Wall clock time and date at job start Tue Mar 31 2020 20:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30842 * 125.90256 * 2 1 4 4 N 1.40083 * 108.20401 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03361 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47247 * 90.02768 * 5 4 3 7 7 C 1.53000 * 109.47030 * 65.00179 * 6 5 4 8 8 C 1.52996 * 109.47309 * 185.00156 * 6 5 4 9 9 C 1.34943 * 107.92765 * 359.76205 * 4 3 2 10 10 C 1.50704 * 126.12613 * 180.23684 * 9 4 3 11 11 C 1.35308 * 107.74599 * 0.38569 * 9 4 3 12 12 C 1.50705 * 126.03938 * 179.87037 * 11 9 4 13 13 C 1.50691 * 109.47491 * 269.71686 * 12 11 9 14 14 O 1.21278 * 120.00028 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00407 * 179.97438 * 13 12 11 16 16 C 1.47575 * 134.49576 * 180.02562 * 15 13 12 17 17 C 1.53952 * 86.11883 * 155.35932 * 16 15 13 18 18 O 1.42896 * 113.73968 * 269.15538 * 17 16 15 19 19 C 1.50696 * 113.74096 * 137.94737 * 17 16 15 20 20 H 1.07999 * 120.00319 * 0.02562 * 19 17 16 21 21 C 1.37885 * 119.99717 * 179.97438 * 19 17 16 22 22 N 1.31516 * 119.99913 * 180.02562 * 21 19 17 23 23 Si 1.86798 * 119.99766 * 0.02562 * 21 19 17 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.47581 * 134.48697 * 359.97438 * 15 13 12 28 28 H 1.09000 * 109.47489 * 270.02786 * 1 2 3 29 29 H 1.09003 * 109.46745 * 30.02637 * 1 2 3 30 30 H 1.09002 * 109.47215 * 150.02143 * 1 2 3 31 31 H 1.09001 * 109.47135 * 210.02695 * 5 4 3 32 32 H 1.09002 * 109.47147 * 330.02947 * 5 4 3 33 33 H 1.09002 * 109.47201 * 304.99869 * 6 5 4 34 34 H 1.09004 * 109.47402 * 180.02562 * 7 6 5 35 35 H 1.09011 * 109.47150 * 300.00091 * 7 6 5 36 36 H 1.08992 * 109.47464 * 59.99913 * 7 6 5 37 37 H 1.08998 * 109.47398 * 59.99831 * 8 6 5 38 38 H 1.09006 * 109.47277 * 180.02562 * 8 6 5 39 39 H 1.09004 * 109.47178 * 299.99678 * 8 6 5 40 40 H 1.09003 * 109.47279 * 270.17779 * 10 9 4 41 41 H 1.09000 * 109.46966 * 30.17667 * 10 9 4 42 42 H 1.08998 * 109.47509 * 150.17554 * 10 9 4 43 43 H 1.09006 * 109.46716 * 149.71452 * 12 11 9 44 44 H 1.09001 * 109.47006 * 29.72076 * 12 11 9 45 45 H 1.08992 * 113.77450 * 41.05752 * 16 15 13 46 46 H 1.09008 * 113.76786 * 269.65747 * 16 15 13 47 47 H 0.96697 * 113.99744 * 178.07719 * 18 17 16 48 48 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 49 49 H 1.09002 * 113.76822 * 90.34347 * 27 15 13 50 50 H 1.08998 * 113.77440 * 318.94601 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5006 0.0013 6 6 5.2008 1.8015 1.4440 7 6 5.6478 0.5077 2.1274 8 6 6.3558 2.8049 1.4467 9 6 3.6141 -0.7154 0.0063 10 6 4.8349 -1.5990 0.0139 11 6 2.3271 -1.1330 0.0005 12 6 1.8598 -2.5658 0.0011 13 6 1.7047 -3.0441 -1.4195 14 8 1.9498 -2.2956 -2.3416 15 7 1.2944 -4.3042 -1.6653 16 6 1.0399 -5.0889 -2.8889 17 6 1.3075 -6.3324 -2.0216 18 8 2.6751 -6.7467 -2.0165 19 6 0.3504 -7.4679 -2.2772 20 1 -0.4313 -7.3597 -3.0146 21 6 0.4733 -8.6454 -1.5704 22 7 -0.3617 -9.6367 -1.7939 23 14 1.8257 -8.8327 -0.2956 24 1 3.0432 -9.3841 -0.9428 25 1 2.1366 -7.5061 0.2949 26 1 1.3724 -9.7570 0.7747 27 6 0.9201 -5.4537 -0.8187 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 5.6095 0.9983 -0.5126 32 1 4.5565 2.4334 -0.5120 33 1 4.3523 2.2229 1.9832 34 1 5.9401 0.7219 3.1555 35 1 4.8248 -0.2073 2.1256 36 1 6.4962 0.0863 1.5884 37 1 6.0375 3.7267 0.9598 38 1 6.6488 3.0190 2.4746 39 1 7.2044 2.3836 0.9076 40 1 5.1345 -1.8138 -1.0119 41 1 5.6484 -1.0902 0.5310 42 1 4.6049 -2.5321 0.5282 43 1 0.9008 -2.6349 0.5146 44 1 2.5930 -3.1869 0.5156 45 1 1.7805 -4.9326 -3.6731 46 1 0.0140 -5.0182 -3.2508 47 1 2.8527 -7.5097 -1.4497 48 1 -0.2750 -10.4652 -1.2969 49 1 -0.1409 -5.4903 -0.5716 50 1 1.5652 -5.5885 0.0494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193138297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:32 Heat of formation + Delta-G solvation = 26.677522 kcal Electronic energy + Delta-G solvation = -29886.048935 eV Core-core repulsion = 25916.585120 eV Total energy + Delta-G solvation = -3969.463815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47009 -39.62952 -37.62072 -36.86646 -34.43697 -33.21481 -32.92975 -32.54698 -29.97810 -29.02130 -28.48718 -27.48432 -26.30077 -25.56096 -25.26663 -24.33324 -20.92708 -20.47018 -19.52988 -19.24141 -18.40874 -17.42337 -16.77309 -16.54572 -16.33818 -15.73710 -15.30592 -15.08728 -14.86176 -14.17802 -13.98230 -13.81896 -13.70829 -13.44316 -13.31356 -13.26199 -13.15308 -12.80608 -12.67842 -12.57605 -12.49406 -12.45553 -12.34681 -12.14652 -12.00618 -11.77144 -11.46805 -11.39723 -11.30712 -11.20875 -11.04028 -10.96241 -10.60113 -10.36204 -10.13577 -9.67925 -9.28144 -8.99979 -8.92972 -8.68990 -8.14237 -7.94876 -6.42519 -4.48225 1.91827 2.47808 2.76863 2.98044 2.99140 3.13405 3.20459 3.59146 4.01964 4.25543 4.36885 4.54199 4.63875 4.65556 4.69197 4.95362 5.00910 5.03620 5.11745 5.18277 5.20332 5.25187 5.27645 5.32377 5.41526 5.45120 5.48284 5.51858 5.63098 5.64300 5.65831 5.72788 5.78593 5.84538 5.91026 5.95054 6.08077 6.08437 6.16137 6.29061 6.29767 6.38011 6.52067 6.62811 6.80238 7.11230 7.20853 7.84515 8.02228 8.37561 8.51414 8.61827 8.76226 9.15153 10.69785 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002770 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.555453 B =10105.198554 C =10813.615487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.091 3.909 3 N -0.302 5.302 4 N -0.370 5.370 5 C 0.139 3.861 6 C -0.113 4.113 7 C -0.156 4.156 8 C -0.145 4.145 9 C 0.102 3.898 10 C -0.105 4.105 11 C -0.213 4.213 12 C -0.055 4.055 13 C 0.530 3.470 14 O -0.550 6.550 15 N -0.637 5.637 16 C 0.127 3.873 17 C 0.195 3.805 18 O -0.553 6.553 19 C -0.535 4.535 20 H 0.091 0.909 21 C 0.079 3.921 22 N -0.877 5.877 23 Si 0.860 3.140 24 H -0.267 1.267 25 H -0.256 1.256 26 H -0.284 1.284 27 C 0.064 3.936 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.350 0.650 48 H 0.270 0.730 49 H 0.094 0.906 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.970 18.206 9.882 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 N -0.124 5.124 4 N -0.151 5.151 5 C 0.017 3.983 6 C -0.133 4.133 7 C -0.213 4.213 8 C -0.202 4.202 9 C -0.024 4.024 10 C -0.163 4.163 11 C -0.224 4.224 12 C -0.096 4.096 13 C 0.319 3.681 14 O -0.429 6.429 15 N -0.372 5.372 16 C 0.005 3.995 17 C 0.154 3.846 18 O -0.364 6.364 19 C -0.573 4.573 20 H 0.109 0.891 21 C -0.126 4.126 22 N -0.512 5.512 23 Si 0.688 3.312 24 H -0.194 1.194 25 H -0.182 1.182 26 H -0.211 1.211 27 C -0.060 4.060 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.202 0.798 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.325 20.476 9.063 24.658 hybrid contribution 0.562 -1.627 1.110 2.049 sum 10.887 18.849 10.173 24.027 Atomic orbital electron populations 1.20158 0.87027 1.03413 1.02504 1.22069 0.96609 0.90199 0.98630 1.77229 0.86193 1.22414 1.26517 1.48240 1.05072 1.03714 1.58104 1.21732 0.84110 0.94838 0.97589 1.21542 0.99258 0.96983 0.95480 1.22098 1.01457 0.97162 1.00588 1.21777 0.97513 0.98528 1.02429 1.20643 0.96584 0.84540 1.00668 1.20748 0.93432 0.98386 1.03776 1.19032 0.91363 0.94637 1.17373 1.19814 1.03011 0.92069 0.94677 1.20244 0.77104 0.79540 0.91181 1.90646 1.51847 1.53868 1.46539 1.50141 1.65131 1.10341 1.11607 1.23248 1.00763 0.86176 0.89315 1.20560 0.80650 0.92423 0.90998 1.86479 1.28394 1.50955 1.70577 1.21247 1.14974 0.96893 1.24193 0.89104 1.25018 0.95670 0.95606 0.96322 1.69860 1.36102 1.04608 1.40660 0.87322 0.82598 0.79049 0.82183 1.19371 1.18182 1.21065 1.24570 1.00699 0.83261 0.97439 0.90682 0.91023 0.90543 0.89212 0.88909 0.90265 0.92276 0.91896 0.92145 0.92273 0.91991 0.92286 0.90130 0.90420 0.89781 0.88695 0.89085 0.90858 0.88978 0.79752 0.91921 0.88783 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.12 36.00 0.36 -0.53 16 2 C 0.09 1.40 7.22 -82.41 -0.59 0.80 16 3 N -0.30 -4.71 12.58 33.67 0.42 -4.29 16 4 N -0.37 -4.97 3.44 -57.14 -0.20 -5.17 16 5 C 0.14 1.32 5.58 -4.04 -0.02 1.30 16 6 C -0.11 -0.88 3.13 -90.62 -0.28 -1.17 16 7 C -0.16 -1.19 7.57 37.16 0.28 -0.90 16 8 C -0.14 -0.82 9.19 37.16 0.34 -0.48 16 9 C 0.10 1.43 5.69 -82.27 -0.47 0.96 16 10 C -0.11 -1.16 9.07 36.01 0.33 -0.84 16 11 C -0.21 -3.27 4.59 -105.05 -0.48 -3.76 16 12 C -0.05 -0.82 5.39 -29.04 -0.16 -0.98 16 13 C 0.53 10.11 8.05 -10.99 -0.09 10.02 16 14 O -0.55 -12.34 16.76 5.56 0.09 -12.24 16 15 N -0.64 -12.48 3.61 -178.33 -0.64 -13.13 16 16 C 0.13 2.63 8.23 -2.97 -0.02 2.61 16 17 C 0.19 4.33 1.06 -90.86 -0.10 4.23 16 18 O -0.55 -12.72 13.32 -35.23 -0.47 -13.19 16 19 C -0.54 -13.57 9.20 -34.44 -0.32 -13.88 16 20 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 21 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.88 -24.20 13.96 55.43 0.77 -23.42 16 23 Si 0.86 18.41 24.34 -169.99 -4.14 14.27 16 24 H -0.27 -5.62 7.06 56.52 0.40 -5.22 16 25 H -0.26 -5.04 5.28 56.52 0.30 -4.74 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.06 1.22 7.20 -2.99 -0.02 1.20 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 31 H 0.09 0.72 7.68 -51.93 -0.40 0.32 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.59 5.86 -51.92 -0.30 0.29 16 36 H 0.06 0.39 6.87 -51.93 -0.36 0.04 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.65 4.39 -51.93 -0.23 0.43 16 42 H 0.08 0.88 7.14 -51.93 -0.37 0.51 16 43 H 0.09 1.25 7.92 -51.93 -0.41 0.84 16 44 H 0.09 1.23 7.14 -51.93 -0.37 0.86 16 45 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 46 H 0.09 1.79 8.09 -51.92 -0.42 1.37 16 47 H 0.35 7.65 3.31 45.56 0.15 7.80 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 50 H 0.07 1.21 6.98 -51.93 -0.36 0.85 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -32.40 393.38 -7.36 -39.76 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.79 Total: 10.95 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.34 Total: 0.53 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.36 Total: -46.01 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.38 Total: -25.43 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.14 Total: 14.27 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.40 -7.36 -39.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.440 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds