Wall clock time and date at job start Tue Mar 31 2020 20:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30837 * 125.89841 * 2 1 4 4 N 1.40085 * 108.20397 * 180.25579 * 3 2 1 5 5 C 1.46496 * 126.03512 * 179.69565 * 4 3 2 6 6 C 1.50696 * 109.47247 * 270.02440 * 5 4 3 7 7 H 1.07998 * 120.00125 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00174 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99992 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47141 * 59.99452 * 10 8 6 12 12 H 1.48493 * 109.47374 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47234 * 300.00020 * 10 8 6 14 14 C 1.34943 * 107.92549 * 359.71408 * 4 3 2 15 15 C 1.50697 * 126.12948 * 180.02562 * 14 4 3 16 16 C 1.35319 * 107.74653 * 0.02562 * 14 4 3 17 17 C 1.50702 * 126.03823 * 180.02562 * 16 14 4 18 18 C 1.52999 * 109.47522 * 89.99576 * 17 16 14 19 19 C 1.50698 * 109.47004 * 179.97438 * 18 17 16 20 20 O 1.21283 * 120.00472 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.46499 * 119.99665 * 179.72653 * 21 19 18 23 23 C 1.53003 * 110.46016 * 302.88353 * 22 21 19 24 24 C 1.54509 * 110.51178 * 180.27809 * 22 21 19 25 25 C 1.54473 * 104.06588 * 241.35507 * 24 22 21 26 26 O 1.44427 * 104.80007 * 23.97775 * 25 24 22 27 27 C 1.44421 * 105.27868 * 319.48830 * 26 25 24 28 28 H 1.08997 * 109.47391 * 270.21643 * 1 2 3 29 29 H 1.08994 * 109.46981 * 30.21471 * 1 2 3 30 30 H 1.09004 * 109.46925 * 150.21520 * 1 2 3 31 31 H 1.09001 * 109.47702 * 30.02437 * 5 4 3 32 32 H 1.08999 * 109.47040 * 150.02375 * 5 4 3 33 33 H 0.97001 * 120.00383 * 180.02562 * 9 8 6 34 34 H 1.09009 * 109.47293 * 269.97659 * 15 14 4 35 35 H 1.08998 * 109.46933 * 29.97590 * 15 14 4 36 36 H 1.08992 * 109.47832 * 149.97616 * 15 14 4 37 37 H 1.09000 * 109.47047 * 329.98881 * 17 16 14 38 38 H 1.09007 * 109.46879 * 209.99894 * 17 16 14 39 39 H 1.09003 * 109.46690 * 59.99942 * 18 17 16 40 40 H 1.08993 * 109.46773 * 300.00278 * 18 17 16 41 41 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 42 42 H 1.08998 * 109.47096 * 59.29678 * 23 22 21 43 43 H 1.09000 * 109.47465 * 179.29874 * 23 22 21 44 44 H 1.09007 * 109.46934 * 299.29984 * 23 22 21 45 45 H 1.09002 * 110.51252 * 0.02562 * 24 22 21 46 46 H 1.09002 * 110.50977 * 122.57307 * 24 22 21 47 47 H 1.08999 * 110.37539 * 142.80951 * 25 24 22 48 48 H 1.09003 * 110.37711 * 265.14774 * 25 24 22 49 49 H 1.09007 * 110.37073 * 281.68480 * 27 26 25 50 50 H 1.08994 * 110.37762 * 159.34369 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0059 5 6 4.7899 1.5008 -0.0142 6 6 5.1871 1.7950 -1.4378 7 1 4.6166 1.3784 -2.2547 8 6 6.2789 2.5960 -1.6975 9 7 6.9734 3.1036 -0.7027 10 14 6.7717 2.9601 -3.4621 11 1 5.6517 3.6434 -4.1579 12 1 7.9688 3.8386 -3.4706 13 1 7.0858 1.6880 -4.1609 14 6 3.6143 -0.7153 -0.0031 15 6 4.8350 -1.5989 -0.0069 16 6 2.3272 -1.1330 0.0038 17 6 1.8600 -2.5658 0.0096 18 6 1.7085 -3.0471 1.4540 19 6 1.2407 -4.4796 1.4597 20 8 1.0480 -5.0588 0.4117 21 7 1.0376 -5.1175 2.6295 22 6 0.5771 -6.5082 2.6350 23 6 -0.7396 -6.6387 1.8667 24 6 0.4110 -7.0177 4.0842 25 6 1.4068 -8.1943 4.1849 26 8 2.3975 -7.9272 3.1684 27 6 1.6537 -7.4372 2.0316 28 1 -0.3634 0.0039 1.0276 29 1 -0.3633 0.8880 -0.5171 30 1 -0.3633 -0.8919 -0.5105 31 1 4.5592 2.4344 0.4989 32 1 5.6121 0.9993 0.4962 33 1 7.7413 3.6675 -0.8853 34 1 5.1243 -1.8145 -1.0356 35 1 5.6536 -1.0897 0.5016 36 1 4.6102 -2.5316 0.5103 37 1 2.5911 -3.1884 -0.5061 38 1 0.8988 -2.6366 -0.4997 39 1 0.9774 -2.4244 1.9696 40 1 2.6696 -2.9762 1.9632 41 1 1.1921 -4.6544 3.4677 42 1 -0.5948 -6.3067 0.8387 43 1 -1.0607 -7.6803 1.8703 44 1 -1.5013 -6.0219 2.3438 45 1 0.6711 -6.2347 4.7965 46 1 -0.6091 -7.3625 4.2532 47 1 1.8710 -8.2153 5.1709 48 1 0.9007 -9.1383 3.9828 49 1 1.1853 -8.2651 1.4992 50 1 2.3074 -6.8767 1.3634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157592286.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:01 Heat of formation + Delta-G solvation = -51.459503 kcal Electronic energy + Delta-G solvation = -29114.579823 eV Core-core repulsion = 25141.727732 eV Total energy + Delta-G solvation = -3972.852091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.16094 -41.49154 -39.65510 -36.17142 -35.86715 -34.83463 -34.19561 -32.75772 -31.53864 -30.59756 -30.35369 -28.08414 -27.61745 -27.23277 -25.45157 -24.22684 -23.62153 -21.60550 -20.67510 -20.30264 -20.12633 -18.82754 -18.22963 -17.55876 -17.19353 -16.98082 -16.50609 -16.34265 -16.25159 -16.00785 -15.48997 -15.00516 -14.79390 -14.57224 -14.32495 -14.18118 -14.01139 -13.93371 -13.65902 -13.59479 -13.39393 -13.30840 -13.24384 -13.06680 -12.92946 -12.84193 -12.71560 -12.62354 -12.57773 -12.48527 -12.23610 -12.21408 -11.84678 -11.73218 -11.64532 -11.14503 -10.86646 -10.75919 -10.60157 -9.97884 -9.83883 -9.01922 -8.35521 -6.53395 1.17431 1.35427 1.36918 1.46045 1.72687 1.88640 1.94772 2.28522 2.32511 2.93798 3.03334 3.39271 3.79067 3.81719 3.92048 3.98028 4.01190 4.16493 4.24646 4.27499 4.31360 4.36750 4.51782 4.57894 4.64969 4.71360 4.72589 4.75267 4.79381 4.81446 4.85356 4.86171 4.87382 4.91720 4.94733 4.97928 5.03738 5.07080 5.14303 5.31117 5.35163 5.45676 5.49650 5.56292 5.61469 5.79584 5.83036 6.06448 6.31551 6.61443 6.63057 7.11966 7.17874 7.34555 8.70264 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.002233 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.369176 B =12535.212809 C =13181.939522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 N -0.351 5.351 4 N -0.356 5.356 5 C 0.276 3.724 6 C -0.554 4.554 7 H 0.047 0.953 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.970 3.030 11 H -0.276 1.276 12 H -0.271 1.271 13 H -0.265 1.265 14 C 0.077 3.923 15 C -0.082 4.082 16 C -0.257 4.257 17 C -0.003 4.003 18 C -0.126 4.126 19 C 0.519 3.481 20 O -0.568 6.568 21 N -0.712 5.712 22 C 0.141 3.859 23 C -0.156 4.156 24 C -0.148 4.148 25 C 0.036 3.964 26 O -0.400 6.400 27 C 0.042 3.958 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.019 0.981 32 H 0.046 0.954 33 H 0.274 0.726 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.414 0.586 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.150 -22.720 12.052 29.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.174 5.174 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.592 4.592 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.201 1.201 12 H -0.196 1.196 13 H -0.190 1.190 14 C -0.052 4.052 15 C -0.140 4.140 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.166 4.166 19 C 0.307 3.693 20 O -0.448 6.448 21 N -0.366 5.366 22 C 0.054 3.946 23 C -0.214 4.214 24 C -0.186 4.186 25 C -0.040 4.040 26 O -0.319 6.319 27 C -0.036 4.036 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.251 0.749 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.718 -21.653 11.403 28.557 hybrid contribution 0.660 0.309 -0.628 0.962 sum -14.058 -21.343 10.775 27.736 Atomic orbital electron populations 1.20211 0.84614 1.03450 1.03787 1.22795 0.98159 0.90162 0.99927 1.77208 0.87779 1.25064 1.27380 1.48997 1.05352 1.05155 1.54096 1.19111 0.79049 0.88719 0.97493 1.21397 1.13441 1.32521 0.91819 0.93514 1.25749 0.95387 0.94452 1.02342 1.69990 1.19251 1.33165 1.33206 0.85423 0.77830 0.78678 0.78672 1.20103 1.19556 1.19022 1.21445 0.98203 0.84675 1.00913 1.20426 0.92339 0.97881 1.03402 1.19733 0.90273 0.96622 1.20236 1.19348 1.01312 0.88225 0.95267 1.21632 1.04076 0.91553 0.99351 1.20965 0.75909 0.89089 0.83371 1.90656 1.52328 1.68902 1.32866 1.46129 1.68568 1.12856 1.09027 1.21723 0.94190 0.81707 0.96968 1.22130 0.94811 1.03173 1.01239 1.23290 1.02339 0.99214 0.93751 1.23665 0.89582 0.97767 0.92974 1.89153 1.31717 1.85794 1.25270 1.23794 0.94010 0.96625 0.89183 0.89009 0.91770 0.88962 0.96295 0.93596 0.91707 0.90641 0.91903 0.87673 0.92013 0.90906 0.87332 0.88299 0.74906 0.92262 0.90158 0.91202 0.88570 0.87085 0.87513 0.90823 0.90919 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.26 71.24 0.73 -0.89 16 2 C 0.05 2.02 7.22 43.10 0.31 2.33 16 3 N -0.35 -16.53 12.58 -47.38 -0.60 -17.12 16 4 N -0.36 -17.25 3.60 -338.42 -1.22 -18.46 16 5 C 0.28 14.93 6.00 85.63 0.51 15.44 16 6 C -0.55 -31.86 9.39 25.60 0.24 -31.62 16 7 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 8 C 0.02 1.21 5.46 84.66 0.46 1.68 16 9 N -0.92 -52.86 13.29 21.45 0.28 -52.58 16 10 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 14 C 0.08 3.09 6.93 41.41 0.29 3.38 16 15 C -0.08 -2.72 9.72 71.23 0.69 -2.03 16 16 C -0.26 -8.88 5.35 -20.14 -0.11 -8.98 16 17 C 0.00 -0.07 4.41 29.85 0.13 0.06 16 18 C -0.13 -2.48 5.68 29.85 0.17 -2.31 16 19 C 0.52 10.46 7.05 87.66 0.62 11.07 16 20 O -0.57 -15.32 12.90 -3.04 -0.04 -15.36 16 21 N -0.71 -10.20 5.16 -418.33 -2.16 -12.36 16 22 C 0.14 1.91 1.02 4.62 0.00 1.92 16 23 C -0.16 -2.10 8.19 71.98 0.59 -1.51 16 24 C -0.15 -1.10 6.52 31.61 0.21 -0.90 16 25 C 0.04 0.37 7.63 72.48 0.55 0.92 16 26 O -0.40 -7.66 11.65 -148.98 -1.74 -9.40 16 27 C 0.04 0.77 6.51 72.48 0.47 1.24 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.98 7.25 -2.38 -0.02 1.97 16 31 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 2.47 7.05 -2.39 -0.02 2.45 16 33 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 35 H 0.06 2.18 7.08 -2.39 -0.02 2.16 16 36 H 0.10 2.67 7.77 -2.39 -0.02 2.65 16 37 H 0.06 1.73 7.73 -2.39 -0.02 1.71 16 38 H 0.07 1.89 7.21 -2.38 -0.02 1.88 16 39 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.41 3.81 8.14 -92.71 -0.75 3.06 16 42 H 0.06 1.18 6.04 -2.39 -0.01 1.17 16 43 H 0.08 0.80 8.13 -2.39 -0.02 0.78 16 44 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.10 0.49 7.53 -2.39 -0.02 0.48 16 46 H 0.11 0.40 7.73 -2.39 -0.02 0.38 16 47 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.07 1.22 7.86 -2.38 -0.02 1.20 16 50 H 0.07 1.76 6.83 -2.39 -0.02 1.75 16 Total: -1.00 -74.52 403.09 2.63 -71.89 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.19 Total: 17.55 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 5.87 Total: -10.20 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -3.69 Total: -100.52 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -1.77 Total: -24.76 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -74.52 2.63 -71.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157592286.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.434 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds