Wall clock time and date at job start Tue Mar 31 2020 19:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47545 * 2 1 4 4 C 1.50700 * 109.46741 * 120.00404 * 2 1 3 5 5 H 1.08002 * 120.00112 * 120.00001 * 4 2 1 6 6 C 1.37882 * 119.99995 * 299.99179 * 4 2 1 7 7 N 1.31516 * 119.99748 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00205 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47371 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47346 * 120.00282 * 8 6 4 11 11 H 1.48503 * 109.47148 * 240.00398 * 8 6 4 12 12 N 1.46504 * 109.46990 * 239.99534 * 2 1 3 13 13 C 1.34776 * 119.99391 * 85.00237 * 12 2 1 14 14 O 1.21278 * 120.00494 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99919 * 179.97438 * 13 12 2 16 16 H 1.09005 * 110.01382 * 29.37488 * 15 13 12 17 17 C 1.53876 * 110.03239 * 150.81408 * 15 13 12 18 18 C 1.54271 * 106.59700 * 119.28971 * 17 15 13 19 19 C 1.52993 * 110.48397 * 142.28843 * 18 17 15 20 20 C 1.54896 * 104.19577 * 23.60879 * 18 17 15 21 21 C 1.54265 * 110.03831 * 267.98560 * 15 13 12 22 22 H 1.09003 * 110.48609 * 98.28670 * 21 15 13 23 23 C 1.50700 * 110.48266 * 335.78447 * 21 15 13 24 24 O 1.21284 * 119.99995 * 275.79240 * 23 21 15 25 25 N 1.34773 * 120.00290 * 95.79296 * 23 21 15 26 26 C 1.46510 * 119.99848 * 180.27468 * 25 23 21 27 27 H 1.08992 * 109.47351 * 324.72137 * 26 25 23 28 28 C 1.53004 * 109.46849 * 84.72596 * 26 25 23 29 29 C 1.52999 * 109.46690 * 204.72147 * 26 25 23 30 30 C 1.47202 * 109.47246 * 65.00519 * 29 26 25 31 31 N 7.21835 * 171.99778 * 288.52962 * 2 1 3 32 32 H 1.09001 * 109.47173 * 300.00279 * 1 2 3 33 33 H 1.09002 * 109.46708 * 59.99831 * 1 2 3 34 34 H 1.08996 * 109.47545 * 180.02562 * 1 2 3 35 35 H 0.97004 * 119.99982 * 179.97438 * 7 6 4 36 36 H 0.96989 * 120.00355 * 265.00232 * 12 2 1 37 37 H 1.08996 * 110.03398 * 238.57312 * 17 15 13 38 38 H 1.08995 * 110.03057 * 0.02562 * 17 15 13 39 39 H 1.08994 * 110.48273 * 264.80293 * 18 17 15 40 40 H 1.09003 * 109.47487 * 61.45842 * 19 18 17 41 41 H 1.09010 * 109.46664 * 181.45415 * 19 18 17 42 42 H 1.08997 * 109.47263 * 301.45028 * 19 18 17 43 43 H 1.08995 * 110.75543 * 203.74125 * 20 18 17 44 44 H 1.09001 * 110.75158 * 80.37056 * 20 18 17 45 45 H 0.96993 * 120.00402 * 359.97438 * 25 23 21 46 46 H 1.09000 * 109.46440 * 179.97438 * 28 26 25 47 47 H 1.09003 * 109.46639 * 299.99519 * 28 26 25 48 48 H 1.08997 * 109.47386 * 60.00362 * 28 26 25 49 49 H 1.09005 * 109.47109 * 184.99941 * 29 26 25 50 50 H 1.08993 * 109.47774 * 304.99952 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9429 0.8297 2.6034 8 14 2.3223 -1.1196 4.0079 9 1 3.1481 -2.2858 3.6039 10 1 3.1472 -0.1860 4.8161 11 1 1.1675 -1.5866 4.8165 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6499 -0.7286 -3.5875 16 1 2.3761 -1.7830 -3.5477 17 6 2.0598 -0.0771 -4.8504 18 6 3.2542 0.4406 -5.6783 19 6 2.9974 0.2383 -7.1729 20 6 4.4466 -0.4302 -5.2103 21 6 4.1822 -0.5842 -3.6920 22 1 4.6766 -1.4753 -3.3050 23 6 4.6484 0.6409 -2.9485 24 8 4.6229 1.7255 -3.4906 25 7 5.0937 0.5313 -1.6812 26 6 5.5412 1.7233 -0.9563 27 1 6.0320 2.4069 -1.6491 28 6 4.3341 2.4182 -0.3231 29 6 6.5268 1.3134 0.1398 30 6 7.7409 0.7536 -0.4761 31 7 8.6781 0.3193 -0.9528 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 0.7083 1.1609 3.4844 36 1 2.2490 -1.6318 -1.1526 37 1 1.4996 -0.8151 -5.4244 38 1 1.4101 0.7531 -4.5734 39 1 3.4400 1.4928 -5.4630 40 1 2.1155 0.8057 -7.4702 41 1 3.8611 0.5854 -7.7402 42 1 2.8328 -0.8204 -7.3733 43 1 5.3921 0.0821 -5.3878 44 1 4.4333 -1.4013 -5.7052 45 1 5.1138 -0.3360 -1.2474 46 1 4.6672 3.3048 0.2165 47 1 3.6320 2.7102 -1.1041 48 1 3.8435 1.7346 0.3697 49 1 6.7915 2.1870 0.7356 50 1 6.0654 0.5626 0.7811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185785451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:17 Heat of formation + Delta-G solvation = -94.278221 kcal Electronic energy + Delta-G solvation = -31465.655812 eV Core-core repulsion = 27490.946963 eV Total energy + Delta-G solvation = -3974.708850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.88059 -39.97108 -38.67209 -37.69788 -36.46245 -36.28243 -34.19714 -33.23757 -32.03313 -30.73186 -29.78322 -29.02801 -27.21182 -26.40694 -24.50681 -23.04547 -22.05821 -21.39768 -20.88778 -20.39237 -19.16099 -18.46595 -18.00036 -17.45850 -17.08370 -16.83731 -16.48543 -15.97370 -15.69689 -15.32240 -15.15104 -14.95185 -14.76461 -14.59936 -14.50488 -14.34566 -14.18434 -13.83489 -13.57431 -13.32439 -13.19469 -12.98179 -12.85672 -12.79542 -12.73496 -12.66468 -12.59832 -12.55006 -12.39319 -12.15281 -12.10493 -12.00089 -11.82697 -11.73537 -11.45037 -11.28137 -10.91795 -10.66200 -10.49466 -10.30628 -9.99418 -9.55381 -8.03629 -6.18829 1.51279 1.56156 1.64435 1.73454 1.74715 1.80301 1.94819 2.27422 2.46067 2.77311 3.00626 3.28404 3.50881 3.65716 3.73668 3.87047 4.14806 4.21131 4.27929 4.35172 4.41466 4.45683 4.52029 4.58116 4.67521 4.70356 4.82494 4.84868 4.87166 4.89891 4.96005 5.01257 5.05461 5.10652 5.13822 5.15085 5.25410 5.39446 5.43776 5.49640 5.60742 5.65250 5.71100 5.80016 5.84181 6.06487 6.23917 6.56679 6.66031 6.90209 7.15264 7.41319 7.48705 7.75816 9.02157 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.005072 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.213635 B = 5519.696329 C = 7453.176884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.279 3.721 3 H 0.013 0.987 4 C -0.527 4.527 5 H 0.077 0.923 6 C 0.023 3.977 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.257 1.257 10 H -0.284 1.284 11 H -0.294 1.294 12 N -0.700 5.700 13 C 0.499 3.501 14 O -0.581 6.581 15 C -0.095 4.095 16 H 0.135 0.865 17 C -0.105 4.105 18 C -0.094 4.094 19 C -0.136 4.136 20 C -0.089 4.089 21 C -0.101 4.101 22 H 0.131 0.869 23 C 0.515 3.485 24 O -0.565 6.565 25 N -0.718 5.718 26 C 0.160 3.840 27 H 0.077 0.923 28 C -0.150 4.150 29 C -0.028 4.028 30 C 0.236 3.764 31 N -0.489 5.489 32 H 0.062 0.938 33 H 0.001 0.999 34 H 0.035 0.965 35 H 0.260 0.740 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.409 0.591 46 H 0.081 0.919 47 H 0.026 0.974 48 H 0.059 0.941 49 H 0.158 0.842 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -6.798 -9.596 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.176 3.824 3 H 0.031 0.969 4 C -0.565 4.565 5 H 0.095 0.905 6 C -0.177 4.177 7 N -0.555 5.555 8 Si 0.784 3.216 9 H -0.180 1.180 10 H -0.210 1.210 11 H -0.221 1.221 12 N -0.349 5.349 13 C 0.285 3.715 14 O -0.461 6.461 15 C -0.117 4.117 16 H 0.153 0.847 17 C -0.142 4.142 18 C -0.113 4.113 19 C -0.194 4.194 20 C -0.127 4.127 21 C -0.123 4.123 22 H 0.149 0.851 23 C 0.302 3.698 24 O -0.443 6.443 25 N -0.371 5.371 26 C 0.054 3.946 27 H 0.095 0.905 28 C -0.209 4.209 29 C -0.068 4.068 30 C -0.081 4.081 31 N -0.166 5.166 32 H 0.081 0.919 33 H 0.021 0.979 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.237 0.763 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.244 0.756 46 H 0.100 0.900 47 H 0.045 0.955 48 H 0.078 0.922 49 H 0.175 0.825 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.716 -5.717 -10.560 14.838 hybrid contribution -0.664 -0.231 1.607 1.755 sum 8.051 -5.949 -8.952 13.430 Atomic orbital electron populations 1.21973 1.00029 0.98885 0.98916 1.18270 0.89700 0.92690 0.81783 0.96895 1.21479 1.31812 1.13040 0.90159 0.90470 1.25591 0.95032 0.95350 1.01710 1.70070 1.37301 1.24132 1.24015 0.85518 0.77807 0.78861 0.79415 1.18035 1.20965 1.22128 1.46257 1.65165 1.13870 1.09608 1.20995 0.77803 0.87224 0.85490 1.90688 1.51796 1.18162 1.85457 1.22008 0.94131 1.02569 0.92993 0.84741 1.22150 0.98093 0.99979 0.94022 1.21909 0.94316 0.99292 0.95752 1.21760 1.01331 1.02648 0.93625 1.22446 0.97940 1.01283 0.91016 1.22200 0.94796 0.96899 0.98388 0.85132 1.20857 0.75974 0.91067 0.81897 1.90640 1.54550 1.30258 1.68835 1.46082 1.65870 1.11360 1.13781 1.20703 0.93739 0.87449 0.92709 0.90458 1.22030 0.97245 1.01236 1.00358 1.19860 0.84957 1.05047 0.96931 1.29526 0.94060 0.92105 0.92421 1.81287 1.13521 1.11386 1.10441 0.91891 0.97948 0.94617 0.93042 0.76263 0.88738 0.93997 0.93293 0.93222 0.92466 0.90550 0.92177 0.87057 0.75554 0.90009 0.95454 0.92173 0.82494 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.65 9.26 71.98 0.67 -5.98 16 2 C 0.28 12.56 2.56 44.25 0.11 12.67 16 3 H 0.01 0.71 6.42 -2.39 -0.02 0.69 16 4 C -0.53 -23.66 8.73 25.60 0.22 -23.43 16 5 H 0.08 3.15 7.74 -2.91 -0.02 3.13 16 6 C 0.02 1.11 5.30 84.66 0.45 1.55 16 7 N -0.92 -48.12 11.32 21.45 0.24 -47.88 16 8 Si 0.96 37.55 29.54 68.60 2.03 39.58 16 9 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 10 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 12 N -0.70 -24.32 5.07 -446.09 -2.26 -26.58 16 13 C 0.50 17.61 5.35 87.66 0.47 18.08 16 14 O -0.58 -26.97 14.72 -3.02 -0.04 -27.01 16 15 C -0.10 -2.36 3.21 -10.81 -0.03 -2.40 16 16 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 17 C -0.10 -2.73 5.89 31.32 0.18 -2.55 16 18 C -0.09 -2.35 3.03 -9.72 -0.03 -2.38 16 19 C -0.14 -2.53 9.11 71.98 0.66 -1.88 16 20 C -0.09 -1.83 5.56 31.89 0.18 -1.66 16 21 C -0.10 -2.29 3.27 -10.47 -0.03 -2.32 16 22 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 23 C 0.51 15.76 4.84 87.66 0.42 16.19 16 24 O -0.56 -22.14 14.44 -3.04 -0.04 -22.18 16 25 N -0.72 -19.01 4.64 -442.52 -2.05 -21.06 16 26 C 0.16 4.10 2.55 44.99 0.11 4.21 16 27 H 0.08 2.18 7.58 -2.39 -0.02 2.16 16 28 C -0.15 -4.85 9.41 71.98 0.68 -4.17 16 29 C -0.03 -0.48 5.25 28.79 0.15 -0.33 16 30 C 0.24 5.24 15.15 89.42 1.35 6.59 16 31 N -0.49 -13.74 18.55 20.03 0.37 -13.37 16 32 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 33 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 36 H 0.40 11.21 8.54 -92.72 -0.79 10.42 16 37 H 0.09 1.87 7.84 -2.39 -0.02 1.85 16 38 H 0.04 1.45 6.81 -2.39 -0.02 1.44 16 39 H 0.05 1.66 6.84 -2.39 -0.02 1.64 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.39 8.00 -2.39 -0.02 1.37 16 44 H 0.11 1.50 8.06 -2.39 -0.02 1.48 16 45 H 0.41 9.01 8.60 -92.71 -0.80 8.22 16 46 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 47 H 0.03 1.13 8.03 -2.39 -0.02 1.11 16 48 H 0.06 2.22 7.06 -2.39 -0.02 2.20 16 49 H 0.16 1.76 8.14 -2.38 -0.02 1.74 16 50 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -73.59 405.36 3.17 -70.42 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.63 Total: 35.88 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.56 Total: 12.20 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.70 Total: -108.89 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.09 Total: -49.20 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -73.59 3.17 -70.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185785451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.856 kcal (2) G-P(sol) polarization free energy of solvation -73.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds