Wall clock time and date at job start Tue Mar 31 2020 18:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38275 * 119.91163 * 2 1 4 4 C 1.38204 * 120.16203 * 180.29661 * 3 2 1 5 5 C 1.38710 * 119.97929 * 359.42904 * 4 3 2 6 6 N 1.40173 * 120.08176 * 180.25257 * 5 4 3 7 7 C 1.34774 * 120.00203 * 20.64670 * 6 5 4 8 8 O 1.21592 * 120.00190 * 5.60002 * 7 6 5 9 9 N 1.34779 * 120.00127 * 185.60460 * 7 6 5 10 10 C 1.46496 * 120.00355 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46759 * 34.99727 * 10 9 7 12 12 C 1.53003 * 109.47141 * 275.00138 * 10 9 7 13 13 C 1.50693 * 109.47387 * 155.00101 * 10 9 7 14 14 H 1.08007 * 120.00016 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00053 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00018 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99917 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47356 * 59.99616 * 17 15 13 19 19 H 1.48501 * 109.46841 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47019 * 299.99471 * 17 15 13 21 21 C 1.39277 * 119.82944 * 0.27228 * 5 4 3 22 22 O 1.35989 * 120.08090 * 180.02562 * 21 5 4 23 23 C 1.42904 * 116.99966 * 179.97438 * 22 21 5 24 24 C 1.52996 * 109.47015 * 180.02562 * 23 22 21 25 25 N 1.46902 * 109.47122 * 65.59183 * 24 23 22 26 26 C 1.46899 * 110.99925 * 76.59810 * 25 24 23 27 27 C 1.46900 * 110.99793 * 200.55448 * 25 24 23 28 28 C 1.38248 * 119.91280 * 179.70386 * 2 1 3 29 29 H 1.08992 * 109.47237 * 270.30173 * 1 2 3 30 30 H 1.09007 * 109.46964 * 30.30026 * 1 2 3 31 31 H 1.09000 * 109.46778 * 150.29438 * 1 2 3 32 32 H 1.08000 * 119.91910 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.01038 * 179.69574 * 4 3 2 34 34 H 0.97003 * 119.99634 * 200.64282 * 6 5 4 35 35 H 0.97001 * 119.99699 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.47035 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.46958 * 299.99467 * 12 10 9 38 38 H 1.08995 * 109.47106 * 59.99731 * 12 10 9 39 39 H 0.97004 * 119.99848 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.46835 * 300.00680 * 23 22 21 41 41 H 1.09002 * 109.46906 * 60.00069 * 23 22 21 42 42 H 1.09005 * 109.47172 * 185.59077 * 24 23 22 43 43 H 1.09002 * 109.46970 * 305.58785 * 24 23 22 44 44 H 1.09003 * 109.46679 * 59.99972 * 26 25 24 45 45 H 1.09001 * 109.47060 * 179.97438 * 26 25 24 46 46 H 1.08993 * 109.47359 * 300.00175 * 26 25 24 47 47 H 1.08997 * 109.47063 * 55.14505 * 27 25 24 48 48 H 1.08997 * 109.46994 * 175.14915 * 27 25 24 49 49 H 1.09006 * 109.46900 * 295.14147 * 27 25 24 50 50 H 1.07997 * 119.99362 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1986 0.0000 4 6 3.5786 1.2046 -0.0062 5 6 4.2770 0.0062 -0.0004 6 7 5.6787 0.0098 -0.0013 7 6 6.3500 1.1059 0.4041 8 8 5.7443 2.0536 0.8662 9 7 7.6928 1.1516 0.2973 10 6 8.4225 2.3432 0.7375 11 1 7.9279 2.7705 1.6098 12 6 8.4442 3.3744 -0.3926 13 6 9.8355 1.9626 1.0974 14 1 10.1577 0.9357 1.0076 15 6 10.7167 2.9252 1.5422 16 7 10.3242 4.1756 1.6520 17 14 12.4685 2.4535 1.9876 18 1 13.1422 1.8723 0.7987 19 1 13.2080 3.6615 2.4339 20 1 12.4479 1.4519 3.0839 21 6 3.5819 -1.2007 0.0058 22 8 4.2614 -2.3786 0.0120 23 6 3.4827 -3.5768 0.0188 24 6 4.4143 -4.7905 0.0257 25 7 5.1664 -4.8232 1.2872 26 6 4.3244 -5.3066 2.3896 27 6 6.3806 -5.6394 1.1550 28 6 2.1965 -1.1983 0.0062 29 1 -0.3633 0.0054 1.0276 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3633 -0.8926 -0.5093 32 1 1.6538 2.1323 0.0004 33 1 4.1146 2.1422 -0.0111 34 1 6.1655 -0.7766 -0.2938 35 1 8.1760 0.3955 -0.0710 36 1 8.9867 4.2612 -0.0649 37 1 8.9388 2.9472 -1.2649 38 1 7.4222 3.6497 -0.6528 39 1 10.9443 4.8529 1.9647 40 1 2.8541 -3.5965 0.9091 41 1 2.8536 -3.6063 -0.8709 42 1 3.8242 -5.7020 -0.0693 43 1 5.1099 -4.7193 -0.8104 44 1 3.9748 -6.3143 2.1648 45 1 4.9060 -5.3214 3.3114 46 1 3.4680 -4.6434 2.5105 47 1 6.9779 -5.2698 0.3216 48 1 6.9622 -5.5770 2.0747 49 1 6.1025 -6.6772 0.9707 50 1 1.6549 -2.1327 0.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160677914.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:20 Heat of formation + Delta-G solvation = -31.742739 kcal Electronic energy + Delta-G solvation = -29199.653642 eV Core-core repulsion = 25227.656534 eV Total energy + Delta-G solvation = -3971.997108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.54276 -39.20883 -38.01674 -36.88545 -35.23100 -34.19358 -32.47919 -31.22078 -30.70003 -29.40555 -28.68231 -27.86873 -26.13665 -25.19802 -24.65234 -22.71800 -21.91903 -21.19989 -20.65569 -19.73161 -18.17015 -17.82097 -17.03530 -16.53978 -15.98041 -15.62094 -15.37881 -15.05875 -14.97421 -14.80758 -14.38433 -14.28078 -13.94551 -13.65987 -13.57479 -13.34865 -13.14067 -12.81518 -12.65307 -12.45701 -12.32863 -12.11824 -11.98019 -11.82799 -11.68973 -11.60705 -11.33736 -11.06546 -11.02208 -10.94443 -10.76410 -10.66533 -10.28351 -10.18678 -9.94763 -9.15319 -9.00756 -8.63014 -8.50874 -8.33799 -7.93262 -7.26988 -6.08467 -4.17222 1.53837 1.62964 3.11481 3.28713 3.31592 3.33922 3.39794 3.61177 3.73121 4.18747 4.36338 4.59263 4.70299 4.85850 4.90737 4.99218 5.01662 5.02722 5.04109 5.09985 5.23082 5.24234 5.27639 5.32107 5.43526 5.45443 5.56633 5.63758 5.66991 5.71569 5.73964 5.93450 6.11891 6.33535 6.46348 6.68616 6.70940 6.76942 6.84765 6.90441 7.03047 7.15472 7.18779 7.34132 7.54136 7.60748 7.67109 7.90324 8.07614 8.20221 8.79041 8.92053 9.31991 9.51584 10.97640 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009454 B = 0.003163 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.905682 B = 8849.804263 C =11414.192645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.104 4.104 5 C 0.157 3.843 6 N -0.682 5.682 7 C 0.694 3.306 8 O -0.584 6.584 9 N -0.718 5.718 10 C 0.281 3.719 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.533 4.533 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.089 3.911 22 O -0.301 6.301 23 C 0.070 3.930 24 C 0.054 3.946 25 N -0.540 5.540 26 C 0.022 3.978 27 C 0.026 3.974 28 C -0.190 4.190 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.122 0.878 33 H 0.165 0.835 34 H 0.407 0.593 35 H 0.386 0.614 36 H 0.090 0.910 37 H 0.025 0.975 38 H 0.015 0.985 39 H 0.265 0.735 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.024 0.976 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.022 0.978 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 -18.610 -4.863 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.328 5.328 7 C 0.395 3.605 8 O -0.462 6.462 9 N -0.369 5.369 10 C 0.179 3.821 11 H 0.068 0.932 12 C -0.206 4.206 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C 0.042 3.958 22 O -0.215 6.215 23 C -0.006 4.006 24 C -0.074 4.074 25 N -0.263 5.263 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.209 4.209 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.182 0.818 34 H 0.241 0.759 35 H 0.218 0.782 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.041 0.959 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.462 -17.049 -4.261 24.079 hybrid contribution 0.968 -1.977 -0.174 2.208 sum -15.494 -19.025 -4.435 24.934 Atomic orbital electron populations 1.20707 0.91528 1.02243 1.01934 1.19571 0.95621 0.92600 1.01053 1.20861 0.93702 0.97257 1.03336 1.21674 0.93845 0.98459 0.98480 1.16963 0.82332 0.91108 1.03595 1.42655 1.04084 1.17325 1.68773 1.16137 0.82972 0.82327 0.79090 1.90771 1.67256 1.36785 1.51436 1.45859 1.03483 1.21759 1.65801 1.18666 0.90067 0.79894 0.93497 0.93246 1.22103 0.97972 1.02414 0.98148 1.21188 0.95357 0.94942 1.45706 0.92121 1.24872 0.98886 0.94801 0.95114 1.69897 1.35703 1.00831 1.45682 0.86500 0.83810 0.77872 0.78850 1.20190 1.21149 1.20179 1.18566 0.90479 0.84647 1.02146 1.86087 1.34760 1.11462 1.89157 1.22726 0.93676 0.83297 1.00909 1.22206 0.96991 0.95124 0.93092 1.61874 1.06930 1.53127 1.04407 1.22460 0.97772 0.97666 0.94726 1.22407 0.92299 0.94366 1.03156 1.20721 0.91876 0.98489 1.09830 0.91557 0.91669 0.92149 0.86012 0.81820 0.75854 0.78150 0.89125 0.95534 0.96559 0.92531 0.92202 0.91976 0.92592 0.89615 0.95768 0.91099 0.91356 0.91043 0.91083 0.95901 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.09 -1.08 5.88 -104.60 -0.62 -1.70 16 3 C -0.13 -1.89 9.69 -39.58 -0.38 -2.27 16 4 C -0.10 -1.79 8.77 -39.42 -0.35 -2.14 16 5 C 0.16 2.67 6.51 -83.48 -0.54 2.13 16 6 N -0.68 -11.96 5.33 -14.10 -0.08 -12.03 16 7 C 0.69 14.87 8.37 -86.92 -0.73 14.14 16 8 O -0.58 -14.37 12.96 5.28 0.07 -14.30 16 9 N -0.72 -15.58 5.07 -59.82 -0.30 -15.88 16 10 C 0.28 7.29 2.56 -69.09 -0.18 7.11 16 11 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 12 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 13 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 16 N -0.88 -25.13 11.32 55.43 0.63 -24.50 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.09 1.29 6.70 -39.08 -0.26 1.03 16 22 O -0.30 -3.93 9.46 -19.70 -0.19 -4.12 16 23 C 0.07 0.65 4.94 37.16 0.18 0.83 16 24 C 0.05 0.44 5.39 -3.82 -0.02 0.42 16 25 N -0.54 -5.25 4.90 -251.26 -1.23 -6.48 16 26 C 0.02 0.18 9.40 60.06 0.56 0.74 16 27 C 0.03 0.21 9.56 60.06 0.57 0.79 16 28 C -0.19 -2.36 8.69 -39.47 -0.34 -2.70 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.16 3.24 5.49 -52.49 -0.29 2.95 16 34 H 0.41 6.17 8.28 -40.82 -0.34 5.83 16 35 H 0.39 7.29 8.56 -40.82 -0.35 6.94 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.06 0.54 6.33 -51.93 -0.33 0.21 16 41 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 42 H 0.06 0.35 7.94 -51.93 -0.41 -0.06 16 43 H 0.09 0.69 7.80 -51.93 -0.41 0.28 16 44 H 0.02 0.16 8.08 -51.93 -0.42 -0.26 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.56 6.84 -51.93 -0.36 0.21 16 47 H 0.07 0.58 7.95 -51.93 -0.41 0.17 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 50 H 0.12 1.19 6.30 -52.49 -0.33 0.86 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -32.04 403.66 -9.91 -41.95 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -8.09 Total: 11.99 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.79 Total: 1.45 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.98 Total: -58.90 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.12 Total: -18.42 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.04 -9.91 -41.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160677914.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.208 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds