Wall clock time and date at job start Tue Mar 31 2020 19:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40218 * 120.37884 * 2 1 4 4 C 1.35255 * 120.03510 * 179.97438 * 3 2 1 5 5 N 1.35964 * 120.81806 * 0.02562 * 4 3 2 6 6 C 1.46505 * 119.61355 * 180.02562 * 5 4 3 7 7 C 1.34662 * 120.76939 * 359.97438 * 5 4 3 8 8 O 1.22067 * 120.03135 * 180.02562 * 7 5 4 9 9 C 1.36790 * 120.38522 * 179.72331 * 2 1 3 10 10 N 1.40217 * 120.39707 * 0.02562 * 9 2 1 11 11 C 1.34776 * 119.99877 * 238.40747 * 10 9 2 12 12 O 1.21607 * 120.00102 * 5.08442 * 11 10 9 13 13 N 1.34777 * 120.00346 * 185.08664 * 11 10 9 14 14 C 1.46501 * 119.99745 * 359.97438 * 13 11 10 15 15 C 1.50707 * 109.46819 * 90.00101 * 14 13 11 16 16 H 1.07999 * 120.00037 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99478 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00566 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99677 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47183 * 89.99658 * 19 17 15 21 21 H 1.48499 * 109.47018 * 209.99639 * 19 17 15 22 22 H 1.48502 * 109.47047 * 329.99573 * 19 17 15 23 23 C 1.46495 * 120.00140 * 179.97438 * 13 11 10 24 24 C 1.53008 * 109.46905 * 89.99959 * 23 13 11 25 25 C 1.53004 * 109.46860 * 179.97438 * 24 23 13 26 26 C 1.52997 * 109.46980 * 64.99989 * 25 24 23 27 27 C 1.52996 * 109.46913 * 185.00120 * 25 24 23 28 28 H 1.08993 * 109.46995 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46782 * 239.99646 * 1 2 3 30 30 H 1.09001 * 109.46361 * 119.99954 * 1 2 3 31 31 H 1.07994 * 119.98393 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.59494 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47038 * 359.97438 * 6 5 4 34 34 H 1.09002 * 109.46889 * 119.99886 * 6 5 4 35 35 H 1.09000 * 109.46850 * 240.00140 * 6 5 4 36 36 H 0.96998 * 120.00064 * 58.40015 * 10 9 2 37 37 H 1.08994 * 109.47109 * 209.99829 * 14 13 11 38 38 H 1.09005 * 109.47145 * 330.00358 * 14 13 11 39 39 H 0.96995 * 120.00187 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47420 * 209.99820 * 23 13 11 41 41 H 1.09000 * 109.47337 * 330.00022 * 23 13 11 42 42 H 1.08994 * 109.47279 * 299.99765 * 24 23 13 43 43 H 1.09005 * 109.46699 * 60.00156 * 24 23 13 44 44 H 1.09004 * 109.47087 * 304.99996 * 25 24 23 45 45 H 1.09004 * 109.47205 * 60.00079 * 26 25 24 46 46 H 1.09004 * 109.46836 * 179.97438 * 26 25 24 47 47 H 1.08994 * 109.47833 * 299.99653 * 26 25 24 48 48 H 1.09004 * 109.47367 * 59.99784 * 27 25 24 49 49 H 1.09004 * 109.47464 * 180.02562 * 27 25 24 50 50 H 1.09006 * 109.47557 * 300.00168 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.2097 0.0000 4 6 3.5686 1.2015 0.0005 5 7 4.2582 0.0297 0.0005 6 6 5.7231 0.0517 0.0017 7 6 3.6103 -1.1508 0.0005 8 8 4.2429 -2.1948 0.0010 9 6 2.1989 -1.1800 0.0057 10 7 1.5145 -2.4038 0.0111 11 6 1.7188 -3.2858 1.0094 12 8 2.4247 -2.9838 1.9525 13 7 1.1409 -4.5025 0.9627 14 6 0.2901 -4.8660 -0.1732 15 6 1.1327 -5.5031 -1.2482 16 1 2.1956 -5.6245 -1.1002 17 6 0.5466 -5.9298 -2.4210 18 7 -0.7476 -5.7815 -2.6014 19 14 1.5907 -6.7201 -3.7532 20 1 1.6426 -8.1882 -3.5357 21 1 0.9934 -6.4375 -5.0830 22 1 2.9662 -6.1629 -3.6998 23 6 1.3636 -5.4613 2.0476 24 6 0.2895 -5.2749 3.1213 25 6 0.5217 -6.2769 4.2541 26 6 1.8478 -5.9624 4.9493 27 6 -0.6212 -6.1760 5.2663 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5139 0.8899 30 1 -0.3632 -0.5139 -0.8900 31 1 1.6821 2.1483 0.0004 32 1 4.1076 2.1374 0.0009 33 1 6.0709 1.0847 0.0019 34 1 6.0934 -0.4570 0.8918 35 1 6.0947 -0.4562 -0.8883 36 1 0.8938 -2.6155 -0.7037 37 1 -0.4732 -5.5711 0.1556 38 1 -0.1887 -3.9707 -0.5698 39 1 -1.1598 -6.0814 -3.4266 40 1 1.3102 -6.4758 1.6526 41 1 2.3476 -5.2931 2.4850 42 1 0.3429 -4.2605 3.5164 43 1 -0.6946 -5.4433 2.6838 44 1 0.5564 -7.2865 3.8448 45 1 1.8131 -4.9527 5.3586 46 1 2.0130 -6.6759 5.7566 47 1 2.6621 -6.0343 4.2283 48 1 -1.5661 -6.4000 4.7710 49 1 -0.4557 -6.8894 6.0736 50 1 -0.6561 -5.1663 5.6756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155495676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:53 Heat of formation + Delta-G solvation = -61.979253 kcal Electronic energy + Delta-G solvation = -30464.333306 eV Core-core repulsion = 26491.025044 eV Total energy + Delta-G solvation = -3973.308262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.46103 -40.91698 -38.12400 -38.05074 -36.88432 -36.38775 -34.51674 -34.21539 -31.03442 -30.65429 -29.71474 -28.65649 -28.02405 -26.99233 -25.06078 -25.01363 -23.60970 -22.58895 -21.04358 -20.86559 -19.33163 -18.76578 -18.57401 -18.20921 -17.45694 -16.92544 -16.72811 -16.42060 -16.20731 -15.93967 -15.70130 -15.13401 -14.97110 -14.67127 -14.47185 -14.34741 -14.31188 -14.03496 -13.87550 -13.75908 -13.56439 -13.44035 -13.14439 -13.01240 -12.90217 -12.77767 -12.65940 -12.60508 -12.46497 -12.30379 -12.10231 -11.98290 -11.61963 -11.54937 -11.49077 -11.40210 -11.12386 -10.79514 -10.62211 -10.10715 -9.40071 -8.61734 -8.24480 -6.39370 -0.12173 0.98240 1.33560 1.34901 1.46144 1.58816 2.02539 2.32744 2.38911 2.71040 3.02596 3.14557 3.67701 3.88722 3.92007 3.96425 4.03922 4.07033 4.18826 4.29541 4.38229 4.42497 4.54057 4.57584 4.67398 4.73005 4.75076 4.75502 4.79673 4.86820 4.90858 4.93574 5.00368 5.05456 5.08418 5.11567 5.15056 5.21883 5.30913 5.38655 5.45327 5.48906 5.59953 5.66048 5.76975 5.90239 6.01920 6.11391 6.20601 6.63713 7.05210 7.08627 7.33313 7.77095 8.79314 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007065 B = 0.005008 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.225557 B = 5589.170469 C = 7886.473896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.006 3.994 3 C -0.218 4.218 4 C 0.134 3.866 5 N -0.501 5.501 6 C 0.064 3.936 7 C 0.494 3.506 8 O -0.594 6.594 9 C -0.018 4.018 10 N -0.666 5.666 11 C 0.711 3.289 12 O -0.631 6.631 13 N -0.619 5.619 14 C 0.261 3.739 15 C -0.548 4.548 16 H 0.034 0.966 17 C 0.029 3.971 18 N -0.912 5.912 19 Si 0.952 3.048 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.287 1.287 23 C 0.137 3.863 24 C -0.113 4.113 25 C -0.091 4.091 26 C -0.143 4.143 27 C -0.138 4.138 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.196 0.804 32 H 0.227 0.773 33 H 0.147 0.853 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.407 0.593 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.270 0.730 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.039 0.961 48 H 0.056 0.944 49 H 0.071 0.929 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 16.752 7.447 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.000 4.000 3 C -0.241 4.241 4 C 0.009 3.991 5 N -0.212 5.212 6 C -0.077 4.077 7 C 0.295 3.705 8 O -0.479 6.479 9 C -0.115 4.115 10 N -0.317 5.317 11 C 0.414 3.586 12 O -0.513 6.513 13 N -0.353 5.353 14 C 0.139 3.861 15 C -0.587 4.587 16 H 0.053 0.947 17 C -0.172 4.172 18 N -0.550 5.550 19 Si 0.777 3.223 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.213 1.213 23 C 0.014 3.986 24 C -0.152 4.152 25 C -0.110 4.110 26 C -0.200 4.200 27 C -0.196 4.196 28 H 0.131 0.869 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.213 0.787 32 H 0.243 0.757 33 H 0.165 0.835 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.247 0.753 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.550 16.183 7.972 18.386 hybrid contribution 0.339 -1.249 -1.378 1.890 sum 3.889 14.934 6.594 16.782 Atomic orbital electron populations 1.20873 0.88839 1.05208 1.02277 1.20729 0.98250 0.91462 0.89592 1.20981 0.92904 0.98196 1.12013 1.22989 0.93924 0.89846 0.92389 1.45505 1.10355 1.06352 1.58956 1.22315 0.75588 1.06730 1.03036 1.17509 0.89411 0.83704 0.79859 1.90929 1.69464 1.32910 1.54612 1.18066 0.90117 0.86580 1.16781 1.42111 1.46796 1.16354 1.26466 1.15914 0.79448 0.80998 0.82258 1.90740 1.44876 1.79062 1.36634 1.47355 1.51507 1.12447 1.23975 1.18939 0.89238 0.95321 0.82553 1.21614 0.94147 1.40891 1.02022 0.94737 1.25526 0.96052 0.95879 0.99748 1.69971 1.10410 1.47273 1.27396 0.85664 0.78437 0.79149 0.79031 1.19488 1.19475 1.21301 1.21309 0.98965 0.91532 0.86814 1.21885 0.98315 0.99391 0.95571 1.21057 0.96242 0.98696 0.95019 1.21834 0.96508 1.01427 1.00273 1.21772 0.97273 1.02007 0.98526 0.86931 0.92109 0.91025 0.78691 0.75681 0.83473 0.92192 0.91619 0.75342 0.95315 0.95811 0.92045 0.91083 0.92424 0.93558 0.92131 0.90633 0.93561 0.90818 0.94174 0.92475 0.91027 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.54 71.24 0.68 -1.97 16 2 C 0.01 0.17 5.90 -19.72 -0.12 0.06 16 3 C -0.22 -3.68 9.65 22.06 0.21 -3.47 16 4 C 0.13 2.06 10.30 83.36 0.86 2.92 16 5 N -0.50 -13.43 2.99 -673.68 -2.01 -15.45 16 6 C 0.06 1.26 10.06 127.77 1.28 2.54 16 7 C 0.49 20.62 6.97 84.98 0.59 21.22 16 8 O -0.59 -31.69 15.59 6.78 0.11 -31.58 16 9 C -0.02 -0.71 5.69 38.18 0.22 -0.49 16 10 N -0.67 -30.79 4.45 -316.69 -1.41 -32.20 16 11 C 0.71 36.68 7.60 179.05 1.36 38.04 16 12 O -0.63 -35.37 14.89 8.26 0.12 -35.25 16 13 N -0.62 -30.75 2.46 -844.16 -2.07 -32.82 16 14 C 0.26 13.64 4.97 85.63 0.43 14.06 16 15 C -0.55 -31.64 9.39 25.60 0.24 -31.40 16 16 H 0.03 2.15 7.81 -2.91 -0.02 2.13 16 17 C 0.03 1.62 5.46 84.65 0.46 2.08 16 18 N -0.91 -51.36 13.29 21.45 0.28 -51.08 16 19 Si 0.95 45.22 29.54 68.60 2.03 47.25 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 23 C 0.14 6.01 5.16 86.38 0.45 6.45 16 24 C -0.11 -4.07 5.01 30.60 0.15 -3.92 16 25 C -0.09 -2.60 2.92 -10.79 -0.03 -2.63 16 26 C -0.14 -4.05 8.95 71.98 0.64 -3.41 16 27 C -0.14 -3.22 9.19 71.98 0.66 -2.56 16 28 H 0.11 1.57 7.93 -2.39 -0.02 1.55 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.20 1.35 7.99 -2.91 -0.02 1.33 16 32 H 0.23 0.41 7.82 -2.91 -0.02 0.39 16 33 H 0.15 0.98 7.72 -2.39 -0.02 0.96 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.41 18.75 6.52 -92.71 -0.60 18.15 16 37 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 38 H 0.02 1.26 6.29 -2.38 -0.02 1.24 16 39 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.07 3.08 8.07 -2.39 -0.02 3.06 16 41 H 0.06 2.68 5.84 -2.39 -0.01 2.67 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 44 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.04 1.27 6.57 -2.39 -0.02 1.26 16 48 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 49 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -88.89 407.93 5.46 -83.43 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.32 Total: 30.18 kcal Atomic # 6 Polarization: 29.44 SS G_CDS: 8.09 Total: 37.53 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -5.21 Total: -131.55 kcal Atomic # 8 Polarization: -67.06 SS G_CDS: 0.23 Total: -66.83 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -88.89 5.46 -83.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155495676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.446 kcal (2) G-P(sol) polarization free energy of solvation -88.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds