Wall clock time and date at job start Tue Mar 31 2020 20:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30834 * 125.90144 * 2 1 4 4 N 1.40089 * 108.20716 * 180.25460 * 3 2 1 5 5 C 1.46495 * 126.03605 * 179.73936 * 4 3 2 6 6 C 1.50696 * 109.47221 * 269.97314 * 5 4 3 7 7 H 1.08006 * 119.99885 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00124 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00164 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99902 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47433 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47234 * 119.99821 * 10 8 6 13 13 H 1.48506 * 109.46784 * 239.99714 * 10 8 6 14 14 C 1.34947 * 107.92047 * 359.71875 * 4 3 2 15 15 C 1.50704 * 126.12301 * 179.97438 * 14 4 3 16 16 C 1.35316 * 107.74930 * 359.97438 * 14 4 3 17 17 C 1.50701 * 126.03736 * 179.97438 * 16 14 4 18 18 C 1.53003 * 109.46664 * 90.00700 * 17 16 14 19 19 C 1.50705 * 109.47019 * 179.97438 * 18 17 16 20 20 O 1.21288 * 119.99837 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00471 * 180.02562 * 19 18 17 22 22 C 1.46498 * 120.00401 * 179.97438 * 21 19 18 23 23 C 1.53001 * 110.56589 * 57.31859 * 22 21 19 24 24 C 1.54517 * 110.51118 * 179.97438 * 22 21 19 25 25 C 1.54479 * 104.06037 * 118.64396 * 24 22 21 26 26 O 1.44433 * 104.80518 * 336.02227 * 25 24 22 27 27 C 1.44422 * 105.27452 * 40.51075 * 26 25 24 28 28 H 1.08995 * 109.47208 * 270.21732 * 1 2 3 29 29 H 1.08998 * 109.46894 * 30.21708 * 1 2 3 30 30 H 1.09001 * 109.47215 * 150.20870 * 1 2 3 31 31 H 1.08993 * 109.47391 * 29.98094 * 5 4 3 32 32 H 1.09007 * 109.46690 * 149.97782 * 5 4 3 33 33 H 0.96999 * 120.00365 * 179.97438 * 9 8 6 34 34 H 1.08993 * 109.46995 * 270.02198 * 15 14 4 35 35 H 1.08993 * 109.47108 * 30.02228 * 15 14 4 36 36 H 1.09005 * 109.46876 * 150.02429 * 15 14 4 37 37 H 1.08992 * 109.47541 * 330.00149 * 17 16 14 38 38 H 1.09002 * 109.46965 * 210.00038 * 17 16 14 39 39 H 1.08997 * 109.47488 * 59.99953 * 18 17 16 40 40 H 1.09002 * 109.46888 * 299.99385 * 18 17 16 41 41 H 0.97007 * 119.99590 * 359.97438 * 21 19 18 42 42 H 1.08997 * 109.47126 * 182.67900 * 23 22 21 43 43 H 1.09003 * 109.46936 * 302.68128 * 23 22 21 44 44 H 1.09004 * 109.47311 * 62.67568 * 23 22 21 45 45 H 1.08991 * 110.51174 * 237.28796 * 24 22 21 46 46 H 1.08995 * 110.51247 * 0.02562 * 24 22 21 47 47 H 1.08997 * 110.37024 * 94.85221 * 25 24 22 48 48 H 1.08995 * 110.37315 * 217.18852 * 25 24 22 49 49 H 1.08995 * 110.37333 * 200.65712 * 27 26 25 50 50 H 1.09001 * 110.37394 * 78.31441 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0059 5 6 4.7899 1.5007 -0.0133 6 6 5.1882 1.7949 -1.4366 7 1 4.6183 1.3783 -2.2540 8 6 6.2802 2.5958 -1.6953 9 7 6.9739 3.1035 -0.7001 10 14 6.7735 2.9610 -3.4597 11 1 5.8376 2.2762 -4.3872 12 1 6.7208 4.4263 -3.6952 13 1 8.1546 2.4705 -3.6991 14 6 3.6142 -0.7154 -0.0031 15 6 4.8350 -1.5991 -0.0081 16 6 2.3271 -1.1330 0.0048 17 6 1.8599 -2.5658 0.0099 18 6 1.7098 -3.0481 1.4541 19 6 1.2420 -4.4807 1.4592 20 8 1.0473 -5.0588 0.4109 21 7 1.0390 -5.1192 2.6286 22 6 0.5837 -6.5116 2.6335 23 6 1.5583 -7.3986 1.8562 24 6 0.4240 -7.0239 4.0825 25 6 -1.0754 -7.3794 4.1918 26 8 -1.7203 -6.5737 3.1814 27 6 -0.8381 -6.6183 2.0388 28 1 -0.3633 0.0039 1.0276 29 1 -0.3633 0.8880 -0.5172 30 1 -0.3634 -0.8919 -0.5106 31 1 4.5588 2.4341 0.4997 32 1 5.6118 0.9990 0.4977 33 1 7.7424 3.6667 -0.8821 34 1 5.1238 -1.8139 -1.0369 35 1 5.6538 -1.0903 0.5005 36 1 4.6102 -2.5322 0.5086 37 1 2.5903 -3.1880 -0.5070 38 1 0.8982 -2.6361 -0.4984 39 1 0.9792 -2.4259 1.9710 40 1 2.6715 -2.9778 1.9624 41 1 1.1943 -4.6567 3.4670 42 1 1.1788 -8.4200 1.8307 43 1 1.6587 -7.0227 0.8380 44 1 2.5320 -7.3848 2.3461 45 1 1.0391 -7.9089 4.2447 46 1 0.6833 -6.2410 4.7951 47 1 -1.2299 -8.4390 3.9879 48 1 -1.4550 -7.1232 5.1808 49 1 -1.0354 -5.7774 1.3740 50 1 -0.9561 -7.5612 1.5048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157592438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:06 Heat of formation + Delta-G solvation = -29.672231 kcal Electronic energy + Delta-G solvation = -29097.144302 eV Core-core repulsion = 25125.236978 eV Total energy + Delta-G solvation = -3971.907324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.87855 -40.52516 -38.87899 -35.23529 -34.37192 -33.40566 -32.48621 -31.95412 -30.34940 -29.76556 -28.95256 -26.84343 -26.50855 -25.87365 -24.13981 -23.29685 -22.24514 -20.85159 -19.92593 -18.79708 -18.62989 -17.49834 -16.77368 -16.65002 -16.38948 -15.85557 -15.61157 -15.33959 -14.92838 -14.47704 -14.33070 -13.83331 -13.78377 -13.40736 -13.18399 -13.01493 -12.95195 -12.77974 -12.54506 -12.50693 -12.33414 -12.25263 -12.02505 -11.98286 -11.79071 -11.64263 -11.61369 -11.34196 -11.26905 -11.12375 -10.94794 -10.82341 -10.71256 -10.26632 -10.24103 -9.78143 -9.69850 -9.58678 -9.25306 -8.65972 -8.17793 -7.47000 -6.27274 -4.34404 2.56002 2.74503 2.92500 3.19338 3.27357 3.33176 3.40732 3.60065 3.62111 3.93767 4.29088 4.37623 4.49859 4.58934 4.74441 4.86672 5.06533 5.15801 5.19885 5.22064 5.24032 5.28506 5.33729 5.34535 5.37687 5.42524 5.49285 5.62625 5.65595 5.76539 5.82961 5.94732 5.96242 5.98372 6.02617 6.06874 6.24828 6.26724 6.36824 6.40778 6.46693 6.55512 6.85821 7.02684 7.11976 7.31562 7.52122 7.66006 7.87807 8.05760 8.11990 8.67068 8.75588 9.32134 10.80353 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.002157 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.810665 B =12975.497784 C =13406.627777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.093 3.907 15 C -0.086 4.086 16 C -0.269 4.269 17 C -0.009 4.009 18 C -0.134 4.134 19 C 0.516 3.484 20 O -0.536 6.536 21 N -0.724 5.724 22 C 0.144 3.856 23 C -0.161 4.161 24 C -0.158 4.158 25 C 0.044 3.956 26 O -0.373 6.373 27 C 0.043 3.957 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.267 0.733 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.401 0.599 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 -21.619 11.151 26.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.572 4.572 7 H 0.082 0.918 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.281 4.281 17 C -0.048 4.048 18 C -0.174 4.174 19 C 0.304 3.696 20 O -0.412 6.412 21 N -0.378 5.378 22 C 0.057 3.943 23 C -0.219 4.219 24 C -0.196 4.196 25 C -0.033 4.033 26 O -0.292 6.292 27 C -0.035 4.035 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.236 0.764 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.080 0.920 48 H 0.111 0.889 49 H 0.120 0.880 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.493 -20.388 10.452 25.632 hybrid contribution 0.805 -0.323 -0.399 0.955 sum -10.687 -20.710 10.053 25.381 Atomic orbital electron populations 1.20026 0.88047 1.02430 1.01820 1.21946 0.96113 0.90777 1.02510 1.77275 0.87491 1.22681 1.24676 1.49241 1.05780 1.04207 1.51238 1.19653 0.77985 0.89545 0.98930 1.21344 1.12923 1.31628 0.91349 0.91752 1.24932 0.95725 0.95025 0.98168 1.69924 1.18924 1.33063 1.31103 0.86304 0.78377 0.78300 0.83739 1.19556 1.20623 1.20648 1.20773 0.96115 0.85679 1.01252 1.20344 0.93764 0.97113 1.03159 1.19349 0.91327 0.95109 1.22336 1.19379 1.01582 0.90860 0.93024 1.21765 1.03003 0.91195 1.01450 1.21064 0.76166 0.89211 0.83144 1.90653 1.50920 1.68126 1.31547 1.46222 1.69788 1.12509 1.09238 1.21622 0.94861 0.82510 0.95274 1.22190 0.98335 0.98501 1.02868 1.23300 0.98101 1.02638 0.95565 1.23415 0.90957 0.95538 0.93424 1.89179 1.44802 1.70820 1.24391 1.23862 0.87392 1.03107 0.89131 0.91603 0.91585 0.91229 0.93084 0.93122 0.92320 0.90463 0.90966 0.91133 0.91421 0.91268 0.88964 0.89097 0.76380 0.91747 0.89420 0.92158 0.89195 0.89843 0.92023 0.88854 0.88036 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.26 36.01 0.37 -0.56 16 2 C 0.05 0.97 7.22 -82.41 -0.59 0.37 16 3 N -0.30 -6.85 12.58 33.67 0.42 -6.43 16 4 N -0.33 -7.58 3.60 -58.32 -0.21 -7.79 16 5 C 0.26 6.58 6.00 -5.20 -0.03 6.55 16 6 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 7 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 10 Si 0.91 21.25 29.54 -169.99 -5.02 16.22 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.09 1.84 6.93 -82.26 -0.57 1.27 16 15 C -0.09 -1.39 9.72 36.01 0.35 -1.04 16 16 C -0.27 -4.76 5.35 -105.05 -0.56 -5.32 16 17 C -0.01 -0.13 4.41 -27.88 -0.12 -0.26 16 18 C -0.13 -1.47 5.68 -27.88 -0.16 -1.63 16 19 C 0.52 5.66 7.05 -10.99 -0.08 5.59 16 20 O -0.54 -7.45 12.88 5.55 0.07 -7.38 16 21 N -0.72 -6.02 5.16 -46.15 -0.24 -6.25 16 22 C 0.14 1.14 1.02 -130.25 -0.13 1.00 16 23 C -0.16 -1.28 8.23 37.16 0.31 -0.98 16 24 C -0.16 -0.85 6.52 -25.16 -0.16 -1.02 16 25 C 0.04 0.27 7.63 37.93 0.29 0.56 16 26 O -0.37 -3.72 11.65 -35.23 -0.41 -4.13 16 27 C 0.04 0.40 6.50 37.93 0.25 0.65 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.87 7.25 -51.93 -0.38 0.50 16 31 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.05 1.28 7.05 -51.93 -0.37 0.92 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.20 7.08 -51.93 -0.37 0.83 16 36 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 37 H 0.07 0.98 7.73 -51.93 -0.40 0.58 16 38 H 0.07 0.98 7.20 -51.93 -0.37 0.61 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.40 2.45 8.14 -40.82 -0.33 2.12 16 42 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 43 H 0.09 0.93 6.00 -51.93 -0.31 0.62 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.36 7.73 -51.93 -0.40 -0.04 16 46 H 0.08 0.38 7.53 -51.93 -0.39 -0.01 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.10 1.16 6.82 -51.93 -0.35 0.81 16 50 H 0.07 0.58 7.83 -51.93 -0.41 0.18 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -32.85 402.99 -8.10 -40.95 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.26 Total: 1.37 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.27 Total: -8.25 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.71 Total: -44.87 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.34 Total: -11.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.85 -8.10 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157592438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.280 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds