Wall clock time and date at job start Tue Mar 31 2020 20:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30838 * 125.89450 * 2 1 4 4 N 1.40091 * 108.19972 * 180.26043 * 3 2 1 5 5 C 1.46505 * 126.03679 * 179.70168 * 4 3 2 6 6 C 1.50705 * 109.46832 * 270.02435 * 5 4 3 7 7 H 1.07997 * 119.99640 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99793 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99904 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99702 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47173 * 90.00576 * 10 8 6 12 12 H 1.48503 * 109.46949 * 209.99998 * 10 8 6 13 13 H 1.48495 * 109.47389 * 330.00159 * 10 8 6 14 14 C 1.34943 * 107.92752 * 359.72142 * 4 3 2 15 15 C 1.50704 * 126.12940 * 180.02562 * 14 4 3 16 16 C 1.35319 * 107.74852 * 359.97438 * 14 4 3 17 17 C 1.50696 * 126.04502 * 179.97438 * 16 14 4 18 18 C 1.53004 * 109.46661 * 90.00294 * 17 16 14 19 19 C 1.50706 * 109.46665 * 180.02562 * 18 17 16 20 20 O 1.21273 * 120.00397 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99581 * 180.02562 * 19 18 17 22 22 C 1.46926 * 120.63336 * 0.02562 * 21 19 18 23 23 C 1.53191 * 108.89109 * 233.68039 * 22 21 19 24 24 C 1.53035 * 109.31327 * 305.29292 * 23 22 21 25 25 C 1.53038 * 109.54175 * 61.36680 * 24 23 22 26 26 H 1.09000 * 109.49410 * 58.61748 * 25 24 23 27 27 O 1.42896 * 109.49862 * 178.68300 * 25 24 23 28 28 C 1.47207 * 120.81118 * 180.14557 * 21 19 18 29 29 H 1.09003 * 109.47382 * 270.20627 * 1 2 3 30 30 H 1.08996 * 109.47497 * 30.21201 * 1 2 3 31 31 H 1.09005 * 109.47470 * 150.21217 * 1 2 3 32 32 H 1.09004 * 109.46633 * 30.01832 * 5 4 3 33 33 H 1.08996 * 109.47382 * 150.02240 * 5 4 3 34 34 H 0.97001 * 119.99615 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46765 * 269.97349 * 15 14 4 36 36 H 1.08996 * 109.47039 * 29.96690 * 15 14 4 37 37 H 1.08999 * 109.47332 * 149.97612 * 15 14 4 38 38 H 1.09001 * 109.46797 * 330.01174 * 17 16 14 39 39 H 1.08996 * 109.47721 * 210.00693 * 17 16 14 40 40 H 1.09001 * 109.46796 * 60.00880 * 18 17 16 41 41 H 1.08994 * 109.47593 * 300.00107 * 18 17 16 42 42 H 1.09002 * 109.58861 * 113.82042 * 22 21 19 43 43 H 1.08996 * 109.58519 * 353.53933 * 22 21 19 44 44 H 1.09003 * 109.49975 * 65.24379 * 23 22 21 45 45 H 1.09000 * 109.49553 * 185.30642 * 23 22 21 46 46 H 1.09003 * 109.46332 * 181.39145 * 24 23 22 47 47 H 1.09004 * 109.45942 * 301.34050 * 24 23 22 48 48 H 0.96704 * 113.99789 * 179.97438 * 27 25 24 49 49 H 1.08996 * 109.53610 * 6.53286 * 28 21 19 50 50 H 1.09002 * 109.68003 * 246.22753 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 6 4.7899 1.5008 -0.0143 6 6 5.1870 1.7952 -1.4379 7 1 4.6168 1.3780 -2.2548 8 6 6.2781 2.5970 -1.6975 9 7 6.9727 3.1045 -0.7027 10 14 6.7708 2.9612 -3.4621 11 1 6.0726 4.1862 -3.9282 12 1 8.2392 3.1713 -3.5328 13 1 6.3923 1.8160 -4.3282 14 6 3.6142 -0.7153 -0.0034 15 6 4.8350 -1.5989 -0.0074 16 6 2.3271 -1.1330 0.0046 17 6 1.8599 -2.5657 0.0095 18 6 1.7100 -3.0482 1.4537 19 6 1.2433 -4.4812 1.4586 20 8 1.0501 -5.0597 0.4104 21 7 1.0407 -5.1199 2.6280 22 6 1.2698 -4.4323 3.9061 23 6 2.2284 -5.2720 4.7562 24 6 1.6686 -6.6890 4.8998 25 6 1.5547 -7.3369 3.5180 26 1 2.5364 -7.3595 3.0448 27 8 1.0608 -8.6707 3.6557 28 6 0.5880 -6.5204 2.6538 29 1 -0.3634 0.0037 1.0277 30 1 -0.3634 0.8880 -0.5171 31 1 -0.3634 -0.8919 -0.5105 32 1 4.5590 2.4343 0.4990 33 1 5.6121 0.9993 0.4960 34 1 7.7406 3.6683 -0.8853 35 1 5.1242 -1.8143 -1.0361 36 1 5.6537 -1.0897 0.5010 37 1 4.6101 -2.5317 0.5096 38 1 2.5905 -3.1879 -0.5074 39 1 0.8982 -2.6361 -0.4988 40 1 0.9793 -2.4261 1.9706 41 1 2.6716 -2.9780 1.9620 42 1 0.3227 -4.3140 4.4324 43 1 1.7093 -3.4523 3.7201 44 1 3.2037 -5.3136 4.2711 45 1 2.3317 -4.8194 5.7424 46 1 2.3365 -7.2818 5.5248 47 1 0.6827 -6.6448 5.3625 48 1 0.9629 -9.1424 2.8173 49 1 0.5787 -6.9191 1.6394 50 1 -0.4151 -6.5742 3.0767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192675188.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:44 Heat of formation + Delta-G solvation = -59.758352 kcal Electronic energy + Delta-G solvation = -29187.108416 eV Core-core repulsion = 25213.896460 eV Total energy + Delta-G solvation = -3973.211956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.16031 -41.22508 -39.03599 -36.81615 -36.10076 -34.88952 -34.19199 -33.43846 -31.97510 -30.89500 -30.40411 -28.23566 -27.61395 -26.53222 -25.07807 -24.10057 -23.62974 -21.71726 -20.31864 -20.18094 -19.85174 -18.82185 -18.42608 -17.96528 -17.26128 -17.02445 -16.66923 -16.25466 -16.00966 -15.78743 -15.51648 -14.95867 -14.89458 -14.61614 -14.38847 -14.31787 -14.07535 -14.00906 -13.74749 -13.61424 -13.53207 -13.34034 -13.22495 -13.18657 -12.91349 -12.82864 -12.76489 -12.61939 -12.57908 -12.22789 -12.04740 -11.97098 -11.86559 -11.70113 -11.52406 -11.22539 -11.14808 -10.77811 -10.75689 -9.83223 -9.63948 -9.02124 -8.35297 -6.52803 1.17941 1.35077 1.36490 1.47482 1.62944 1.82153 1.95323 2.06179 2.32714 2.94229 3.24584 3.54290 3.80364 3.85156 3.92115 3.96787 3.98835 4.08892 4.21337 4.23198 4.26349 4.34603 4.47338 4.57138 4.64678 4.65903 4.70826 4.73190 4.76632 4.78751 4.85437 4.87892 4.90272 4.93689 4.96583 5.04382 5.07499 5.14008 5.14612 5.30855 5.34888 5.44567 5.49263 5.50657 5.56910 5.80256 6.06135 6.32162 6.36297 6.62343 6.76165 7.12438 7.17115 7.18551 8.70643 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.002299 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.885478 B =12176.229756 C =12579.806889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.276 3.724 6 C -0.552 4.552 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.970 3.030 11 H -0.275 1.275 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.079 3.921 15 C -0.083 4.083 16 C -0.257 4.257 17 C -0.004 4.004 18 C -0.123 4.123 19 C 0.518 3.482 20 O -0.581 6.581 21 N -0.610 5.610 22 C 0.096 3.904 23 C -0.129 4.129 24 C -0.113 4.113 25 C 0.097 3.903 26 H 0.052 0.948 27 O -0.576 6.576 28 C 0.082 3.918 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.048 0.952 34 H 0.274 0.726 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.105 0.895 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.395 0.605 49 H 0.078 0.922 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.355 -20.416 12.327 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.173 5.173 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.064 0.936 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.793 3.207 11 H -0.200 1.200 12 H -0.193 1.193 13 H -0.195 1.195 14 C -0.051 4.051 15 C -0.141 4.141 16 C -0.269 4.269 17 C -0.043 4.043 18 C -0.162 4.162 19 C 0.308 3.692 20 O -0.461 6.461 21 N -0.344 5.344 22 C -0.026 4.026 23 C -0.167 4.167 24 C -0.151 4.151 25 C 0.037 3.963 26 H 0.070 0.930 27 O -0.384 6.384 28 C -0.041 4.041 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.245 0.755 49 H 0.096 0.904 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.119 -19.062 12.478 25.351 hybrid contribution 0.590 -0.251 -1.562 1.688 sum -10.529 -19.312 10.916 24.556 Atomic orbital electron populations 1.20210 0.84733 1.03390 1.03813 1.22772 0.98101 0.90186 0.99938 1.77219 0.87789 1.24994 1.27347 1.49004 1.05344 1.05159 1.54034 1.19124 0.79051 0.88752 0.97451 1.21427 1.13419 1.32362 0.91862 0.93564 1.25729 0.95413 0.94493 1.02245 1.69997 1.19303 1.33198 1.33087 0.85380 0.77892 0.78644 0.78736 1.20027 1.19344 1.19503 1.21440 0.98153 0.84674 1.00787 1.20435 0.92313 0.97895 1.03418 1.19681 0.90338 0.96413 1.20428 1.19360 1.01259 0.88450 0.95219 1.21665 1.04154 0.90993 0.99420 1.21127 0.75934 0.89459 0.82685 1.90671 1.53482 1.69262 1.32666 1.48218 1.66889 1.12655 1.06684 1.22087 1.00892 0.96722 0.82850 1.21899 0.98772 0.94254 1.01757 1.21509 1.02748 0.95904 0.94909 1.22093 0.95267 0.81961 0.97007 0.92985 1.86487 1.88547 1.26009 1.37314 1.22333 0.98593 0.81639 1.01509 0.88953 0.91745 0.89132 0.96258 0.93448 0.91726 0.90700 0.91762 0.87578 0.91957 0.91171 0.87218 0.87712 0.89478 0.87983 0.91535 0.87685 0.90836 0.90694 0.75525 0.90363 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.63 10.26 71.23 0.73 -0.90 16 2 C 0.05 2.01 7.22 43.10 0.31 2.32 16 3 N -0.35 -16.23 12.58 -47.38 -0.60 -16.83 16 4 N -0.36 -16.89 3.60 -338.38 -1.22 -18.10 16 5 C 0.28 14.66 6.00 85.63 0.51 15.17 16 6 C -0.55 -31.41 9.39 25.60 0.24 -31.17 16 7 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 8 C 0.02 1.23 5.46 84.65 0.46 1.69 16 9 N -0.92 -52.21 13.29 21.45 0.28 -51.93 16 10 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.08 3.09 6.93 41.41 0.29 3.37 16 15 C -0.08 -2.62 9.72 71.24 0.69 -1.93 16 16 C -0.26 -8.71 5.35 -20.14 -0.11 -8.82 16 17 C 0.00 -0.10 4.41 29.85 0.13 0.03 16 18 C -0.12 -2.41 4.03 29.85 0.12 -2.29 16 19 C 0.52 11.20 7.70 87.66 0.68 11.87 16 20 O -0.58 -17.14 15.41 -3.01 -0.05 -17.19 16 21 N -0.61 -9.75 2.98 -818.12 -2.44 -12.19 16 22 C 0.10 0.96 6.33 86.36 0.55 1.51 16 23 C -0.13 -1.10 6.08 30.67 0.19 -0.92 16 24 C -0.11 -1.23 5.53 30.62 0.17 -1.06 16 25 C 0.10 1.30 3.62 30.68 0.11 1.41 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 O -0.58 -7.89 13.32 -148.98 -1.98 -9.87 16 28 C 0.08 1.25 6.07 86.32 0.52 1.78 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.97 7.25 -2.38 -0.02 1.95 16 32 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.05 2.49 7.05 -2.39 -0.02 2.48 16 34 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.06 2.13 7.08 -2.39 -0.02 2.11 16 37 H 0.11 2.53 7.78 -2.39 -0.02 2.51 16 38 H 0.06 1.73 7.73 -2.39 -0.02 1.71 16 39 H 0.07 1.86 7.20 -2.39 -0.02 1.85 16 40 H 0.11 1.82 7.94 -2.39 -0.02 1.80 16 41 H 0.10 1.82 7.70 -2.39 -0.02 1.80 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.10 0.89 5.93 -2.39 -0.01 0.88 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.39 2.64 9.08 -74.05 -0.67 1.97 16 49 H 0.08 1.44 7.02 -2.39 -0.02 1.42 16 50 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -74.58 403.60 1.89 -72.69 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.27 Total: 15.74 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 5.59 Total: -7.93 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -3.97 Total: -99.05 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -2.03 Total: -27.06 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -74.58 1.89 -72.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192675188.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.932 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds