Wall clock time and date at job start Tue Mar 31 2020 19:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08992 * 109.47422 * 2 1 4 4 C 1.50704 * 109.47241 * 239.99503 * 2 1 3 5 5 H 1.07995 * 120.00388 * 240.00428 * 4 2 1 6 6 C 1.37880 * 119.99529 * 60.00177 * 4 2 1 7 7 N 1.31510 * 120.00357 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99625 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46919 * 90.00458 * 8 6 4 10 10 H 1.48504 * 109.46990 * 210.00193 * 8 6 4 11 11 H 1.48499 * 109.47322 * 330.00154 * 8 6 4 12 12 N 1.46508 * 109.47044 * 120.00119 * 2 1 3 13 13 C 1.34777 * 119.99739 * 274.99830 * 12 2 1 14 14 O 1.21280 * 119.99951 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99919 * 179.97438 * 13 12 2 16 16 H 1.09007 * 110.53996 * 302.61190 * 15 13 12 17 17 C 1.54460 * 110.65876 * 65.23941 * 15 13 12 18 18 C 1.53880 * 106.68555 * 142.05355 * 17 15 13 19 19 C 1.52998 * 110.03174 * 119.43768 * 18 17 15 20 20 C 1.54268 * 106.59771 * 0.15749 * 18 17 15 21 21 C 1.54893 * 110.48489 * 180.02562 * 15 13 12 22 22 H 1.08990 * 110.75512 * 321.87447 * 21 15 13 23 23 C 1.50705 * 110.75547 * 85.06683 * 21 15 13 24 24 O 1.21280 * 119.99748 * 357.46290 * 23 21 15 25 25 N 1.34769 * 119.99510 * 177.46638 * 23 21 15 26 26 C 1.46505 * 119.99798 * 179.97438 * 25 23 21 27 27 H 1.09002 * 109.47068 * 34.99973 * 26 25 23 28 28 C 1.52997 * 109.47212 * 274.99913 * 26 25 23 29 29 C 1.53002 * 109.47411 * 155.00053 * 26 25 23 30 30 C 1.47200 * 109.46659 * 294.99967 * 29 26 25 31 31 N 9.92856 * 89.23443 * 92.33583 * 2 1 3 32 32 H 1.08997 * 109.47294 * 300.00063 * 1 2 3 33 33 H 1.09005 * 109.47092 * 60.00015 * 1 2 3 34 34 H 1.09002 * 109.47501 * 179.97438 * 1 2 3 35 35 H 0.96993 * 120.00301 * 179.97438 * 7 6 4 36 36 H 0.96996 * 119.99982 * 94.99386 * 12 2 1 37 37 H 1.08999 * 109.86403 * 22.81157 * 17 15 13 38 38 H 1.09007 * 110.16202 * 261.45439 * 17 15 13 39 39 H 1.08996 * 110.03533 * 240.87559 * 18 17 15 40 40 H 1.08993 * 109.47713 * 302.83419 * 19 18 17 41 41 H 1.09004 * 109.47336 * 62.84145 * 19 18 17 42 42 H 1.09001 * 109.47110 * 182.83204 * 19 18 17 43 43 H 1.08995 * 110.49118 * 217.71371 * 20 18 17 44 44 H 1.09000 * 110.60216 * 95.11955 * 20 18 17 45 45 H 0.97005 * 120.00963 * 359.97438 * 25 23 21 46 46 H 1.09002 * 109.47153 * 300.00008 * 28 26 25 47 47 H 1.08998 * 109.47533 * 59.99637 * 28 26 25 48 48 H 1.08996 * 109.47853 * 179.97438 * 28 26 25 49 49 H 1.09000 * 109.47059 * 54.99891 * 29 26 25 50 50 H 1.08996 * 109.47073 * 174.99983 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8590 1.1586 2.4115 15 6 2.6488 -0.7288 3.5878 16 1 2.0135 -1.5831 3.8219 17 6 4.1126 -1.1828 3.3961 18 6 4.8188 -0.9798 4.7482 19 6 5.3450 -2.3181 5.2707 20 6 3.7606 -0.4134 5.7173 21 6 2.7097 0.2463 4.7897 22 1 3.0428 1.2335 4.4697 23 6 1.3706 0.3329 5.4756 24 8 0.4223 -0.2806 5.0339 25 7 1.2270 1.0922 6.5797 26 6 -0.0749 1.1769 7.2462 27 1 -0.5839 0.2159 7.1728 28 6 -0.9238 2.2565 6.5719 29 6 0.1288 1.5349 8.7198 30 6 0.8422 0.4396 9.3966 31 7 1.3973 -0.4046 9.9194 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 0.7096 1.1617 -3.4844 36 1 2.2489 -1.6318 1.1527 37 1 4.5919 -0.5739 2.6295 38 1 4.1457 -2.2346 3.1119 39 1 5.6406 -0.2724 4.6378 40 1 4.5200 -3.0255 5.3537 41 1 6.0915 -2.7098 4.5797 42 1 5.7986 -2.1723 6.2511 43 1 4.2070 0.3301 6.3776 44 1 3.3055 -1.2148 6.2993 45 1 1.9856 1.5827 6.9333 46 1 -0.4148 3.2175 6.6453 47 1 -1.0689 2.0016 5.5221 48 1 -1.8926 2.3193 7.0674 49 1 0.7152 2.4508 8.7935 50 1 -0.8408 1.6851 9.1946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249464022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:30 Heat of formation + Delta-G solvation = -78.636397 kcal Electronic energy + Delta-G solvation = -29796.630226 eV Core-core repulsion = 25822.599657 eV Total energy + Delta-G solvation = -3974.030570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.55283 -38.98832 -37.55115 -37.04597 -35.60643 -34.67281 -32.37302 -32.19585 -31.23882 -29.57321 -28.50227 -28.07760 -25.63437 -25.18714 -23.49293 -21.91406 -20.88817 -20.03566 -19.93513 -19.03937 -18.19996 -17.50317 -16.95428 -16.55938 -15.81909 -15.29024 -15.00215 -14.83630 -14.80252 -14.54003 -14.05997 -13.98907 -13.75689 -13.61238 -13.20234 -13.19303 -12.96790 -12.68755 -12.60849 -12.44049 -12.32930 -12.08385 -11.97857 -11.84759 -11.50586 -11.47660 -11.27907 -11.08223 -10.98886 -10.93962 -10.89208 -10.79729 -10.58264 -10.49029 -10.25222 -10.17522 -9.64529 -9.25011 -8.97392 -8.84299 -8.49608 -7.79578 -6.07572 -4.16446 2.38665 2.42233 2.73728 3.01364 3.26902 3.33443 3.35658 3.52891 3.55837 4.14927 4.30480 4.32788 4.41089 4.51995 4.65426 4.72398 4.89596 5.01105 5.11499 5.16729 5.19592 5.24453 5.29404 5.38744 5.45231 5.47750 5.49009 5.57028 5.64946 5.73957 5.78723 5.87564 5.93758 6.03476 6.07375 6.15456 6.27067 6.33179 6.38158 6.92147 7.08644 7.20414 7.24701 7.38968 7.56136 7.65160 7.76778 7.99250 8.21906 8.25978 8.77347 8.85047 9.24384 9.51444 10.98401 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.002926 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.414894 B = 9567.227861 C =11064.790733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.516 3.484 14 O -0.558 6.558 15 C -0.096 4.096 16 H 0.104 0.896 17 C -0.112 4.112 18 C -0.092 4.092 19 C -0.145 4.145 20 C -0.109 4.109 21 C -0.095 4.095 22 H 0.116 0.884 23 C 0.533 3.467 24 O -0.527 6.527 25 N -0.735 5.735 26 C 0.147 3.853 27 H 0.096 0.904 28 C -0.164 4.164 29 C -0.034 4.034 30 C 0.202 3.798 31 N -0.430 5.430 32 H 0.015 0.985 33 H 0.088 0.912 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.387 0.613 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.399 0.601 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.115 0.885 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 1.278 22.208 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.355 5.355 13 C 0.301 3.699 14 O -0.437 6.437 15 C -0.118 4.118 16 H 0.122 0.878 17 C -0.150 4.150 18 C -0.111 4.111 19 C -0.202 4.202 20 C -0.147 4.147 21 C -0.117 4.117 22 H 0.134 0.866 23 C 0.320 3.680 24 O -0.401 6.401 25 N -0.388 5.388 26 C 0.041 3.959 27 H 0.114 0.886 28 C -0.223 4.223 29 C -0.075 4.075 30 C -0.116 4.116 31 N -0.107 5.107 32 H 0.034 0.966 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.219 0.781 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.233 0.767 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.133 0.867 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.898 0.520 22.517 22.708 hybrid contribution 0.440 -0.286 -0.963 1.097 sum 3.339 0.234 21.553 21.812 Atomic orbital electron populations 1.22061 0.98566 0.99085 1.00770 1.18697 0.90978 0.93844 0.80072 0.93532 1.21238 1.32271 1.13102 0.90397 0.92137 1.24888 0.94881 0.94958 0.99014 1.69906 1.36025 1.22463 1.23761 0.86469 0.79157 0.79282 0.82297 1.20576 1.21110 1.19884 1.46463 1.65025 1.13435 1.10547 1.20102 0.78135 0.87295 0.84415 1.90612 1.51708 1.16285 1.85116 1.22040 0.97798 0.98872 0.93084 0.87816 1.22263 0.93175 1.02166 0.97408 1.21695 0.97511 0.97488 0.94412 1.21888 1.01053 0.96561 1.00700 1.22444 0.95225 0.99965 0.97039 1.22130 0.92369 1.02142 0.95036 0.86575 1.20452 0.90523 0.77658 0.79371 1.90716 1.41329 1.44580 1.63511 1.46076 1.12137 1.50937 1.29660 1.20861 0.85371 1.01495 0.88211 0.88639 1.22184 0.99350 0.98115 1.02641 1.19710 1.01277 0.92652 0.93850 1.29166 0.93995 0.94721 0.93726 1.81320 1.09432 1.10409 1.09495 0.96625 0.89315 0.95568 0.92652 0.78058 0.90736 0.90604 0.90495 0.92483 0.92433 0.92854 0.91037 0.91120 0.76698 0.91839 0.90851 0.91248 0.86707 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.26 37.15 0.34 -3.49 16 2 C 0.27 6.98 2.56 -69.08 -0.18 6.80 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.71 -15.39 5.06 -54.93 -0.28 -15.66 16 13 C 0.52 10.62 6.96 -10.99 -0.08 10.54 16 14 O -0.56 -13.43 15.38 5.56 0.09 -13.35 16 15 C -0.10 -1.47 2.32 -90.01 -0.21 -1.68 16 16 H 0.10 1.63 7.48 -51.93 -0.39 1.24 16 17 C -0.11 -1.39 6.03 -25.51 -0.15 -1.54 16 18 C -0.09 -0.91 3.50 -89.50 -0.31 -1.23 16 19 C -0.14 -1.26 8.84 37.16 0.33 -0.93 16 20 C -0.11 -1.07 5.78 -25.06 -0.14 -1.21 16 21 C -0.10 -1.24 2.32 -89.76 -0.21 -1.45 16 22 H 0.12 1.60 7.45 -51.93 -0.39 1.22 16 23 C 0.53 7.36 7.10 -10.99 -0.08 7.28 16 24 O -0.53 -9.48 15.41 5.56 0.09 -9.40 16 25 N -0.73 -6.80 4.76 -53.80 -0.26 -7.05 16 26 C 0.15 1.09 2.55 -67.93 -0.17 0.92 16 27 H 0.10 0.92 7.58 -51.93 -0.39 0.52 16 28 C -0.16 -1.24 9.48 37.16 0.35 -0.88 16 29 C -0.03 -0.13 5.25 -29.52 -0.16 -0.28 16 30 C 0.20 1.57 15.15 -20.71 -0.31 1.26 16 31 N -0.43 -4.86 18.55 42.22 0.78 -4.08 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 36 H 0.39 7.42 8.54 -40.82 -0.35 7.08 16 37 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 38 H 0.08 0.85 7.67 -51.93 -0.40 0.45 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.73 7.76 -51.93 -0.40 0.32 16 45 H 0.40 2.59 8.60 -40.82 -0.35 2.24 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 50 H 0.13 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 412.77 15.07 6.22 6.22 Total: -1.00 -36.20 412.77 -7.52 -43.72 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.40 Total: 7.25 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.37 Total: 1.14 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.88 Total: -51.48 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.74 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.20 -7.52 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249464022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.912 kcal (2) G-P(sol) polarization free energy of solvation -36.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds