Wall clock time and date at job start Tue Mar 31 2020 20:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30842 * 125.90256 * 2 1 4 4 N 1.40083 * 108.20401 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03361 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47247 * 90.02768 * 5 4 3 7 7 C 1.53000 * 109.47030 * 65.00179 * 6 5 4 8 8 C 1.52996 * 109.47309 * 185.00156 * 6 5 4 9 9 C 1.34943 * 107.92765 * 359.76205 * 4 3 2 10 10 C 1.50704 * 126.12613 * 180.23684 * 9 4 3 11 11 C 1.35308 * 107.74599 * 0.38569 * 9 4 3 12 12 C 1.50705 * 126.03938 * 179.87037 * 11 9 4 13 13 C 1.50691 * 109.47491 * 269.71686 * 12 11 9 14 14 O 1.21278 * 120.00028 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00407 * 179.97438 * 13 12 11 16 16 C 1.47575 * 134.49576 * 180.02562 * 15 13 12 17 17 C 1.53952 * 86.11883 * 155.35932 * 16 15 13 18 18 O 1.42896 * 113.73968 * 269.15538 * 17 16 15 19 19 C 1.50696 * 113.74096 * 137.94737 * 17 16 15 20 20 H 1.07999 * 120.00319 * 0.02562 * 19 17 16 21 21 C 1.37885 * 119.99717 * 179.97438 * 19 17 16 22 22 N 1.31516 * 119.99913 * 180.02562 * 21 19 17 23 23 Si 1.86798 * 119.99766 * 0.02562 * 21 19 17 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.47581 * 134.48697 * 359.97438 * 15 13 12 28 28 H 1.09000 * 109.47489 * 270.02786 * 1 2 3 29 29 H 1.09003 * 109.46745 * 30.02637 * 1 2 3 30 30 H 1.09002 * 109.47215 * 150.02143 * 1 2 3 31 31 H 1.09001 * 109.47135 * 210.02695 * 5 4 3 32 32 H 1.09002 * 109.47147 * 330.02947 * 5 4 3 33 33 H 1.09002 * 109.47201 * 304.99869 * 6 5 4 34 34 H 1.09004 * 109.47402 * 180.02562 * 7 6 5 35 35 H 1.09011 * 109.47150 * 300.00091 * 7 6 5 36 36 H 1.08992 * 109.47464 * 59.99913 * 7 6 5 37 37 H 1.08998 * 109.47398 * 59.99831 * 8 6 5 38 38 H 1.09006 * 109.47277 * 180.02562 * 8 6 5 39 39 H 1.09004 * 109.47178 * 299.99678 * 8 6 5 40 40 H 1.09003 * 109.47279 * 270.17779 * 10 9 4 41 41 H 1.09000 * 109.46966 * 30.17667 * 10 9 4 42 42 H 1.08998 * 109.47509 * 150.17554 * 10 9 4 43 43 H 1.09006 * 109.46716 * 149.71452 * 12 11 9 44 44 H 1.09001 * 109.47006 * 29.72076 * 12 11 9 45 45 H 1.08992 * 113.77450 * 41.05752 * 16 15 13 46 46 H 1.09008 * 113.76786 * 269.65747 * 16 15 13 47 47 H 0.96697 * 113.99744 * 178.07719 * 18 17 16 48 48 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 49 49 H 1.09002 * 113.76822 * 90.34347 * 27 15 13 50 50 H 1.08998 * 113.77440 * 318.94601 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5006 0.0013 6 6 5.2008 1.8015 1.4440 7 6 5.6478 0.5077 2.1274 8 6 6.3558 2.8049 1.4467 9 6 3.6141 -0.7154 0.0063 10 6 4.8349 -1.5990 0.0139 11 6 2.3271 -1.1330 0.0005 12 6 1.8598 -2.5658 0.0011 13 6 1.7047 -3.0441 -1.4195 14 8 1.9498 -2.2956 -2.3416 15 7 1.2944 -4.3042 -1.6653 16 6 1.0399 -5.0889 -2.8889 17 6 1.3075 -6.3324 -2.0216 18 8 2.6751 -6.7467 -2.0165 19 6 0.3504 -7.4679 -2.2772 20 1 -0.4313 -7.3597 -3.0146 21 6 0.4733 -8.6454 -1.5704 22 7 -0.3617 -9.6367 -1.7939 23 14 1.8257 -8.8327 -0.2956 24 1 3.0432 -9.3841 -0.9428 25 1 2.1366 -7.5061 0.2949 26 1 1.3724 -9.7570 0.7747 27 6 0.9201 -5.4537 -0.8187 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 5.6095 0.9983 -0.5126 32 1 4.5565 2.4334 -0.5120 33 1 4.3523 2.2229 1.9832 34 1 5.9401 0.7219 3.1555 35 1 4.8248 -0.2073 2.1256 36 1 6.4962 0.0863 1.5884 37 1 6.0375 3.7267 0.9598 38 1 6.6488 3.0190 2.4746 39 1 7.2044 2.3836 0.9076 40 1 5.1345 -1.8138 -1.0119 41 1 5.6484 -1.0902 0.5310 42 1 4.6049 -2.5321 0.5282 43 1 0.9008 -2.6349 0.5146 44 1 2.5930 -3.1869 0.5156 45 1 1.7805 -4.9326 -3.6731 46 1 0.0140 -5.0182 -3.2508 47 1 2.8527 -7.5097 -1.4497 48 1 -0.2750 -10.4652 -1.2969 49 1 -0.1409 -5.4903 -0.5716 50 1 1.5652 -5.5885 0.0494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193138297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:31 Heat of formation + Delta-G solvation = 4.298551 kcal Electronic energy + Delta-G solvation = -29887.019360 eV Core-core repulsion = 25916.585120 eV Total energy + Delta-G solvation = -3970.434240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.49957 -41.22545 -39.17742 -37.62729 -36.16819 -34.50874 -34.12192 -34.01495 -31.26100 -29.89471 -29.87985 -28.12638 -27.59418 -27.01515 -26.67715 -25.43770 -22.09568 -21.60908 -20.78507 -20.17429 -19.90133 -19.26348 -18.14359 -18.01989 -17.66275 -16.79440 -16.55478 -16.33938 -15.90277 -15.49164 -15.36927 -15.05436 -14.81803 -14.80188 -14.53078 -14.35588 -14.13133 -14.02442 -13.97516 -13.74528 -13.63367 -13.45280 -13.32769 -13.13905 -12.90239 -12.85829 -12.69316 -12.62518 -12.49565 -12.38429 -12.05890 -11.93227 -11.89649 -11.66707 -11.42421 -11.37010 -11.06219 -10.79734 -10.42203 -9.94056 -9.57741 -9.21138 -8.38666 -6.51128 0.88949 1.28592 1.32464 1.45211 1.55275 1.63273 1.73916 2.13426 2.22159 2.81605 3.28845 3.46470 3.68864 3.73056 3.77031 3.87253 3.91734 3.96581 4.14314 4.19570 4.30497 4.35009 4.42477 4.46668 4.48764 4.52487 4.55677 4.64258 4.70417 4.72021 4.74803 4.76012 4.77038 4.86248 4.92546 4.93475 4.97161 5.00808 5.03969 5.10625 5.15541 5.25147 5.33702 5.34214 5.36721 5.75540 6.07721 6.17820 6.56423 6.71417 6.79054 6.88667 7.16674 7.26137 8.76828 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002770 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.555453 B =10105.198554 C =10813.615487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.075 3.925 3 N -0.332 5.332 4 N -0.368 5.368 5 C 0.128 3.872 6 C -0.105 4.105 7 C -0.155 4.155 8 C -0.140 4.140 9 C 0.102 3.898 10 C -0.104 4.104 11 C -0.242 4.242 12 C -0.044 4.044 13 C 0.529 3.471 14 O -0.588 6.588 15 N -0.636 5.636 16 C 0.122 3.878 17 C 0.185 3.815 18 O -0.560 6.560 19 C -0.543 4.543 20 H 0.053 0.947 21 C 0.025 3.975 22 N -0.926 5.926 23 Si 0.920 3.080 24 H -0.260 1.260 25 H -0.222 1.222 26 H -0.283 1.283 27 C 0.079 3.921 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.063 0.937 46 H 0.096 0.904 47 H 0.355 0.645 48 H 0.273 0.727 49 H 0.105 0.895 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.309 19.143 12.344 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 N -0.154 5.154 4 N -0.150 5.150 5 C 0.008 3.992 6 C -0.124 4.124 7 C -0.212 4.212 8 C -0.198 4.198 9 C -0.026 4.026 10 C -0.161 4.161 11 C -0.254 4.254 12 C -0.084 4.084 13 C 0.321 3.679 14 O -0.469 6.469 15 N -0.371 5.371 16 C -0.001 4.001 17 C 0.144 3.856 18 O -0.372 6.372 19 C -0.581 4.581 20 H 0.071 0.929 21 C -0.176 4.176 22 N -0.564 5.564 23 Si 0.745 3.255 24 H -0.186 1.186 25 H -0.146 1.146 26 H -0.210 1.210 27 C -0.044 4.044 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.114 0.886 47 H 0.208 0.792 48 H 0.082 0.918 49 H 0.123 0.877 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.668 21.448 11.533 27.450 hybrid contribution -0.182 -1.871 0.212 1.891 sum 12.486 19.578 11.745 26.022 Atomic orbital electron populations 1.20211 0.85719 1.03122 1.03845 1.22510 0.97794 0.90316 0.98455 1.77160 0.87414 1.23174 1.27681 1.48563 1.05219 1.04153 1.57064 1.22095 0.83379 0.94618 0.99093 1.21455 0.99325 0.97715 0.93927 1.22086 1.01244 0.96470 1.01362 1.21750 0.96890 0.97967 1.03147 1.21110 0.97262 0.85030 0.99209 1.20845 0.93081 0.98540 1.03681 1.19240 0.92133 0.94795 1.19208 1.19806 1.04762 0.92114 0.91714 1.21019 0.75684 0.78622 0.92601 1.90628 1.53374 1.54731 1.48216 1.50134 1.65258 1.10822 1.10860 1.23205 1.00826 0.86295 0.89759 1.20583 0.79736 0.91741 0.93510 1.86474 1.28331 1.51245 1.71136 1.21357 1.14812 0.98551 1.23395 0.92892 1.25882 0.98186 0.94924 0.98632 1.70011 1.38518 1.05426 1.42411 0.86312 0.79271 0.80634 0.79299 1.18558 1.14572 1.20999 1.24417 1.01874 0.81455 0.96660 0.88479 0.90956 0.91100 0.87395 0.88918 0.92310 0.91436 0.93691 0.90612 0.92114 0.91293 0.91041 0.90945 0.87854 0.88911 0.86639 0.86992 0.91814 0.88557 0.79179 0.91792 0.87712 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.12 71.23 0.72 -0.96 16 2 C 0.07 2.24 7.22 43.10 0.31 2.55 16 3 N -0.33 -10.22 12.58 -47.39 -0.60 -10.82 16 4 N -0.37 -9.50 3.44 -334.70 -1.15 -10.66 16 5 C 0.13 2.23 5.58 86.38 0.48 2.72 16 6 C -0.10 -1.44 3.13 -10.80 -0.03 -1.48 16 7 C -0.15 -1.95 7.57 71.98 0.54 -1.40 16 8 C -0.14 -1.24 9.19 71.98 0.66 -0.58 16 9 C 0.10 2.67 5.69 41.41 0.24 2.91 16 10 C -0.10 -2.02 9.07 71.24 0.65 -1.37 16 11 C -0.24 -7.09 4.59 -20.14 -0.09 -7.18 16 12 C -0.04 -1.19 5.39 29.10 0.16 -1.04 16 13 C 0.53 19.33 8.05 87.65 0.71 20.04 16 14 O -0.59 -26.13 16.76 -3.02 -0.05 -26.18 16 15 N -0.64 -23.81 3.61 -840.32 -3.03 -26.84 16 16 C 0.12 5.03 8.23 86.48 0.71 5.74 16 17 C 0.19 8.01 1.06 -10.89 -0.01 8.00 16 18 O -0.56 -24.54 13.32 -148.98 -1.98 -26.53 16 19 C -0.54 -27.86 9.20 25.60 0.24 -27.62 16 20 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 21 C 0.02 1.26 5.47 84.66 0.46 1.73 16 22 N -0.93 -52.16 13.96 21.45 0.30 -51.87 16 23 Si 0.92 36.44 24.34 68.60 1.67 38.11 16 24 H -0.26 -9.96 7.06 99.48 0.70 -9.26 16 25 H -0.22 -7.50 5.28 99.48 0.53 -6.98 16 26 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 27 C 0.08 2.79 7.20 86.47 0.62 3.42 16 28 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.74 7.92 -2.39 -0.02 1.72 16 31 H 0.11 1.46 7.68 -2.39 -0.02 1.45 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.04 0.74 5.86 -2.38 -0.01 0.73 16 36 H 0.08 0.71 6.87 -2.39 -0.02 0.70 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 1.41 4.39 -2.39 -0.01 1.40 16 42 H 0.09 1.64 7.14 -2.39 -0.02 1.63 16 43 H 0.12 2.67 7.92 -2.38 -0.02 2.65 16 44 H 0.11 2.59 7.14 -2.39 -0.02 2.57 16 45 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 46 H 0.10 3.83 8.09 -2.38 -0.02 3.81 16 47 H 0.36 14.40 3.31 -74.06 -0.24 14.16 16 48 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 49 H 0.10 3.53 8.09 -2.39 -0.02 3.51 16 50 H 0.09 2.85 6.98 -2.39 -0.02 2.84 16 Total: -1.00 -71.85 393.38 2.03 -69.82 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: 0.52 Total: 39.48 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.36 Total: 5.48 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -4.48 Total: -100.18 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -2.03 Total: -52.70 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 1.67 Total: 38.11 kcal Total: -71.85 2.03 -69.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.116 kcal (2) G-P(sol) polarization free energy of solvation -71.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds