Wall clock time and date at job start Tue Mar 31 2020 19:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08992 * 109.47422 * 2 1 4 4 C 1.50704 * 109.47241 * 239.99503 * 2 1 3 5 5 H 1.07995 * 120.00388 * 240.00428 * 4 2 1 6 6 C 1.37880 * 119.99529 * 60.00177 * 4 2 1 7 7 N 1.31510 * 120.00357 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99625 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46919 * 90.00458 * 8 6 4 10 10 H 1.48504 * 109.46990 * 210.00193 * 8 6 4 11 11 H 1.48499 * 109.47322 * 330.00154 * 8 6 4 12 12 N 1.46508 * 109.47044 * 120.00119 * 2 1 3 13 13 C 1.34777 * 119.99739 * 274.99830 * 12 2 1 14 14 O 1.21280 * 119.99951 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99919 * 179.97438 * 13 12 2 16 16 H 1.09007 * 110.53996 * 302.61190 * 15 13 12 17 17 C 1.54460 * 110.65876 * 65.23941 * 15 13 12 18 18 C 1.53880 * 106.68555 * 142.05355 * 17 15 13 19 19 C 1.52998 * 110.03174 * 119.43768 * 18 17 15 20 20 C 1.54268 * 106.59771 * 0.15749 * 18 17 15 21 21 C 1.54893 * 110.48489 * 180.02562 * 15 13 12 22 22 H 1.08990 * 110.75512 * 321.87447 * 21 15 13 23 23 C 1.50705 * 110.75547 * 85.06683 * 21 15 13 24 24 O 1.21280 * 119.99748 * 357.46290 * 23 21 15 25 25 N 1.34769 * 119.99510 * 177.46638 * 23 21 15 26 26 C 1.46505 * 119.99798 * 179.97438 * 25 23 21 27 27 H 1.09002 * 109.47068 * 34.99973 * 26 25 23 28 28 C 1.52997 * 109.47212 * 274.99913 * 26 25 23 29 29 C 1.53002 * 109.47411 * 155.00053 * 26 25 23 30 30 C 1.47200 * 109.46659 * 294.99967 * 29 26 25 31 31 N 9.92856 * 89.23443 * 92.33583 * 2 1 3 32 32 H 1.08997 * 109.47294 * 300.00063 * 1 2 3 33 33 H 1.09005 * 109.47092 * 60.00015 * 1 2 3 34 34 H 1.09002 * 109.47501 * 179.97438 * 1 2 3 35 35 H 0.96993 * 120.00301 * 179.97438 * 7 6 4 36 36 H 0.96996 * 119.99982 * 94.99386 * 12 2 1 37 37 H 1.08999 * 109.86403 * 22.81157 * 17 15 13 38 38 H 1.09007 * 110.16202 * 261.45439 * 17 15 13 39 39 H 1.08996 * 110.03533 * 240.87559 * 18 17 15 40 40 H 1.08993 * 109.47713 * 302.83419 * 19 18 17 41 41 H 1.09004 * 109.47336 * 62.84145 * 19 18 17 42 42 H 1.09001 * 109.47110 * 182.83204 * 19 18 17 43 43 H 1.08995 * 110.49118 * 217.71371 * 20 18 17 44 44 H 1.09000 * 110.60216 * 95.11955 * 20 18 17 45 45 H 0.97005 * 120.00963 * 359.97438 * 25 23 21 46 46 H 1.09002 * 109.47153 * 300.00008 * 28 26 25 47 47 H 1.08998 * 109.47533 * 59.99637 * 28 26 25 48 48 H 1.08996 * 109.47853 * 179.97438 * 28 26 25 49 49 H 1.09000 * 109.47059 * 54.99891 * 29 26 25 50 50 H 1.08996 * 109.47073 * 174.99983 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8590 1.1586 2.4115 15 6 2.6488 -0.7288 3.5878 16 1 2.0135 -1.5831 3.8219 17 6 4.1126 -1.1828 3.3961 18 6 4.8188 -0.9798 4.7482 19 6 5.3450 -2.3181 5.2707 20 6 3.7606 -0.4134 5.7173 21 6 2.7097 0.2463 4.7897 22 1 3.0428 1.2335 4.4697 23 6 1.3706 0.3329 5.4756 24 8 0.4223 -0.2806 5.0339 25 7 1.2270 1.0922 6.5797 26 6 -0.0749 1.1769 7.2462 27 1 -0.5839 0.2159 7.1728 28 6 -0.9238 2.2565 6.5719 29 6 0.1288 1.5349 8.7198 30 6 0.8422 0.4396 9.3966 31 7 1.3973 -0.4046 9.9194 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 0.7096 1.1617 -3.4844 36 1 2.2489 -1.6318 1.1527 37 1 4.5919 -0.5739 2.6295 38 1 4.1457 -2.2346 3.1119 39 1 5.6406 -0.2724 4.6378 40 1 4.5200 -3.0255 5.3537 41 1 6.0915 -2.7098 4.5797 42 1 5.7986 -2.1723 6.2511 43 1 4.2070 0.3301 6.3776 44 1 3.3055 -1.2148 6.2993 45 1 1.9856 1.5827 6.9333 46 1 -0.4148 3.2175 6.6453 47 1 -1.0689 2.0016 5.5221 48 1 -1.8926 2.3193 7.0674 49 1 0.7152 2.4508 8.7935 50 1 -0.8408 1.6851 9.1946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249464022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:29 Heat of formation + Delta-G solvation = -104.284798 kcal Electronic energy + Delta-G solvation = -29797.742425 eV Core-core repulsion = 25822.599657 eV Total energy + Delta-G solvation = -3975.142768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.70774 -40.31538 -38.65072 -37.93696 -36.66466 -36.41567 -34.32460 -33.09289 -32.33091 -31.02102 -29.58077 -29.00864 -27.36217 -26.51077 -24.63430 -23.21347 -22.07187 -21.40105 -20.97169 -20.49608 -19.02040 -18.89068 -18.07254 -17.48370 -17.36426 -17.10738 -16.44103 -16.08054 -15.75695 -15.58206 -15.18098 -15.09114 -14.69806 -14.59435 -14.44717 -14.39863 -14.26261 -13.96326 -13.72569 -13.44356 -13.32751 -13.20851 -13.06060 -12.92340 -12.77871 -12.67850 -12.62386 -12.53359 -12.49046 -12.29947 -12.15746 -11.97584 -11.88108 -11.79582 -11.67791 -11.42384 -11.11562 -10.72471 -10.66123 -10.50831 -10.12380 -9.72644 -8.17930 -6.35699 1.43970 1.44977 1.55687 1.67135 1.78357 1.85849 1.86817 2.19561 2.36015 2.66701 3.06812 3.11982 3.26830 3.53983 3.75055 3.83225 4.06879 4.21597 4.23627 4.26030 4.33881 4.36253 4.46763 4.53412 4.56539 4.70999 4.71819 4.76265 4.82568 4.87227 4.88685 4.91401 4.98316 5.07098 5.08249 5.10785 5.17275 5.28381 5.33740 5.40908 5.41676 5.53169 5.56324 5.61454 5.67390 5.89604 6.08554 6.53166 6.66328 6.72124 6.98379 7.29550 7.31846 7.57395 8.88739 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.002926 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.414894 B = 9567.227861 C =11064.790733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H -0.001 1.001 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.263 1.263 12 N -0.707 5.707 13 C 0.510 3.490 14 O -0.597 6.597 15 C -0.090 4.090 16 H 0.100 0.900 17 C -0.108 4.108 18 C -0.087 4.087 19 C -0.142 4.142 20 C -0.096 4.096 21 C -0.096 4.096 22 H 0.108 0.892 23 C 0.526 3.474 24 O -0.579 6.579 25 N -0.718 5.718 26 C 0.143 3.857 27 H 0.070 0.930 28 C -0.159 4.159 29 C -0.022 4.022 30 C 0.228 3.772 31 N -0.496 5.496 32 H 0.004 0.996 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.266 0.734 36 H 0.401 0.599 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.415 0.585 46 H 0.082 0.918 47 H 0.022 0.978 48 H 0.097 0.903 49 H 0.154 0.846 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.515 1.013 23.991 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.170 3.830 3 H 0.017 0.983 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.187 1.187 12 N -0.355 5.355 13 C 0.298 3.702 14 O -0.479 6.479 15 C -0.112 4.112 16 H 0.118 0.882 17 C -0.146 4.146 18 C -0.105 4.105 19 C -0.199 4.199 20 C -0.134 4.134 21 C -0.117 4.117 22 H 0.126 0.874 23 C 0.313 3.687 24 O -0.459 6.459 25 N -0.372 5.372 26 C 0.038 3.962 27 H 0.088 0.912 28 C -0.217 4.217 29 C -0.061 4.061 30 C -0.089 4.089 31 N -0.174 5.174 32 H 0.023 0.977 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.252 0.748 46 H 0.101 0.899 47 H 0.041 0.959 48 H 0.116 0.884 49 H 0.172 0.828 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.380 0.256 24.365 24.756 hybrid contribution -0.088 -0.102 -1.505 1.511 sum 4.291 0.154 22.859 23.259 Atomic orbital electron populations 1.21893 0.98900 0.99068 0.99214 1.18289 0.90650 0.91941 0.82085 0.98285 1.21536 1.32606 1.13521 0.90777 0.90913 1.25833 0.94858 0.95578 1.02375 1.70054 1.37043 1.23936 1.24626 0.85317 0.78995 0.78015 0.77835 1.19770 1.21014 1.18671 1.46275 1.65275 1.14026 1.09949 1.21056 0.76831 0.86996 0.85329 1.90578 1.53161 1.18323 1.85864 1.22004 0.99370 0.98735 0.91049 0.88184 1.22290 0.90953 1.02483 0.98888 1.21693 0.97513 0.98729 0.92592 1.21864 1.01052 0.95468 1.01529 1.22431 0.93969 1.00365 0.96606 1.22155 0.93281 1.01404 0.94898 0.87368 1.20658 0.90116 0.77722 0.80215 1.90690 1.42797 1.47078 1.65290 1.46005 1.13664 1.49331 1.28162 1.20968 0.84169 1.00507 0.90592 0.91171 1.22132 1.01216 0.98699 0.99687 1.19954 1.03575 0.92344 0.90271 1.29839 0.92553 0.94147 0.92378 1.81349 1.11925 1.12432 1.11700 0.97659 0.91265 0.94614 0.92512 0.76440 0.92220 0.89324 0.89181 0.92956 0.91853 0.91468 0.87986 0.91305 0.74771 0.89932 0.95914 0.88449 0.82818 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.24 9.26 71.98 0.67 -6.58 16 2 C 0.27 15.00 2.56 44.24 0.11 15.11 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.55 -29.94 8.73 25.60 0.22 -29.71 16 5 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.96 11.32 21.45 0.24 -53.71 16 8 Si 0.97 42.82 29.54 68.60 2.03 44.84 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 N -0.71 -31.90 5.06 -446.10 -2.26 -34.15 16 13 C 0.51 21.97 6.96 87.66 0.61 22.58 16 14 O -0.60 -30.44 15.38 -3.03 -0.05 -30.48 16 15 C -0.09 -2.80 2.32 -10.40 -0.02 -2.82 16 16 H 0.10 3.23 7.48 -2.38 -0.02 3.21 16 17 C -0.11 -2.59 6.03 31.39 0.19 -2.40 16 18 C -0.09 -1.52 3.50 -10.07 -0.04 -1.55 16 19 C -0.14 -2.08 8.84 71.98 0.64 -1.45 16 20 C -0.10 -1.68 5.78 31.68 0.18 -1.49 16 21 C -0.10 -2.49 2.32 -10.24 -0.02 -2.51 16 22 H 0.11 3.01 7.45 -2.39 -0.02 2.99 16 23 C 0.53 14.76 7.10 87.66 0.62 15.38 16 24 O -0.58 -21.98 15.41 -3.03 -0.05 -22.02 16 25 N -0.72 -12.54 4.76 -442.53 -2.10 -14.65 16 26 C 0.14 1.92 2.55 44.99 0.11 2.04 16 27 H 0.07 1.35 7.58 -2.39 -0.02 1.33 16 28 C -0.16 -2.21 9.48 71.98 0.68 -1.52 16 29 C -0.02 -0.08 5.25 28.79 0.15 0.07 16 30 C 0.23 3.02 15.15 89.42 1.35 4.37 16 31 N -0.50 -10.68 18.55 20.03 0.37 -10.31 16 32 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.07 4.06 6.07 -2.38 -0.01 4.05 16 34 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.40 15.66 8.54 -92.71 -0.79 14.87 16 37 H 0.06 1.62 7.83 -2.39 -0.02 1.60 16 38 H 0.09 1.88 7.67 -2.38 -0.02 1.86 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.28 7.76 -2.39 -0.02 1.26 16 45 H 0.42 4.39 8.60 -92.70 -0.80 3.59 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 50 H 0.16 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: -1.00 -85.60 412.77 3.46 -82.14 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.64 Total: 27.64 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.91 Total: 10.71 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -3.75 Total: -112.82 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.09 Total: -52.50 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -85.60 3.46 -82.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249464022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.143 kcal (2) G-P(sol) polarization free energy of solvation -85.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds