Wall clock time and date at job start Tue Mar 31 2020 18:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38275 * 119.91163 * 2 1 4 4 C 1.38204 * 120.16203 * 180.29661 * 3 2 1 5 5 C 1.38710 * 119.97929 * 359.42904 * 4 3 2 6 6 N 1.40173 * 120.08176 * 180.25257 * 5 4 3 7 7 C 1.34774 * 120.00203 * 20.64670 * 6 5 4 8 8 O 1.21592 * 120.00190 * 5.60002 * 7 6 5 9 9 N 1.34779 * 120.00127 * 185.60460 * 7 6 5 10 10 C 1.46496 * 120.00355 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46759 * 34.99727 * 10 9 7 12 12 C 1.53003 * 109.47141 * 275.00138 * 10 9 7 13 13 C 1.50693 * 109.47387 * 155.00101 * 10 9 7 14 14 H 1.08007 * 120.00016 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00053 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00018 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99917 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47356 * 59.99616 * 17 15 13 19 19 H 1.48501 * 109.46841 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47019 * 299.99471 * 17 15 13 21 21 C 1.39277 * 119.82944 * 0.27228 * 5 4 3 22 22 O 1.35989 * 120.08090 * 180.02562 * 21 5 4 23 23 C 1.42904 * 116.99966 * 179.97438 * 22 21 5 24 24 C 1.52996 * 109.47015 * 180.02562 * 23 22 21 25 25 N 1.46902 * 109.47122 * 65.59183 * 24 23 22 26 26 C 1.46899 * 110.99925 * 76.59810 * 25 24 23 27 27 C 1.46900 * 110.99793 * 200.55448 * 25 24 23 28 28 C 1.38248 * 119.91280 * 179.70386 * 2 1 3 29 29 H 1.08992 * 109.47237 * 270.30173 * 1 2 3 30 30 H 1.09007 * 109.46964 * 30.30026 * 1 2 3 31 31 H 1.09000 * 109.46778 * 150.29438 * 1 2 3 32 32 H 1.08000 * 119.91910 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.01038 * 179.69574 * 4 3 2 34 34 H 0.97003 * 119.99634 * 200.64282 * 6 5 4 35 35 H 0.97001 * 119.99699 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.47035 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.46958 * 299.99467 * 12 10 9 38 38 H 1.08995 * 109.47106 * 59.99731 * 12 10 9 39 39 H 0.97004 * 119.99848 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.46835 * 300.00680 * 23 22 21 41 41 H 1.09002 * 109.46906 * 60.00069 * 23 22 21 42 42 H 1.09005 * 109.47172 * 185.59077 * 24 23 22 43 43 H 1.09002 * 109.46970 * 305.58785 * 24 23 22 44 44 H 1.09003 * 109.46679 * 59.99972 * 26 25 24 45 45 H 1.09001 * 109.47060 * 179.97438 * 26 25 24 46 46 H 1.08993 * 109.47359 * 300.00175 * 26 25 24 47 47 H 1.08997 * 109.47063 * 55.14505 * 27 25 24 48 48 H 1.08997 * 109.46994 * 175.14915 * 27 25 24 49 49 H 1.09006 * 109.46900 * 295.14147 * 27 25 24 50 50 H 1.07997 * 119.99362 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1986 0.0000 4 6 3.5786 1.2046 -0.0062 5 6 4.2770 0.0062 -0.0004 6 7 5.6787 0.0098 -0.0013 7 6 6.3500 1.1059 0.4041 8 8 5.7443 2.0536 0.8662 9 7 7.6928 1.1516 0.2973 10 6 8.4225 2.3432 0.7375 11 1 7.9279 2.7705 1.6098 12 6 8.4442 3.3744 -0.3926 13 6 9.8355 1.9626 1.0974 14 1 10.1577 0.9357 1.0076 15 6 10.7167 2.9252 1.5422 16 7 10.3242 4.1756 1.6520 17 14 12.4685 2.4535 1.9876 18 1 13.1422 1.8723 0.7987 19 1 13.2080 3.6615 2.4339 20 1 12.4479 1.4519 3.0839 21 6 3.5819 -1.2007 0.0058 22 8 4.2614 -2.3786 0.0120 23 6 3.4827 -3.5768 0.0188 24 6 4.4143 -4.7905 0.0257 25 7 5.1664 -4.8232 1.2872 26 6 4.3244 -5.3066 2.3896 27 6 6.3806 -5.6394 1.1550 28 6 2.1965 -1.1983 0.0062 29 1 -0.3633 0.0054 1.0276 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3633 -0.8926 -0.5093 32 1 1.6538 2.1323 0.0004 33 1 4.1146 2.1422 -0.0111 34 1 6.1655 -0.7766 -0.2938 35 1 8.1760 0.3955 -0.0710 36 1 8.9867 4.2612 -0.0649 37 1 8.9388 2.9472 -1.2649 38 1 7.4222 3.6497 -0.6528 39 1 10.9443 4.8529 1.9647 40 1 2.8541 -3.5965 0.9091 41 1 2.8536 -3.6063 -0.8709 42 1 3.8242 -5.7020 -0.0693 43 1 5.1099 -4.7193 -0.8104 44 1 3.9748 -6.3143 2.1648 45 1 4.9060 -5.3214 3.3114 46 1 3.4680 -4.6434 2.5105 47 1 6.9779 -5.2698 0.3216 48 1 6.9622 -5.5770 2.0747 49 1 6.1025 -6.6772 0.9707 50 1 1.6549 -2.1327 0.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160677914.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:18 Heat of formation + Delta-G solvation = -53.738737 kcal Electronic energy + Delta-G solvation = -29200.607460 eV Core-core repulsion = 25227.656534 eV Total energy + Delta-G solvation = -3972.950926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.82466 -40.57249 -38.94337 -37.73481 -36.98410 -35.79706 -34.39530 -32.47136 -31.57883 -30.54583 -30.30074 -28.47981 -27.37624 -27.14764 -25.43385 -23.91255 -23.30738 -22.20662 -21.84448 -21.46337 -19.75940 -19.11461 -18.19066 -17.79590 -17.28890 -16.89625 -16.77342 -16.28784 -16.04330 -15.91800 -15.67586 -15.47407 -15.15036 -15.00619 -14.83566 -14.40997 -14.33786 -14.14405 -13.73974 -13.44672 -13.38933 -13.21838 -12.98928 -12.92030 -12.86076 -12.72788 -12.62881 -12.58758 -12.50869 -12.34191 -12.25732 -12.12500 -11.84113 -11.61720 -11.29067 -11.10768 -10.81969 -10.56700 -9.83239 -9.43343 -9.25093 -8.50867 -8.16608 -6.34007 0.38565 0.51324 1.45276 1.48178 1.55644 1.78147 2.18324 2.26880 2.43372 2.90961 3.00863 3.13671 3.43944 3.83781 3.99718 4.02470 4.13393 4.22894 4.29446 4.38069 4.42477 4.46032 4.51778 4.60083 4.65062 4.73679 4.76358 4.81711 4.85743 4.92607 4.93682 4.97984 5.02854 5.04440 5.09681 5.12141 5.21948 5.37197 5.43581 5.59662 5.65929 5.67094 5.74305 5.86307 5.96267 6.08025 6.10200 6.11907 6.28952 6.57005 6.73149 7.22898 7.34452 7.68261 8.89875 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009454 B = 0.003163 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.905682 B = 8849.804263 C =11414.192645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.126 4.126 5 C 0.117 3.883 6 N -0.666 5.666 7 C 0.693 3.307 8 O -0.621 6.621 9 N -0.714 5.714 10 C 0.290 3.710 11 H -0.001 1.001 12 C -0.133 4.133 13 C -0.549 4.549 14 H 0.072 0.928 15 C 0.015 3.985 16 N -0.917 5.917 17 Si 0.974 3.026 18 H -0.263 1.263 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.098 3.902 22 O -0.315 6.315 23 C 0.062 3.938 24 C 0.056 3.944 25 N -0.568 5.568 26 C 0.023 3.977 27 C 0.027 3.973 28 C -0.186 4.186 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.417 0.583 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.012 0.988 39 H 0.266 0.734 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.040 0.960 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.037 0.963 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.826 -21.786 -5.529 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.076 4.076 3 C -0.163 4.163 4 C -0.147 4.147 5 C 0.021 3.979 6 N -0.313 5.313 7 C 0.393 3.607 8 O -0.503 6.503 9 N -0.367 5.367 10 C 0.186 3.814 11 H 0.017 0.983 12 C -0.192 4.192 13 C -0.587 4.587 14 H 0.091 0.909 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.798 3.202 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.050 3.950 22 O -0.229 6.229 23 C -0.013 4.013 24 C -0.072 4.072 25 N -0.293 5.293 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.205 4.205 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.254 0.746 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.056 0.944 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.822 -20.297 -4.958 27.462 hybrid contribution 1.208 -1.068 0.034 1.613 sum -16.613 -21.365 -4.924 27.509 Atomic orbital electron populations 1.20798 0.88451 1.03914 1.03123 1.20025 0.97745 0.91680 0.98173 1.21049 0.92532 0.99057 1.03660 1.21470 0.95302 0.97408 1.00520 1.17189 0.81707 0.92385 1.06609 1.42317 1.04652 1.16284 1.68085 1.16231 0.82707 0.82862 0.78882 1.90762 1.67956 1.38552 1.53022 1.45483 1.03742 1.21245 1.66198 1.18256 0.89910 0.81278 0.91954 0.98264 1.21917 0.97474 1.01515 0.98310 1.21503 0.95628 0.95626 1.45950 0.90948 1.25799 1.03293 0.94615 0.94785 1.70050 1.37216 1.01952 1.46277 0.85370 0.78343 0.77532 0.78910 1.18795 1.21027 1.19660 1.18586 0.91153 0.84379 1.00888 1.86085 1.36015 1.11993 1.88808 1.23070 0.94091 0.81924 1.02256 1.22251 0.97064 0.95544 0.92352 1.61862 1.07809 1.54171 1.05468 1.22446 0.97406 0.98476 0.94175 1.22375 0.91914 0.95054 1.02717 1.21130 0.91048 0.99992 1.08306 0.90407 0.90748 0.89867 0.84698 0.85385 0.74586 0.76390 0.91239 0.94165 0.96920 0.92466 0.91615 0.89611 0.90048 0.89758 0.94145 0.91729 0.91536 0.91352 0.91741 0.94438 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 71.24 0.71 -0.78 16 2 C -0.08 -1.68 5.88 -19.85 -0.12 -1.80 16 3 C -0.14 -4.08 9.69 22.27 0.22 -3.87 16 4 C -0.13 -4.57 8.77 22.37 0.20 -4.37 16 5 C 0.12 4.06 6.51 38.17 0.25 4.31 16 6 N -0.67 -24.15 5.33 -316.80 -1.69 -25.84 16 7 C 0.69 31.20 8.37 179.05 1.50 32.70 16 8 O -0.62 -32.81 12.96 -4.00 -0.05 -32.86 16 9 N -0.71 -32.12 5.07 -461.42 -2.34 -34.46 16 10 C 0.29 15.69 2.56 44.24 0.11 15.80 16 11 H 0.00 -0.04 7.58 -2.39 -0.02 -0.05 16 12 C -0.13 -7.01 9.26 71.98 0.67 -6.34 16 13 C -0.55 -29.95 8.73 25.60 0.22 -29.73 16 14 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 15 C 0.02 0.84 5.30 84.65 0.45 1.28 16 16 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 17 Si 0.97 42.75 29.54 68.60 2.03 44.78 16 18 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 C 0.10 2.70 6.70 22.59 0.15 2.85 16 22 O -0.32 -7.68 9.46 -93.42 -0.88 -8.56 16 23 C 0.06 0.94 4.94 71.98 0.36 1.30 16 24 C 0.06 0.75 5.39 86.30 0.47 1.21 16 25 N -0.57 -10.03 4.90 -948.84 -4.65 -14.68 16 26 C 0.02 0.33 9.40 127.69 1.20 1.53 16 27 C 0.03 0.41 9.56 127.69 1.22 1.63 16 28 C -0.19 -4.07 8.69 22.34 0.19 -3.87 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.95 8.09 -2.38 -0.02 0.93 16 31 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 32 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.13 5.55 5.49 -2.91 -0.02 5.53 16 34 H 0.42 12.85 8.28 -92.71 -0.77 12.09 16 35 H 0.40 15.36 8.56 -92.71 -0.79 14.56 16 36 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.07 0.95 6.33 -2.39 -0.02 0.93 16 41 H 0.09 0.93 7.66 -2.39 -0.02 0.91 16 42 H 0.08 0.70 7.94 -2.38 -0.02 0.68 16 43 H 0.08 1.16 7.80 -2.39 -0.02 1.14 16 44 H 0.04 0.44 8.08 -2.39 -0.02 0.42 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 0.96 6.84 -2.39 -0.02 0.94 16 47 H 0.07 1.04 7.95 -2.39 -0.02 1.02 16 48 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.04 0.44 8.14 -2.38 -0.02 0.42 16 50 H 0.16 2.31 6.30 -2.91 -0.02 2.29 16 Total: -1.00 -72.82 403.66 -0.15 -72.97 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.60 Total: 40.08 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 7.79 Total: 11.87 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -8.43 Total: -128.27 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.94 Total: -41.42 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.82 -0.15 -72.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160677914.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.232 kcal (2) G-P(sol) polarization free energy of solvation -72.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds