Wall clock time and date at job start Tue Mar 31 2020 19:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39838 * 126.45371 * 2 1 4 4 C 1.35457 * 107.86626 * 179.97438 * 3 2 1 5 5 N 1.35538 * 108.87042 * 359.72876 * 4 3 2 6 6 C 1.46499 * 125.67821 * 180.30099 * 5 4 3 7 7 C 1.37660 * 108.64206 * 0.43951 * 5 4 3 8 8 C 1.46670 * 126.23173 * 179.82836 * 7 5 4 9 9 O 1.21699 * 120.00047 * 90.93832 * 8 7 5 10 10 N 1.34783 * 120.00177 * 270.93660 * 8 7 5 11 11 C 1.46496 * 119.99676 * 5.43099 * 10 8 7 12 12 C 1.50702 * 109.47291 * 264.83731 * 11 10 8 13 13 H 1.08003 * 119.99473 * 4.89160 * 12 11 10 14 14 C 1.37870 * 120.00210 * 184.89910 * 12 11 10 15 15 N 1.31514 * 120.00040 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99972 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46701 * 89.99801 * 16 14 12 18 18 H 1.48498 * 109.46919 * 209.99438 * 16 14 12 19 19 H 1.48493 * 109.46856 * 329.99857 * 16 14 12 20 20 C 1.46494 * 120.00009 * 185.43141 * 10 8 7 21 21 C 1.53006 * 109.46987 * 270.00025 * 20 10 8 22 22 N 1.46904 * 109.46792 * 180.02562 * 21 20 10 23 23 C 1.47012 * 110.99894 * 293.63027 * 22 21 20 24 24 C 1.53098 * 109.25943 * 177.60982 * 23 22 21 25 25 O 1.43020 * 109.25535 * 56.85000 * 24 23 22 26 26 C 1.43009 * 113.73707 * 301.32945 * 25 24 23 27 27 C 1.47012 * 111.00039 * 169.99817 * 22 21 20 28 28 H 1.08991 * 109.47403 * 270.04153 * 1 2 3 29 29 H 1.08996 * 109.47621 * 30.05008 * 1 2 3 30 30 H 1.09004 * 109.46319 * 150.04358 * 1 2 3 31 31 H 1.07997 * 126.07094 * 359.92898 * 3 2 1 32 32 H 1.07995 * 125.56628 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.46765 * 275.11204 * 6 5 4 34 34 H 1.09000 * 109.47165 * 35.11658 * 6 5 4 35 35 H 1.09001 * 109.46822 * 155.11476 * 6 5 4 36 36 H 1.09002 * 109.47266 * 24.83629 * 11 10 8 37 37 H 1.08999 * 109.46931 * 144.83758 * 11 10 8 38 38 H 0.97004 * 119.99842 * 180.02562 * 15 14 12 39 39 H 1.08995 * 109.47047 * 150.00076 * 20 10 8 40 40 H 1.09004 * 109.47481 * 30.00086 * 20 10 8 41 41 H 1.08995 * 109.47185 * 60.00135 * 21 20 10 42 42 H 1.08995 * 109.46915 * 299.99750 * 21 20 10 43 43 H 1.08998 * 109.50929 * 297.54837 * 23 22 21 44 44 H 1.09004 * 109.50675 * 57.67796 * 23 22 21 45 45 H 1.08996 * 109.50573 * 296.91831 * 24 23 22 46 46 H 1.09001 * 109.54633 * 176.80698 * 24 23 22 47 47 H 1.09002 * 109.50893 * 298.73208 * 26 25 24 48 48 H 1.09007 * 109.54263 * 178.63195 * 26 25 24 49 49 H 1.08997 * 109.50522 * 302.33178 * 27 22 21 50 50 H 1.09004 * 109.50402 * 62.40689 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6218 0.6930 0.0006 5 7 3.6285 -0.6623 0.0070 6 6 4.8227 -1.5109 0.0159 7 6 2.3263 -1.1089 0.0006 8 6 1.8900 -2.5092 0.0008 9 8 1.6867 -3.0830 1.0546 10 7 1.7142 -3.1605 -1.1660 11 6 2.0721 -2.5101 -2.4290 12 6 0.8488 -1.8619 -3.0245 13 1 -0.0819 -1.8595 -2.4765 14 6 0.9177 -1.2723 -4.2688 15 7 2.0511 -1.2749 -4.9359 16 14 -0.5988 -0.4695 -5.0073 17 1 -0.6469 0.9597 -4.6068 18 1 -0.5392 -0.5669 -6.4879 19 1 -1.8157 -1.1630 -4.5141 20 6 1.1654 -4.5187 -1.1713 21 6 2.3084 -5.5310 -1.0729 22 7 1.7580 -6.8931 -1.0788 23 6 0.9689 -7.1476 0.1351 24 6 0.3663 -8.5530 0.0603 25 8 1.4168 -9.5080 -0.1127 26 6 2.2052 -9.2903 -1.2859 27 6 2.8263 -7.8924 -1.2247 28 1 -0.3634 0.0007 1.0276 29 1 -0.3634 0.8895 -0.5146 30 1 -0.3632 -0.8905 -0.5132 31 1 2.0135 2.1549 -0.0011 32 1 4.4972 1.3254 0.0011 33 1 5.1761 -1.6514 -1.0056 34 1 5.6033 -1.0333 0.6080 35 1 4.5771 -2.4792 0.4520 36 1 2.8320 -1.7508 -2.2441 37 1 2.4632 -3.2542 -3.1228 38 1 2.0996 -0.8597 -5.8113 39 1 0.6126 -4.6836 -2.0960 40 1 0.4955 -4.6433 -0.3204 41 1 2.8612 -5.3662 -0.1482 42 1 2.9782 -5.4065 -1.9238 43 1 1.6139 -7.0743 1.0107 44 1 0.1681 -6.4118 0.2096 45 1 -0.3202 -8.6102 -0.7844 46 1 -0.1729 -8.7683 0.9828 47 1 1.5721 -9.3690 -2.1697 48 1 2.9965 -10.0383 -1.3374 49 1 3.3816 -7.7002 -2.1427 50 1 3.5016 -7.8304 -0.3713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189505790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:11 Heat of formation + Delta-G solvation = -39.295074 kcal Electronic energy + Delta-G solvation = -30622.919085 eV Core-core repulsion = 26650.594483 eV Total energy + Delta-G solvation = -3972.324602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.27808 -40.74089 -40.06534 -37.43346 -36.40304 -34.57016 -34.48669 -32.27398 -31.71491 -30.73438 -29.32319 -28.86706 -27.14626 -26.00747 -25.10863 -24.93330 -23.82916 -22.00121 -21.40727 -20.96130 -19.44056 -18.57032 -18.24293 -17.93644 -17.34380 -17.07122 -16.71521 -16.29254 -16.12988 -16.02375 -15.98669 -15.86348 -15.44000 -15.07724 -14.49047 -14.35704 -14.30671 -14.12700 -14.09504 -13.86713 -13.60441 -13.51901 -13.43206 -13.11212 -12.87094 -12.81329 -12.79225 -12.65551 -12.53516 -12.39050 -12.34363 -12.13871 -11.83808 -11.71818 -11.51594 -11.08598 -10.73170 -10.56766 -9.67324 -9.47849 -9.32773 -8.83951 -8.17418 -6.28001 1.10805 1.29896 1.42019 1.44341 1.52608 1.97335 2.12847 2.33318 2.44441 2.81635 2.96049 3.15663 3.66175 3.78202 3.88997 3.90791 3.95307 4.07716 4.16113 4.27312 4.28763 4.31876 4.34885 4.39529 4.43906 4.52008 4.53347 4.55445 4.68215 4.71657 4.78669 4.81454 4.86643 4.87003 4.89801 4.91948 4.99432 5.13622 5.18709 5.25705 5.51199 5.60136 5.74787 5.84582 5.88565 6.06175 6.09105 6.14075 6.18985 6.44046 6.53163 6.79023 7.12805 7.41992 8.89687 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.004052 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.924256 B = 6908.002927 C = 8352.677853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.127 4.127 3 C -0.220 4.220 4 C 0.009 3.991 5 N -0.431 5.431 6 C 0.070 3.930 7 C -0.053 4.053 8 C 0.592 3.408 9 O -0.586 6.586 10 N -0.581 5.581 11 C 0.264 3.736 12 C -0.528 4.528 13 H 0.052 0.948 14 C 0.026 3.974 15 N -0.922 5.922 16 Si 0.948 3.052 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.127 3.873 21 C 0.063 3.937 22 N -0.537 5.537 23 C 0.015 3.985 24 C 0.068 3.932 25 O -0.402 6.402 26 C 0.066 3.934 27 C 0.017 3.983 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.156 0.844 32 H 0.203 0.797 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.022 0.978 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.116 0.884 47 H 0.064 0.936 48 H 0.120 0.880 49 H 0.096 0.904 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 -6.463 7.367 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.135 4.135 3 C -0.244 4.244 4 C -0.124 4.124 5 N -0.107 5.107 6 C -0.071 4.071 7 C -0.166 4.166 8 C 0.380 3.620 9 O -0.468 6.468 10 N -0.310 5.310 11 C 0.143 3.857 12 C -0.567 4.567 13 H 0.070 0.930 14 C -0.174 4.174 15 N -0.562 5.562 16 Si 0.774 3.226 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.194 1.194 20 C 0.004 3.996 21 C -0.066 4.066 22 N -0.263 5.263 23 C -0.113 4.113 24 C -0.008 4.008 25 O -0.321 6.321 26 C -0.011 4.011 27 C -0.111 4.111 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.173 0.827 32 H 0.220 0.780 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.134 0.866 47 H 0.083 0.917 48 H 0.138 0.862 49 H 0.114 0.886 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.946 -7.190 7.430 11.066 hybrid contribution -0.150 0.958 -0.270 1.006 sum 3.796 -6.232 7.159 10.223 Atomic orbital electron populations 1.20118 0.90226 1.01843 1.01078 1.19925 0.95717 0.91789 1.06034 1.20894 0.92226 0.98599 1.12672 1.22353 1.00143 0.82166 1.07721 1.43945 1.04742 1.07059 1.54918 1.22224 0.85854 0.94842 1.04164 1.19842 0.85403 0.93032 1.18312 1.17395 0.77030 0.84441 0.83153 1.90697 1.54983 1.68789 1.32292 1.48215 1.60616 1.14870 1.07325 1.18995 0.95622 0.91979 0.79102 1.21504 0.96691 1.36287 1.02176 0.92964 1.25514 0.98488 0.96326 0.97050 1.69999 1.26666 1.45411 1.14092 0.85697 0.80278 0.79161 0.77485 1.20045 1.20778 1.19402 1.21271 0.95568 0.79934 1.02806 1.22194 0.96456 0.87953 1.00030 1.62154 1.24276 1.01862 1.37987 1.22871 0.98372 0.99530 0.90529 1.22743 0.89181 0.85544 1.03381 1.87939 1.46192 1.52496 1.45487 1.22790 0.95377 0.94989 0.87930 1.22878 0.93097 0.92975 1.02176 0.91399 0.90838 0.94233 0.82669 0.77984 0.90418 0.85931 0.91591 0.95970 0.96103 0.92602 0.89881 0.91280 0.95957 0.90670 0.95100 0.89697 0.91603 0.86643 0.91738 0.86165 0.88593 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.86 10.20 71.24 0.73 -2.13 16 2 C -0.13 -5.13 6.21 -19.56 -0.12 -5.25 16 3 C -0.22 -7.52 10.76 22.01 0.24 -7.29 16 4 C 0.01 0.27 11.38 83.48 0.95 1.22 16 5 N -0.43 -14.96 3.02 -534.31 -1.61 -16.58 16 6 C 0.07 1.86 10.98 127.77 1.40 3.26 16 7 C -0.05 -2.22 4.76 40.34 0.19 -2.03 16 8 C 0.59 26.20 6.43 86.44 0.56 26.75 16 9 O -0.59 -27.72 16.75 -4.35 -0.07 -27.79 16 10 N -0.58 -25.11 2.46 -830.88 -2.04 -27.15 16 11 C 0.26 12.80 5.01 85.63 0.43 13.23 16 12 C -0.53 -27.73 9.38 25.60 0.24 -27.49 16 13 H 0.05 2.80 7.09 -2.91 -0.02 2.78 16 14 C 0.03 1.38 5.46 84.65 0.46 1.85 16 15 N -0.92 -51.17 13.29 21.44 0.28 -50.88 16 16 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 C 0.13 4.84 5.32 86.38 0.46 5.30 16 21 C 0.06 2.06 5.28 86.30 0.46 2.52 16 22 N -0.54 -15.14 4.73 -895.23 -4.23 -19.38 16 23 C 0.02 0.40 5.44 86.31 0.47 0.87 16 24 C 0.07 1.49 7.01 72.01 0.50 1.99 16 25 O -0.40 -9.56 10.83 -148.98 -1.61 -11.17 16 26 C 0.07 1.31 7.01 72.01 0.50 1.81 16 27 C 0.02 0.39 5.64 86.31 0.49 0.88 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 30 H 0.04 1.66 7.23 -2.38 -0.02 1.65 16 31 H 0.16 4.44 8.06 -2.91 -0.02 4.41 16 32 H 0.20 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 1.90 7.68 -2.39 -0.02 1.88 16 36 H 0.02 1.15 6.69 -2.39 -0.02 1.14 16 37 H 0.02 1.07 8.11 -2.39 -0.02 1.05 16 38 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 39 H 0.08 3.27 8.07 -2.39 -0.02 3.25 16 40 H 0.07 2.65 5.88 -2.38 -0.01 2.63 16 41 H 0.02 0.79 8.12 -2.39 -0.02 0.77 16 42 H 0.07 2.50 8.04 -2.39 -0.02 2.48 16 43 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 2.33 6.38 -2.39 -0.02 2.31 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 48 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 49 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 50 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -67.93 405.40 1.60 -66.32 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.91 Total: 26.66 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 7.95 Total: 15.49 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -7.60 Total: -113.99 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -1.69 Total: -38.96 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.93 1.60 -66.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189505790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.029 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds