Wall clock time and date at job start Tue Mar 31 2020 19:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39838 * 126.45371 * 2 1 4 4 C 1.35457 * 107.86626 * 179.97438 * 3 2 1 5 5 N 1.35538 * 108.87042 * 359.72876 * 4 3 2 6 6 C 1.46499 * 125.67821 * 180.30099 * 5 4 3 7 7 C 1.37660 * 108.64206 * 0.43951 * 5 4 3 8 8 C 1.46670 * 126.23173 * 179.82836 * 7 5 4 9 9 O 1.21699 * 120.00047 * 90.93832 * 8 7 5 10 10 N 1.34783 * 120.00177 * 270.93660 * 8 7 5 11 11 C 1.46496 * 119.99676 * 5.43099 * 10 8 7 12 12 C 1.50702 * 109.47291 * 264.83731 * 11 10 8 13 13 H 1.08003 * 119.99473 * 4.89160 * 12 11 10 14 14 C 1.37870 * 120.00210 * 184.89910 * 12 11 10 15 15 N 1.31514 * 120.00040 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99972 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46701 * 89.99801 * 16 14 12 18 18 H 1.48498 * 109.46919 * 209.99438 * 16 14 12 19 19 H 1.48493 * 109.46856 * 329.99857 * 16 14 12 20 20 C 1.46494 * 120.00009 * 185.43141 * 10 8 7 21 21 C 1.53006 * 109.46987 * 270.00025 * 20 10 8 22 22 N 1.46904 * 109.46792 * 180.02562 * 21 20 10 23 23 C 1.47012 * 110.99894 * 293.63027 * 22 21 20 24 24 C 1.53098 * 109.25943 * 177.60982 * 23 22 21 25 25 O 1.43020 * 109.25535 * 56.85000 * 24 23 22 26 26 C 1.43009 * 113.73707 * 301.32945 * 25 24 23 27 27 C 1.47012 * 111.00039 * 169.99817 * 22 21 20 28 28 H 1.08991 * 109.47403 * 270.04153 * 1 2 3 29 29 H 1.08996 * 109.47621 * 30.05008 * 1 2 3 30 30 H 1.09004 * 109.46319 * 150.04358 * 1 2 3 31 31 H 1.07997 * 126.07094 * 359.92898 * 3 2 1 32 32 H 1.07995 * 125.56628 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.46765 * 275.11204 * 6 5 4 34 34 H 1.09000 * 109.47165 * 35.11658 * 6 5 4 35 35 H 1.09001 * 109.46822 * 155.11476 * 6 5 4 36 36 H 1.09002 * 109.47266 * 24.83629 * 11 10 8 37 37 H 1.08999 * 109.46931 * 144.83758 * 11 10 8 38 38 H 0.97004 * 119.99842 * 180.02562 * 15 14 12 39 39 H 1.08995 * 109.47047 * 150.00076 * 20 10 8 40 40 H 1.09004 * 109.47481 * 30.00086 * 20 10 8 41 41 H 1.08995 * 109.47185 * 60.00135 * 21 20 10 42 42 H 1.08995 * 109.46915 * 299.99750 * 21 20 10 43 43 H 1.08998 * 109.50929 * 297.54837 * 23 22 21 44 44 H 1.09004 * 109.50675 * 57.67796 * 23 22 21 45 45 H 1.08996 * 109.50573 * 296.91831 * 24 23 22 46 46 H 1.09001 * 109.54633 * 176.80698 * 24 23 22 47 47 H 1.09002 * 109.50893 * 298.73208 * 26 25 24 48 48 H 1.09007 * 109.54263 * 178.63195 * 26 25 24 49 49 H 1.08997 * 109.50522 * 302.33178 * 27 22 21 50 50 H 1.09004 * 109.50402 * 62.40689 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6218 0.6930 0.0006 5 7 3.6285 -0.6623 0.0070 6 6 4.8227 -1.5109 0.0159 7 6 2.3263 -1.1089 0.0006 8 6 1.8900 -2.5092 0.0008 9 8 1.6867 -3.0830 1.0546 10 7 1.7142 -3.1605 -1.1660 11 6 2.0721 -2.5101 -2.4290 12 6 0.8488 -1.8619 -3.0245 13 1 -0.0819 -1.8595 -2.4765 14 6 0.9177 -1.2723 -4.2688 15 7 2.0511 -1.2749 -4.9359 16 14 -0.5988 -0.4695 -5.0073 17 1 -0.6469 0.9597 -4.6068 18 1 -0.5392 -0.5669 -6.4879 19 1 -1.8157 -1.1630 -4.5141 20 6 1.1654 -4.5187 -1.1713 21 6 2.3084 -5.5310 -1.0729 22 7 1.7580 -6.8931 -1.0788 23 6 0.9689 -7.1476 0.1351 24 6 0.3663 -8.5530 0.0603 25 8 1.4168 -9.5080 -0.1127 26 6 2.2052 -9.2903 -1.2859 27 6 2.8263 -7.8924 -1.2247 28 1 -0.3634 0.0007 1.0276 29 1 -0.3634 0.8895 -0.5146 30 1 -0.3632 -0.8905 -0.5132 31 1 2.0135 2.1549 -0.0011 32 1 4.4972 1.3254 0.0011 33 1 5.1761 -1.6514 -1.0056 34 1 5.6033 -1.0333 0.6080 35 1 4.5771 -2.4792 0.4520 36 1 2.8320 -1.7508 -2.2441 37 1 2.4632 -3.2542 -3.1228 38 1 2.0996 -0.8597 -5.8113 39 1 0.6126 -4.6836 -2.0960 40 1 0.4955 -4.6433 -0.3204 41 1 2.8612 -5.3662 -0.1482 42 1 2.9782 -5.4065 -1.9238 43 1 1.6139 -7.0743 1.0107 44 1 0.1681 -6.4118 0.2096 45 1 -0.3202 -8.6102 -0.7844 46 1 -0.1729 -8.7683 0.9828 47 1 1.5721 -9.3690 -2.1697 48 1 2.9965 -10.0383 -1.3374 49 1 3.3816 -7.7002 -2.1427 50 1 3.5016 -7.8304 -0.3713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189505790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:12 Heat of formation + Delta-G solvation = -19.971660 kcal Electronic energy + Delta-G solvation = -30622.081159 eV Core-core repulsion = 26650.594483 eV Total energy + Delta-G solvation = -3971.486676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.85301 -39.61839 -38.54963 -36.10522 -34.81502 -33.19856 -32.56221 -31.27939 -30.32828 -29.36284 -27.75927 -27.25694 -25.84697 -24.67739 -24.07046 -23.04600 -22.48101 -20.59676 -20.30792 -19.58221 -17.85138 -16.87513 -16.63370 -16.47808 -16.16304 -15.86651 -15.20834 -15.12695 -15.03374 -14.67603 -14.58955 -14.35404 -14.01765 -13.80578 -13.05564 -12.97672 -12.91243 -12.70536 -12.51423 -12.32788 -12.31336 -12.22270 -11.97081 -11.52985 -11.50539 -11.45073 -11.44232 -11.26184 -11.00690 -10.92249 -10.73827 -10.69761 -10.40045 -10.14228 -9.83708 -9.65691 -9.36377 -8.51986 -8.38427 -7.97351 -7.83444 -7.38963 -6.13443 -4.18015 2.54084 2.85772 3.27182 3.33721 3.35487 3.42129 3.56920 3.63405 3.80883 4.20214 4.38952 4.82275 4.96748 4.98618 4.99957 5.09401 5.19252 5.21941 5.27463 5.37318 5.41443 5.49226 5.51618 5.54931 5.59875 5.61459 5.73168 5.79618 5.84892 5.90057 5.92336 5.94085 6.19801 6.25487 6.32990 6.39348 6.62736 6.64510 6.68969 6.93371 6.95636 6.99564 7.07125 7.16604 7.45060 7.48520 7.63642 7.79547 7.80297 8.08814 8.22170 8.74941 8.91110 9.48245 10.94553 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.004052 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.924256 B = 6908.002927 C = 8352.677853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.104 4.104 3 C -0.199 4.199 4 C -0.007 4.007 5 N -0.427 5.427 6 C 0.074 3.926 7 C -0.011 4.011 8 C 0.589 3.411 9 O -0.564 6.564 10 N -0.581 5.581 11 C 0.241 3.759 12 C -0.524 4.524 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.126 3.874 21 C 0.045 3.955 22 N -0.532 5.532 23 C 0.015 3.985 24 C 0.064 3.936 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.263 0.737 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 -6.757 7.366 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C -0.224 4.224 4 C -0.139 4.139 5 N -0.103 5.103 6 C -0.068 4.068 7 C -0.123 4.123 8 C 0.376 3.624 9 O -0.444 6.444 10 N -0.311 5.311 11 C 0.122 3.878 12 C -0.562 4.562 13 H 0.080 0.920 14 C -0.135 4.135 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.198 1.198 20 C 0.002 3.998 21 C -0.083 4.083 22 N -0.258 5.258 23 C -0.113 4.113 24 C -0.013 4.013 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.151 0.849 32 H 0.176 0.824 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.444 -7.454 7.425 11.070 hybrid contribution -0.031 1.046 -0.299 1.088 sum 3.413 -6.408 7.126 10.173 Atomic orbital electron populations 1.20141 0.90371 1.02681 1.00391 1.19515 0.95018 0.90793 1.05813 1.20535 0.91851 0.98102 1.11883 1.21603 0.98994 0.82467 1.10829 1.43632 1.04841 1.06072 1.55707 1.21995 0.86214 0.95213 1.03352 1.19834 0.83576 0.93552 1.15381 1.17224 0.77669 0.83946 0.83608 1.90731 1.53903 1.68014 1.31783 1.48277 1.60630 1.14040 1.08147 1.19446 0.96795 0.92956 0.78622 1.21352 0.96480 1.36321 1.02079 0.92044 1.24862 0.96121 0.95843 0.96671 1.69913 1.25108 1.44556 1.13741 0.86562 0.83188 0.80024 0.78148 1.20399 1.21258 1.19760 1.21227 0.94766 0.80374 1.03466 1.22486 0.97794 0.87125 1.00928 1.62134 1.23526 1.02570 1.37522 1.22846 0.98866 0.98231 0.91396 1.22686 0.89398 0.87092 1.02083 1.87951 1.45834 1.52321 1.44695 1.22646 0.94830 0.95401 0.88333 1.22766 0.93566 0.92773 1.01893 0.92814 0.92001 0.91598 0.84863 0.82377 0.90543 0.90053 0.90389 0.94528 0.94590 0.92727 0.89044 0.91044 0.94660 0.90369 0.93934 0.89044 0.92146 0.88583 0.92155 0.88685 0.89549 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.20 36.00 0.37 -1.11 16 2 C -0.10 -2.11 6.21 -104.16 -0.65 -2.76 16 3 C -0.20 -3.56 10.76 -39.98 -0.43 -3.99 16 4 C -0.01 -0.12 11.38 -16.91 -0.19 -0.31 16 5 N -0.43 -7.62 3.02 -120.23 -0.36 -7.99 16 6 C 0.07 1.03 10.98 59.85 0.66 1.69 16 7 C -0.01 -0.22 4.76 -81.98 -0.39 -0.61 16 8 C 0.59 12.65 6.43 -12.85 -0.08 12.57 16 9 O -0.56 -12.94 16.75 5.19 0.09 -12.85 16 10 N -0.58 -12.13 2.46 -176.61 -0.43 -12.56 16 11 C 0.24 5.70 5.01 -5.19 -0.03 5.68 16 12 C -0.52 -13.53 9.38 -34.44 -0.32 -13.85 16 13 H 0.06 1.61 7.09 -52.48 -0.37 1.24 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -24.75 13.29 55.43 0.74 -24.02 16 16 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.13 2.30 5.32 -4.04 -0.02 2.28 16 21 C 0.05 0.72 5.28 -3.82 -0.02 0.70 16 22 N -0.53 -7.49 4.73 -234.31 -1.11 -8.60 16 23 C 0.01 0.20 5.44 -3.71 -0.02 0.18 16 24 C 0.06 0.74 7.01 37.21 0.26 1.00 16 25 O -0.39 -4.92 10.83 -35.23 -0.38 -5.31 16 26 C 0.06 0.70 7.01 37.20 0.26 0.96 16 27 C 0.02 0.22 5.64 -3.72 -0.02 0.20 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.35 7.23 -51.93 -0.38 0.98 16 31 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.13 7.68 -51.93 -0.40 0.73 16 36 H 0.04 0.93 6.69 -51.93 -0.35 0.58 16 37 H 0.04 0.90 8.11 -51.93 -0.42 0.47 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.09 1.73 8.07 -51.93 -0.42 1.31 16 40 H 0.07 1.31 5.88 -51.93 -0.31 1.01 16 41 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 42 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 50 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -31.38 405.40 -9.54 -40.92 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.44 Total: 4.22 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.73 Total: 4.32 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -1.17 Total: -53.16 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.29 Total: -18.16 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.38 -9.54 -40.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189505790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.950 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds