Wall clock time and date at job start Tue Mar 31 2020 19:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39807 * 120.08481 * 2 1 4 4 C 1.36028 * 119.07978 * 180.24679 * 3 2 1 5 5 C 1.50700 * 120.40358 * 179.73986 * 4 3 2 6 6 N 1.35871 * 119.18964 * 359.46422 * 4 3 2 7 7 C 1.46499 * 119.93514 * 180.29693 * 6 4 3 8 8 C 1.50697 * 109.47101 * 93.85915 * 7 6 4 9 9 O 1.21285 * 119.99921 * 353.32286 * 8 7 6 10 10 N 1.34783 * 120.00086 * 173.31647 * 8 7 6 11 11 C 1.46499 * 119.99937 * 175.45509 * 10 8 7 12 12 C 1.50694 * 109.47342 * 90.00335 * 11 10 8 13 13 H 1.07999 * 119.99851 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99521 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00152 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47232 * 89.99734 * 16 14 12 18 18 H 1.48500 * 109.47028 * 209.99552 * 16 14 12 19 19 H 1.48502 * 109.47129 * 329.99567 * 16 14 12 20 20 C 1.46501 * 119.99797 * 355.45521 * 10 8 7 21 21 C 1.52992 * 109.46960 * 94.73076 * 20 10 8 22 22 C 1.53001 * 109.47131 * 59.07773 * 21 20 10 23 23 C 1.53006 * 109.46983 * 179.07724 * 21 20 10 24 24 C 1.53004 * 109.47375 * 299.07286 * 21 20 10 25 25 C 1.34615 * 120.12692 * 0.27764 * 6 4 3 26 26 O 1.21957 * 119.52517 * 179.97438 * 25 6 4 27 27 N 1.31759 * 120.08518 * 179.70927 * 2 1 3 28 28 H 1.08998 * 109.47464 * 180.28763 * 1 2 3 29 29 H 1.08997 * 109.47372 * 300.29575 * 1 2 3 30 30 H 1.09002 * 109.46788 * 60.29115 * 1 2 3 31 31 H 1.07999 * 120.46366 * 0.02562 * 3 2 1 32 32 H 1.08994 * 109.46928 * 264.32747 * 5 4 3 33 33 H 1.09000 * 109.47415 * 24.32982 * 5 4 3 34 34 H 1.09006 * 109.46648 * 144.33064 * 5 4 3 35 35 H 1.09004 * 109.46891 * 213.86049 * 7 6 4 36 36 H 1.08996 * 109.46915 * 333.86166 * 7 6 4 37 37 H 1.09001 * 109.46480 * 210.00181 * 11 10 8 38 38 H 1.08998 * 109.47147 * 329.99637 * 11 10 8 39 39 H 0.97003 * 119.99400 * 180.02562 * 15 14 12 40 40 H 1.08995 * 109.46742 * 214.73286 * 20 10 8 41 41 H 1.09001 * 109.47294 * 334.73050 * 20 10 8 42 42 H 1.08999 * 109.47012 * 59.99859 * 22 21 20 43 43 H 1.09003 * 109.46852 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47273 * 299.99472 * 22 21 20 45 45 H 1.08996 * 109.47407 * 59.99944 * 23 21 20 46 46 H 1.08997 * 109.47190 * 180.02562 * 23 21 20 47 47 H 1.08999 * 109.46669 * 299.99988 * 23 21 20 48 48 H 1.08996 * 109.46696 * 58.28638 * 24 21 20 49 49 H 1.09003 * 109.47050 * 178.28244 * 24 21 20 50 50 H 1.08993 * 109.47153 * 298.28490 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.2097 0.0000 4 6 3.5679 1.1859 -0.0051 5 6 4.3532 2.4721 -0.0112 6 7 4.2097 -0.0117 0.0010 7 6 5.6740 -0.0564 0.0022 8 6 6.1722 -0.1606 1.4206 9 8 5.3923 -0.0724 2.3453 10 7 7.4844 -0.3519 1.6617 11 6 7.9835 -0.3537 3.0390 12 6 7.9362 -1.7560 3.5887 13 1 7.5705 -2.5650 2.9737 14 6 8.3587 -2.0061 4.8771 15 7 8.8036 -1.0208 5.6261 16 14 8.2994 -3.7442 5.5587 17 1 9.5823 -4.4337 5.2689 18 1 8.0857 -3.6930 7.0273 19 1 7.1829 -4.4879 4.9217 20 6 8.4116 -0.5580 0.5463 21 6 9.0457 0.7786 0.1566 22 6 9.7883 1.3612 1.3608 23 6 10.0312 0.5596 -0.9932 24 6 7.9519 1.7518 -0.2878 25 6 3.5026 -1.1572 0.0063 26 8 4.0899 -2.2260 0.0113 27 7 2.1675 -1.1401 0.0058 28 1 -0.3634 -1.0276 0.0052 29 1 -0.3634 0.5184 0.8873 30 1 -0.3633 0.5093 -0.8926 31 1 1.6768 2.1502 0.0004 32 1 4.6253 2.7267 -1.0354 33 1 3.7450 3.2712 0.4126 34 1 5.2574 2.3484 0.5850 35 1 6.0115 -0.9232 -0.5661 36 1 6.0656 0.8525 -0.4546 37 1 9.0118 0.0077 3.0532 38 1 7.3609 0.2981 3.6519 39 1 9.1012 -1.1969 6.5324 40 1 9.1923 -1.2566 0.8472 41 1 7.8689 -0.9652 -0.3069 42 1 10.5675 0.6679 1.6773 43 1 10.2404 2.3133 1.0830 44 1 9.0862 1.5173 2.1798 45 1 9.5023 0.1446 -1.8511 46 1 10.4834 1.5118 -1.2705 47 1 10.8105 -0.1337 -0.6766 48 1 7.2331 1.8842 0.5208 49 1 8.4004 2.7137 -0.5364 50 1 7.4431 1.3509 -1.1643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274164955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:02 Heat of formation + Delta-G solvation = -20.896514 kcal Electronic energy + Delta-G solvation = -31219.832484 eV Core-core repulsion = 27248.305704 eV Total energy + Delta-G solvation = -3971.526780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.84648 -39.60926 -37.28610 -37.15009 -36.02114 -33.94560 -32.49258 -32.21739 -30.74353 -29.38520 -27.98498 -27.34772 -26.92296 -26.43966 -25.44856 -23.14614 -22.76560 -21.75667 -19.55826 -18.55475 -18.39468 -17.35363 -16.80336 -16.54201 -15.99108 -15.58323 -15.35726 -15.25638 -14.44476 -14.20664 -13.98945 -13.91498 -13.79843 -13.74530 -13.61988 -13.45343 -13.24885 -12.83563 -12.65217 -12.54654 -12.26587 -12.21795 -12.14062 -11.77957 -11.55408 -11.43749 -11.31306 -11.21537 -10.98466 -10.86037 -10.74620 -10.67064 -10.60450 -10.57673 -10.25355 -10.12641 -9.57730 -9.48820 -9.13423 -8.41074 -8.29933 -7.74264 -6.04198 -4.07344 0.65487 1.72157 2.41963 3.14481 3.32957 3.39606 3.48044 3.69125 3.95102 4.06564 4.15123 4.47635 4.54530 4.70426 4.75506 4.83826 4.88082 5.02260 5.05642 5.07676 5.11231 5.16787 5.31128 5.33865 5.36095 5.43825 5.48757 5.52375 5.55731 5.58946 5.75564 5.77842 5.79652 5.89804 5.96606 6.06142 6.09140 6.15472 6.27883 6.28276 6.42857 6.55628 6.64310 6.98639 7.33954 7.46908 7.92598 7.96445 8.22876 8.25481 8.34172 8.80910 8.99506 9.57628 11.03773 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009858 B = 0.004593 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.734590 B = 6094.698926 C = 7927.338221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.268 3.732 3 C -0.302 4.302 4 C 0.227 3.773 5 C -0.136 4.136 6 N -0.493 5.493 7 C 0.048 3.952 8 C 0.497 3.503 9 O -0.527 6.527 10 N -0.584 5.584 11 C 0.242 3.758 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.114 3.886 21 C -0.086 4.086 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.153 4.153 25 C 0.636 3.364 26 O -0.526 6.526 27 N -0.552 5.552 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 13.030 -17.310 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 C -0.328 4.328 4 C 0.108 3.892 5 C -0.192 4.192 6 N -0.207 5.207 7 C -0.078 4.078 8 C 0.281 3.719 9 O -0.404 6.404 10 N -0.315 5.315 11 C 0.124 3.876 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.536 5.536 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.011 4.011 21 C -0.088 4.088 22 C -0.202 4.202 23 C -0.196 4.196 24 C -0.210 4.210 25 C 0.338 3.662 26 O -0.400 6.400 27 N -0.287 5.287 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.172 0.828 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.531 11.383 -16.587 21.151 hybrid contribution 0.524 -0.280 0.545 0.807 sum -6.007 11.102 -16.042 20.413 Atomic orbital electron populations 1.20916 0.87832 1.04920 1.03517 1.22138 0.97641 0.88310 0.81339 1.21117 0.91813 1.00541 1.19315 1.21115 0.93411 0.87774 0.86921 1.21272 1.01301 0.92416 1.04258 1.46145 1.08835 1.07159 1.58568 1.22670 0.78424 1.07325 0.99405 1.20137 0.83495 0.78711 0.89530 1.90729 1.54324 1.50190 1.45123 1.48137 1.05381 1.68532 1.09445 1.19525 0.95340 0.97833 0.74928 1.21461 1.42450 0.93892 0.98601 0.92445 1.24886 0.95110 0.97367 0.96548 1.69922 1.43346 1.31174 1.09129 0.86527 0.78425 0.84599 0.78156 1.20588 1.21088 1.19798 1.21659 0.94098 0.95961 0.89335 1.21003 0.95643 0.95924 0.96205 1.22042 1.00654 0.99873 0.97602 1.21811 0.98848 1.01704 0.97219 1.22235 0.98973 0.99537 1.00250 1.18105 0.85235 0.83343 0.79470 1.91007 1.68760 1.27448 1.52827 1.69778 1.05547 1.28073 1.25306 0.89763 0.89177 0.89310 0.82757 0.88613 0.88137 0.89523 0.86089 0.85159 0.93362 0.94275 0.92789 0.89402 0.91609 0.92122 0.93490 0.90932 0.92813 0.92585 0.92220 0.92363 0.92079 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.19 36.01 0.37 -0.57 16 2 C 0.27 3.48 6.84 -82.04 -0.56 2.92 16 3 C -0.30 -3.27 9.42 -39.79 -0.37 -3.64 16 4 C 0.23 2.83 6.68 -81.60 -0.55 2.28 16 5 C -0.14 -1.10 8.97 36.01 0.32 -0.77 16 6 N -0.49 -8.23 2.09 -118.41 -0.25 -8.47 16 7 C 0.05 0.75 3.61 -5.20 -0.02 0.73 16 8 C 0.50 10.40 6.25 -10.98 -0.07 10.33 16 9 O -0.53 -13.65 16.07 5.55 0.09 -13.56 16 10 N -0.58 -11.96 1.98 -175.07 -0.35 -12.31 16 11 C 0.24 6.14 4.00 -5.20 -0.02 6.12 16 12 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 13 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 16 Si 0.90 22.82 29.54 -169.99 -5.02 17.80 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.27 -7.16 7.11 56.52 0.40 -6.76 16 20 C 0.11 1.78 4.56 -4.05 -0.02 1.76 16 21 C -0.09 -1.06 0.84 -154.51 -0.13 -1.19 16 22 C -0.14 -2.03 7.11 37.16 0.26 -1.77 16 23 C -0.14 -1.34 8.47 37.16 0.31 -1.03 16 24 C -0.15 -1.56 6.63 37.16 0.25 -1.31 16 25 C 0.64 13.15 8.32 -88.18 -0.73 12.41 16 26 O -0.53 -13.02 16.80 4.96 0.08 -12.94 16 27 N -0.55 -10.17 10.39 -12.80 -0.13 -10.30 16 28 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 34 H 0.09 0.86 5.48 -51.93 -0.28 0.58 16 35 H 0.12 1.93 6.26 -51.93 -0.33 1.60 16 36 H 0.13 1.48 2.35 -51.93 -0.12 1.36 16 37 H 0.05 1.19 5.47 -51.93 -0.28 0.91 16 38 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 41 H 0.07 0.90 6.11 -51.93 -0.32 0.58 16 42 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 1.23 5.67 -51.93 -0.29 0.93 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.69 4.62 -51.93 -0.24 0.45 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -40.30 389.81 -7.96 -48.27 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.62 Total: -0.90 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -1.38 Total: 12.45 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.01 Total: -56.99 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: 0.17 Total: -26.50 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -40.30 -7.96 -48.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274164955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.369 kcal (2) G-P(sol) polarization free energy of solvation -40.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds