Wall clock time and date at job start Tue Mar 31 2020 20:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30834 * 125.90144 * 2 1 4 4 N 1.40089 * 108.20716 * 180.25460 * 3 2 1 5 5 C 1.46495 * 126.03605 * 179.73936 * 4 3 2 6 6 C 1.50696 * 109.47221 * 269.97314 * 5 4 3 7 7 H 1.08006 * 119.99885 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00124 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00164 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99902 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47433 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47234 * 119.99821 * 10 8 6 13 13 H 1.48506 * 109.46784 * 239.99714 * 10 8 6 14 14 C 1.34947 * 107.92047 * 359.71875 * 4 3 2 15 15 C 1.50704 * 126.12301 * 179.97438 * 14 4 3 16 16 C 1.35316 * 107.74930 * 359.97438 * 14 4 3 17 17 C 1.50701 * 126.03736 * 179.97438 * 16 14 4 18 18 C 1.53003 * 109.46664 * 90.00700 * 17 16 14 19 19 C 1.50705 * 109.47019 * 179.97438 * 18 17 16 20 20 O 1.21288 * 119.99837 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00471 * 180.02562 * 19 18 17 22 22 C 1.46498 * 120.00401 * 179.97438 * 21 19 18 23 23 C 1.53001 * 110.56589 * 57.31859 * 22 21 19 24 24 C 1.54517 * 110.51118 * 179.97438 * 22 21 19 25 25 C 1.54479 * 104.06037 * 118.64396 * 24 22 21 26 26 O 1.44433 * 104.80518 * 336.02227 * 25 24 22 27 27 C 1.44422 * 105.27452 * 40.51075 * 26 25 24 28 28 H 1.08995 * 109.47208 * 270.21732 * 1 2 3 29 29 H 1.08998 * 109.46894 * 30.21708 * 1 2 3 30 30 H 1.09001 * 109.47215 * 150.20870 * 1 2 3 31 31 H 1.08993 * 109.47391 * 29.98094 * 5 4 3 32 32 H 1.09007 * 109.46690 * 149.97782 * 5 4 3 33 33 H 0.96999 * 120.00365 * 179.97438 * 9 8 6 34 34 H 1.08993 * 109.46995 * 270.02198 * 15 14 4 35 35 H 1.08993 * 109.47108 * 30.02228 * 15 14 4 36 36 H 1.09005 * 109.46876 * 150.02429 * 15 14 4 37 37 H 1.08992 * 109.47541 * 330.00149 * 17 16 14 38 38 H 1.09002 * 109.46965 * 210.00038 * 17 16 14 39 39 H 1.08997 * 109.47488 * 59.99953 * 18 17 16 40 40 H 1.09002 * 109.46888 * 299.99385 * 18 17 16 41 41 H 0.97007 * 119.99590 * 359.97438 * 21 19 18 42 42 H 1.08997 * 109.47126 * 182.67900 * 23 22 21 43 43 H 1.09003 * 109.46936 * 302.68128 * 23 22 21 44 44 H 1.09004 * 109.47311 * 62.67568 * 23 22 21 45 45 H 1.08991 * 110.51174 * 237.28796 * 24 22 21 46 46 H 1.08995 * 110.51247 * 0.02562 * 24 22 21 47 47 H 1.08997 * 110.37024 * 94.85221 * 25 24 22 48 48 H 1.08995 * 110.37315 * 217.18852 * 25 24 22 49 49 H 1.08995 * 110.37333 * 200.65712 * 27 26 25 50 50 H 1.09001 * 110.37394 * 78.31441 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0059 5 6 4.7899 1.5007 -0.0133 6 6 5.1882 1.7949 -1.4366 7 1 4.6183 1.3783 -2.2540 8 6 6.2802 2.5958 -1.6953 9 7 6.9739 3.1035 -0.7001 10 14 6.7735 2.9610 -3.4597 11 1 5.8376 2.2762 -4.3872 12 1 6.7208 4.4263 -3.6952 13 1 8.1546 2.4705 -3.6991 14 6 3.6142 -0.7154 -0.0031 15 6 4.8350 -1.5991 -0.0081 16 6 2.3271 -1.1330 0.0048 17 6 1.8599 -2.5658 0.0099 18 6 1.7098 -3.0481 1.4541 19 6 1.2420 -4.4807 1.4592 20 8 1.0473 -5.0588 0.4109 21 7 1.0390 -5.1192 2.6286 22 6 0.5837 -6.5116 2.6335 23 6 1.5583 -7.3986 1.8562 24 6 0.4240 -7.0239 4.0825 25 6 -1.0754 -7.3794 4.1918 26 8 -1.7203 -6.5737 3.1814 27 6 -0.8381 -6.6183 2.0388 28 1 -0.3633 0.0039 1.0276 29 1 -0.3633 0.8880 -0.5172 30 1 -0.3634 -0.8919 -0.5106 31 1 4.5588 2.4341 0.4997 32 1 5.6118 0.9990 0.4977 33 1 7.7424 3.6667 -0.8821 34 1 5.1238 -1.8139 -1.0369 35 1 5.6538 -1.0903 0.5005 36 1 4.6102 -2.5322 0.5086 37 1 2.5903 -3.1880 -0.5070 38 1 0.8982 -2.6361 -0.4984 39 1 0.9792 -2.4259 1.9710 40 1 2.6715 -2.9778 1.9624 41 1 1.1943 -4.6567 3.4670 42 1 1.1788 -8.4200 1.8307 43 1 1.6587 -7.0227 0.8380 44 1 2.5320 -7.3848 2.3461 45 1 1.0391 -7.9089 4.2447 46 1 0.6833 -6.2410 4.7951 47 1 -1.2299 -8.4390 3.9879 48 1 -1.4550 -7.1232 5.1808 49 1 -1.0354 -5.7774 1.3740 50 1 -0.9561 -7.5612 1.5048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157592438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:05 Heat of formation + Delta-G solvation = -51.493530 kcal Electronic energy + Delta-G solvation = -29098.090544 eV Core-core repulsion = 25125.236978 eV Total energy + Delta-G solvation = -3972.853567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.15977 -41.49250 -39.65322 -36.17131 -35.86488 -34.83473 -34.19589 -32.76092 -31.53517 -30.60148 -30.35810 -28.08313 -27.61913 -27.22791 -25.45133 -24.22713 -23.62009 -21.60650 -20.67564 -20.30507 -20.12342 -18.83176 -18.23076 -17.56490 -17.17767 -16.98509 -16.49850 -16.36582 -16.22164 -16.01657 -15.50335 -14.90942 -14.84717 -14.60842 -14.37906 -14.12729 -14.00824 -13.89029 -13.76513 -13.54732 -13.38359 -13.31292 -13.25086 -13.05939 -12.93879 -12.84273 -12.70300 -12.63049 -12.58518 -12.47886 -12.24731 -12.22717 -11.83885 -11.69779 -11.65699 -11.14165 -10.86375 -10.76202 -10.60151 -9.97872 -9.83819 -9.01833 -8.35831 -6.53435 1.17793 1.33773 1.35927 1.48389 1.72618 1.88429 1.95050 2.28368 2.32375 2.93493 3.03390 3.39271 3.79127 3.81677 3.92470 3.98479 4.00567 4.16603 4.24221 4.28012 4.32033 4.36284 4.51950 4.58968 4.65223 4.70966 4.72738 4.74915 4.79201 4.81792 4.84883 4.86194 4.87479 4.91116 4.94999 4.98157 5.04382 5.06830 5.13807 5.30687 5.34981 5.45716 5.49970 5.56418 5.61426 5.79599 5.82944 6.05717 6.32159 6.62067 6.62931 7.11864 7.17989 7.34418 8.70317 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.002157 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.810665 B =12975.497784 C =13406.627777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.053 3.947 3 N -0.351 5.351 4 N -0.356 5.356 5 C 0.275 3.725 6 C -0.551 4.551 7 H 0.046 0.954 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.275 1.275 12 H -0.274 1.274 13 H -0.265 1.265 14 C 0.078 3.922 15 C -0.082 4.082 16 C -0.257 4.257 17 C -0.002 4.002 18 C -0.126 4.126 19 C 0.518 3.482 20 O -0.568 6.568 21 N -0.712 5.712 22 C 0.140 3.860 23 C -0.157 4.157 24 C -0.149 4.149 25 C 0.037 3.963 26 O -0.399 6.399 27 C 0.042 3.958 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.048 0.952 33 H 0.274 0.726 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.414 0.586 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.107 0.893 49 H 0.076 0.924 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.867 -23.769 12.063 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.175 5.175 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.590 4.590 7 H 0.064 0.936 8 C -0.180 4.180 9 N -0.556 5.556 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.199 1.199 13 H -0.190 1.190 14 C -0.052 4.052 15 C -0.140 4.140 16 C -0.269 4.269 17 C -0.041 4.041 18 C -0.166 4.166 19 C 0.307 3.693 20 O -0.448 6.448 21 N -0.366 5.366 22 C 0.054 3.946 23 C -0.215 4.215 24 C -0.186 4.186 25 C -0.039 4.039 26 O -0.318 6.318 27 C -0.035 4.035 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.251 0.749 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.128 0.872 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.126 0.874 49 H 0.094 0.906 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.877 -22.560 11.412 27.933 hybrid contribution 0.802 0.267 -0.628 1.053 sum -11.075 -22.293 10.784 27.128 Atomic orbital electron populations 1.20201 0.84801 1.03404 1.03702 1.22774 0.98081 0.90283 1.00000 1.77208 0.87840 1.25040 1.27392 1.49004 1.05311 1.05204 1.54065 1.19127 0.79052 0.88742 0.97508 1.21448 1.13335 1.32371 0.91810 0.93577 1.25746 0.95432 0.94471 1.02315 1.70002 1.19287 1.33284 1.33047 0.85309 0.78422 0.78220 0.78534 1.19969 1.19928 1.19007 1.21468 0.98213 0.84658 1.00816 1.20437 0.92210 0.97904 1.03459 1.19731 0.90310 0.96585 1.20279 1.19346 1.01255 0.88278 0.95269 1.21635 1.04151 0.91470 0.99352 1.20969 0.75939 0.89062 0.83371 1.90657 1.52516 1.68745 1.32841 1.46120 1.68573 1.12826 1.09033 1.21718 0.93797 0.82123 0.96972 1.22139 0.98901 0.99238 1.01199 1.23296 0.97821 1.03775 0.93751 1.23663 0.91296 0.95828 0.93155 1.89149 1.45706 1.71781 1.25185 1.23790 0.88435 1.02233 0.89073 0.89151 0.91743 0.89090 0.96318 0.93456 0.91720 0.90608 0.91859 0.87458 0.91699 0.91226 0.87775 0.87848 0.74897 0.90175 0.92271 0.91322 0.87217 0.88548 0.90857 0.87442 0.90613 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.26 71.24 0.73 -0.96 16 2 C 0.05 2.01 7.22 43.10 0.31 2.32 16 3 N -0.35 -16.63 12.58 -47.38 -0.60 -17.22 16 4 N -0.36 -17.18 3.60 -338.41 -1.22 -18.39 16 5 C 0.28 14.81 6.00 85.63 0.51 15.32 16 6 C -0.55 -31.61 9.39 25.60 0.24 -31.37 16 7 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 8 C 0.02 1.18 5.46 84.65 0.46 1.64 16 9 N -0.92 -52.53 13.29 21.45 0.28 -52.24 16 10 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 14 C 0.08 3.09 6.93 41.41 0.29 3.38 16 15 C -0.08 -2.63 9.72 71.24 0.69 -1.93 16 16 C -0.26 -8.90 5.35 -20.14 -0.11 -9.01 16 17 C 0.00 -0.07 4.41 29.85 0.13 0.07 16 18 C -0.13 -2.48 5.68 29.85 0.17 -2.31 16 19 C 0.52 10.46 7.05 87.66 0.62 11.08 16 20 O -0.57 -15.32 12.88 -3.05 -0.04 -15.36 16 21 N -0.71 -10.20 5.16 -418.32 -2.16 -12.36 16 22 C 0.14 1.92 1.02 4.62 0.00 1.92 16 23 C -0.16 -2.20 8.23 71.98 0.59 -1.61 16 24 C -0.15 -1.11 6.52 31.61 0.21 -0.91 16 25 C 0.04 0.36 7.63 72.48 0.55 0.91 16 26 O -0.40 -7.37 11.65 -148.98 -1.74 -9.10 16 27 C 0.04 0.76 6.50 72.49 0.47 1.23 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 2.07 7.25 -2.39 -0.02 2.05 16 31 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 2.52 7.05 -2.38 -0.02 2.50 16 33 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.06 2.12 7.08 -2.39 -0.02 2.11 16 36 H 0.11 2.56 7.77 -2.38 -0.02 2.55 16 37 H 0.06 1.78 7.73 -2.39 -0.02 1.76 16 38 H 0.07 1.86 7.20 -2.39 -0.02 1.84 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.41 3.81 8.14 -92.70 -0.75 3.06 16 42 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 43 H 0.06 1.21 6.00 -2.39 -0.01 1.20 16 44 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.11 0.44 7.73 -2.39 -0.02 0.42 16 46 H 0.10 0.50 7.53 -2.39 -0.02 0.48 16 47 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.08 1.74 6.82 -2.39 -0.02 1.72 16 50 H 0.07 1.18 7.83 -2.39 -0.02 1.17 16 Total: -1.00 -74.25 402.99 2.63 -71.62 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.19 Total: 17.39 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.88 Total: -10.22 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -3.69 Total: -100.22 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.78 Total: -24.46 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -74.25 2.63 -71.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157592438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.129 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds