 10 N -0.323 5.323 11 C 0.421 3.579 12 O -0.481 6.481 13 N -0.346 5.346 14 C 0.122 3.878 15 C -0.571 4.571 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.015 3.985 24 C -0.167 4.167 25 C -0.113 4.113 26 C -0.204 4.204 27 C -0.201 4.201 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.161 0.839 32 H 0.175 0.825 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.255 0.745 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.950 12.851 8.010 15.650 hybrid contribution 0.178 -0.505 -1.373 1.474 sum 4.129 12.346 6.637 14.612 Atomic orbital electron populations 1.20749 0.90247 1.02693 1.03258 1.20181 0.96988 0.91587 0.94942 1.20330 0.92327 0.98035 1.12529 1.21790 0.93447 0.89363 0.97144 1.45355 1.08720 1.06559 1.61212 1.22020 0.77636 1.03159 1.04362 1.17200 0.88892 0.82851 0.79832 1.91000 1.68208 1.30180 1.50096 1.17726 0.89793 0.86203 1.09341 1.42302 1.46901 1.15455 1.27656 1.15682 0.79732 0.80618 0.81881 1.90804 1.43563 1.78422 1.35332 1.47292 1.51590 1.11984 1.23746 1.19282 0.89770 0.96090 0.82678 1.21596 0.95272 1.39766 1.00508 0.91953 1.24930 0.94965 0.95684 0.98248 1.69920 1.09609 1.47152 1.26660 0.86531 0.80693 0.79708 0.80824 1.20512 1.21138 1.19766 1.21198 0.98451 0.92251 0.86586 1.22029 0.99832 0.99198 0.95618 1.21046 0.95079 0.99604 0.95550 1.21868 0.97358 1.01071 1.00074 1.21819 0.98295 1.01327 0.98682 0.91338 0.90642 0.90566 0.83854 0.82494 0.89746 0.90377 0.90466 0.74528 0.94384 0.95542 0.92645 0.90758 0.90885 0.92057 0.91984 0.91221 0.92843 0.93426 0.92198 0.92813 0.93151 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.54 36.01 0.34 -1.04 16 2 C -0.03 -0.44 5.90 -104.40 -0.62 -1.06 16 3 C -0.21 -2.25 9.65 -39.90 -0.39 -2.64 16 4 C 0.11 1.11 10.30 -16.78 -0.17 0.93 16 5 N -0.50 -7.12 2.99 -126.95 -0.38 -7.50 16 6 C 0.07 0.75 10.06 59.85 0.60 1.35 16 7 C 0.51 10.23 6.97 -15.20 -0.11 10.12 16 8 O -0.52 -12.62 15.59 -8.02 -0.13 -12.75 16 9 C 0.07 1.32 5.69 -83.43 -0.47 0.84 16 10 N -0.67 -14.36 4.45 -14.07 -0.06 -14.42 16 11 C 0.72 17.08 7.60 -86.92 -0.66 16.42 16 12 O -0.60 -15.56 14.89 -7.61 -0.11 -15.67 16 13 N -0.61 -14.06 2.46 -180.79 -0.44 -14.51 16 14 C 0.24 5.96 4.97 -5.19 -0.03 5.93 16 15 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 16 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.14 2.82 5.16 -4.04 -0.02 2.80 16 24 C -0.13 -2.19 5.01 -26.73 -0.13 -2.32 16 25 C -0.09 -1.33 2.92 -90.62 -0.26 -1.59 16 26 C -0.15 -2.03 8.95 37.16 0.33 -1.70 16 27 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 28 H 0.07 0.63 7.93 -51.93 -0.41 0.21 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.14 1.05 7.99 -52.49 -0.42 0.63 16 32 H 0.16 0.83 7.82 -52.49 -0.41 0.42 16 33 H 0.08 0.50 7.72 -51.93 -0.40 0.10 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.41 8.77 6.52 -40.82 -0.27 8.50 16 37 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 38 H 0.03 0.66 6.29 -51.93 -0.33 0.33 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 40 H 0.07 1.49 8.07 -51.93 -0.42 1.07 16 41 H 0.07 1.54 5.84 -51.93 -0.30 1.24 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 407.93 15.07 6.15 6.15 Total: -1.00 -35.97 407.93 -9.26 -45.23 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.34 Total: 7.70 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -1.66 Total: 13.38 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.15 Total: -60.59 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.24 Total: -28.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.97 -9.26 -45.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155495676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.555 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds