Wall clock time and date at job start Tue Mar 31 2020 20:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30837 * 125.89841 * 2 1 4 4 N 1.40085 * 108.20397 * 180.25579 * 3 2 1 5 5 C 1.46496 * 126.03512 * 179.69565 * 4 3 2 6 6 C 1.50696 * 109.47247 * 270.02440 * 5 4 3 7 7 H 1.07998 * 120.00125 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00174 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99992 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47141 * 59.99452 * 10 8 6 12 12 H 1.48493 * 109.47374 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47234 * 300.00020 * 10 8 6 14 14 C 1.34943 * 107.92549 * 359.71408 * 4 3 2 15 15 C 1.50697 * 126.12948 * 180.02562 * 14 4 3 16 16 C 1.35319 * 107.74653 * 0.02562 * 14 4 3 17 17 C 1.50702 * 126.03823 * 180.02562 * 16 14 4 18 18 C 1.52999 * 109.47522 * 89.99576 * 17 16 14 19 19 C 1.50698 * 109.47004 * 179.97438 * 18 17 16 20 20 O 1.21283 * 120.00472 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.46499 * 119.99665 * 179.72653 * 21 19 18 23 23 C 1.53003 * 110.46016 * 302.88353 * 22 21 19 24 24 C 1.54509 * 110.51178 * 180.27809 * 22 21 19 25 25 C 1.54473 * 104.06588 * 241.35507 * 24 22 21 26 26 O 1.44427 * 104.80007 * 23.97775 * 25 24 22 27 27 C 1.44421 * 105.27868 * 319.48830 * 26 25 24 28 28 H 1.08997 * 109.47391 * 270.21643 * 1 2 3 29 29 H 1.08994 * 109.46981 * 30.21471 * 1 2 3 30 30 H 1.09004 * 109.46925 * 150.21520 * 1 2 3 31 31 H 1.09001 * 109.47702 * 30.02437 * 5 4 3 32 32 H 1.08999 * 109.47040 * 150.02375 * 5 4 3 33 33 H 0.97001 * 120.00383 * 180.02562 * 9 8 6 34 34 H 1.09009 * 109.47293 * 269.97659 * 15 14 4 35 35 H 1.08998 * 109.46933 * 29.97590 * 15 14 4 36 36 H 1.08992 * 109.47832 * 149.97616 * 15 14 4 37 37 H 1.09000 * 109.47047 * 329.98881 * 17 16 14 38 38 H 1.09007 * 109.46879 * 209.99894 * 17 16 14 39 39 H 1.09003 * 109.46690 * 59.99942 * 18 17 16 40 40 H 1.08993 * 109.46773 * 300.00278 * 18 17 16 41 41 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 42 42 H 1.08998 * 109.47096 * 59.29678 * 23 22 21 43 43 H 1.09000 * 109.47465 * 179.29874 * 23 22 21 44 44 H 1.09007 * 109.46934 * 299.29984 * 23 22 21 45 45 H 1.09002 * 110.51252 * 0.02562 * 24 22 21 46 46 H 1.09002 * 110.50977 * 122.57307 * 24 22 21 47 47 H 1.08999 * 110.37539 * 142.80951 * 25 24 22 48 48 H 1.09003 * 110.37711 * 265.14774 * 25 24 22 49 49 H 1.09007 * 110.37073 * 281.68480 * 27 26 25 50 50 H 1.08994 * 110.37762 * 159.34369 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0059 5 6 4.7899 1.5008 -0.0142 6 6 5.1871 1.7950 -1.4378 7 1 4.6166 1.3784 -2.2547 8 6 6.2789 2.5960 -1.6975 9 7 6.9734 3.1036 -0.7027 10 14 6.7717 2.9601 -3.4621 11 1 5.6517 3.6434 -4.1579 12 1 7.9688 3.8386 -3.4706 13 1 7.0858 1.6880 -4.1609 14 6 3.6143 -0.7153 -0.0031 15 6 4.8350 -1.5989 -0.0069 16 6 2.3272 -1.1330 0.0038 17 6 1.8600 -2.5658 0.0096 18 6 1.7085 -3.0471 1.4540 19 6 1.2407 -4.4796 1.4597 20 8 1.0480 -5.0588 0.4117 21 7 1.0376 -5.1175 2.6295 22 6 0.5771 -6.5082 2.6350 23 6 -0.7396 -6.6387 1.8667 24 6 0.4110 -7.0177 4.0842 25 6 1.4068 -8.1943 4.1849 26 8 2.3975 -7.9272 3.1684 27 6 1.6537 -7.4372 2.0316 28 1 -0.3634 0.0039 1.0276 29 1 -0.3633 0.8880 -0.5171 30 1 -0.3633 -0.8919 -0.5105 31 1 4.5592 2.4344 0.4989 32 1 5.6121 0.9993 0.4962 33 1 7.7413 3.6675 -0.8853 34 1 5.1243 -1.8145 -1.0356 35 1 5.6536 -1.0897 0.5016 36 1 4.6102 -2.5316 0.5103 37 1 2.5911 -3.1884 -0.5061 38 1 0.8988 -2.6366 -0.4997 39 1 0.9774 -2.4244 1.9696 40 1 2.6696 -2.9762 1.9632 41 1 1.1921 -4.6544 3.4677 42 1 -0.5948 -6.3067 0.8387 43 1 -1.0607 -7.6803 1.8703 44 1 -1.5013 -6.0219 2.3438 45 1 0.6711 -6.2347 4.7965 46 1 -0.6091 -7.3625 4.2532 47 1 1.8710 -8.2153 5.1709 48 1 0.9007 -9.1383 3.9828 49 1 1.1853 -8.2651 1.4992 50 1 2.3074 -6.8767 1.3634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157592286.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:02 Heat of formation + Delta-G solvation = -29.584154 kcal Electronic energy + Delta-G solvation = -29113.631236 eV Core-core repulsion = 25141.727732 eV Total energy + Delta-G solvation = -3971.903505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.87486 -40.52389 -38.87477 -35.23438 -34.36979 -33.40189 -32.48234 -31.94873 -30.34317 -29.75900 -28.95725 -26.83930 -26.51081 -25.87004 -24.13406 -23.29205 -22.24160 -20.84909 -19.92489 -18.79780 -18.62682 -17.49376 -16.76313 -16.64582 -16.38737 -15.85010 -15.61646 -15.32507 -14.91685 -14.47898 -14.31715 -13.95477 -13.64941 -13.42817 -13.18083 -13.04762 -12.93554 -12.77772 -12.51168 -12.48467 -12.35810 -12.27528 -12.01137 -11.97654 -11.78673 -11.64252 -11.60807 -11.33066 -11.24848 -11.14134 -10.98248 -10.78449 -10.70570 -10.25488 -10.23153 -9.79390 -9.72241 -9.58617 -9.25214 -8.64218 -8.17774 -7.46913 -6.26160 -4.33520 2.56154 2.74760 2.92594 3.23377 3.27090 3.31167 3.40497 3.61028 3.62092 3.93965 4.29825 4.37942 4.50085 4.59166 4.74642 4.86886 5.07435 5.16055 5.19693 5.22218 5.24449 5.28995 5.33124 5.34798 5.37763 5.41969 5.49732 5.63037 5.65968 5.77109 5.82651 5.93310 5.94645 5.98698 6.03549 6.07021 6.24267 6.26705 6.37918 6.41799 6.46900 6.55572 6.86351 7.03321 7.12234 7.31706 7.52097 7.66415 7.88662 8.06110 8.12140 8.67112 8.75650 9.32841 10.81408 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.002233 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.369176 B =12535.212809 C =13181.939522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.050 3.950 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.536 4.536 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.269 4.269 17 C -0.009 4.009 18 C -0.134 4.134 19 C 0.516 3.484 20 O -0.536 6.536 21 N -0.724 5.724 22 C 0.144 3.856 23 C -0.160 4.160 24 C -0.158 4.158 25 C 0.044 3.956 26 O -0.373 6.373 27 C 0.043 3.957 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.268 0.732 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.401 0.599 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.068 0.932 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.626 -20.892 11.167 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.140 3.860 6 C -0.574 4.574 7 H 0.081 0.919 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.037 4.037 15 C -0.144 4.144 16 C -0.281 4.281 17 C -0.048 4.048 18 C -0.174 4.174 19 C 0.304 3.696 20 O -0.412 6.412 21 N -0.378 5.378 22 C 0.057 3.943 23 C -0.218 4.218 24 C -0.196 4.196 25 C -0.033 4.033 26 O -0.291 6.291 27 C -0.035 4.035 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.236 0.764 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.183 -19.800 10.472 25.991 hybrid contribution 0.269 -0.163 -0.411 0.517 sum -12.915 -19.963 10.061 25.818 Atomic orbital electron populations 1.20021 0.88088 1.02406 1.01759 1.21938 0.96090 0.90788 1.02594 1.77273 0.87508 1.22681 1.24675 1.49243 1.05774 1.04218 1.51217 1.19644 0.77978 0.89527 0.98896 1.21263 1.13024 1.31819 0.91311 0.91868 1.24926 0.95685 0.95004 0.98163 1.69905 1.18922 1.32937 1.31246 0.86411 0.78007 0.78487 0.83770 1.19953 1.20940 1.19926 1.20780 0.96133 0.85669 1.01158 1.20350 0.93759 0.97146 1.03182 1.19348 0.91332 0.95099 1.22368 1.19379 1.01565 0.90878 0.93021 1.21762 1.03042 0.91163 1.01448 1.21061 0.76146 0.89230 0.83141 1.90652 1.50739 1.68275 1.31573 1.46230 1.69703 1.12613 1.09235 1.21627 0.94864 0.82518 0.95267 1.22184 0.94683 1.02008 1.02950 1.23296 1.01365 0.99373 0.95568 1.23409 0.89806 0.96780 0.93332 1.89185 1.29981 1.85562 1.24407 1.23858 0.94111 0.96267 0.89260 0.91656 0.91597 0.91253 0.93099 0.93110 0.92202 0.90449 0.90947 0.91081 0.91403 0.91293 0.89027 0.89039 0.76387 0.89451 0.91769 0.92175 0.89864 0.89220 0.88847 0.92028 0.91358 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.26 36.01 0.37 -0.53 16 2 C 0.05 0.95 7.22 -82.40 -0.59 0.36 16 3 N -0.30 -6.84 12.58 33.67 0.42 -6.42 16 4 N -0.33 -7.60 3.60 -58.32 -0.21 -7.81 16 5 C 0.26 6.62 6.00 -5.20 -0.03 6.59 16 6 C -0.54 -14.88 9.39 -34.44 -0.32 -15.20 16 7 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 10 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.09 1.87 6.93 -82.27 -0.57 1.30 16 15 C -0.09 -1.42 9.72 36.00 0.35 -1.07 16 16 C -0.27 -4.77 5.35 -105.05 -0.56 -5.33 16 17 C -0.01 -0.13 4.41 -27.88 -0.12 -0.26 16 18 C -0.13 -1.47 5.68 -27.88 -0.16 -1.63 16 19 C 0.52 5.67 7.05 -10.99 -0.08 5.59 16 20 O -0.54 -7.45 12.90 5.55 0.07 -7.38 16 21 N -0.72 -6.02 5.16 -46.16 -0.24 -6.26 16 22 C 0.14 1.14 1.02 -130.25 -0.13 1.00 16 23 C -0.16 -1.25 8.19 37.16 0.30 -0.95 16 24 C -0.16 -0.86 6.52 -25.17 -0.16 -1.02 16 25 C 0.04 0.28 7.63 37.93 0.29 0.57 16 26 O -0.37 -3.80 11.65 -35.23 -0.41 -4.21 16 27 C 0.04 0.41 6.51 37.93 0.25 0.66 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.85 7.25 -51.93 -0.38 0.47 16 31 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.05 1.29 7.05 -51.93 -0.37 0.93 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 35 H 0.07 1.23 7.08 -51.93 -0.37 0.86 16 36 H 0.07 0.95 7.77 -51.93 -0.40 0.55 16 37 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 38 H 0.07 0.97 7.21 -51.93 -0.37 0.60 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.40 2.46 8.14 -40.82 -0.33 2.13 16 42 H 0.09 0.91 6.04 -51.93 -0.31 0.60 16 43 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.38 7.53 -51.93 -0.39 -0.01 16 46 H 0.09 0.36 7.73 -51.93 -0.40 -0.05 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.07 0.59 7.86 -51.92 -0.41 0.18 16 50 H 0.10 1.19 6.83 -51.93 -0.35 0.84 16 LS Contribution 403.09 15.07 6.07 6.07 Total: -1.00 -32.87 403.09 -8.11 -40.98 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.26 Total: 1.45 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.27 Total: -8.23 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.71 Total: -44.97 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.34 Total: -11.59 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.87 -8.11 -40.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157592286.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.392 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds