Wall clock time and date at job start Tue Mar 31 2020 19:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39807 * 120.08481 * 2 1 4 4 C 1.36028 * 119.07978 * 180.24679 * 3 2 1 5 5 C 1.50700 * 120.40358 * 179.73986 * 4 3 2 6 6 N 1.35871 * 119.18964 * 359.46422 * 4 3 2 7 7 C 1.46499 * 119.93514 * 180.29693 * 6 4 3 8 8 C 1.50697 * 109.47101 * 93.85915 * 7 6 4 9 9 O 1.21285 * 119.99921 * 353.32286 * 8 7 6 10 10 N 1.34783 * 120.00086 * 173.31647 * 8 7 6 11 11 C 1.46499 * 119.99937 * 175.45509 * 10 8 7 12 12 C 1.50694 * 109.47342 * 90.00335 * 11 10 8 13 13 H 1.07999 * 119.99851 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99521 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00152 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47232 * 89.99734 * 16 14 12 18 18 H 1.48500 * 109.47028 * 209.99552 * 16 14 12 19 19 H 1.48502 * 109.47129 * 329.99567 * 16 14 12 20 20 C 1.46501 * 119.99797 * 355.45521 * 10 8 7 21 21 C 1.52992 * 109.46960 * 94.73076 * 20 10 8 22 22 C 1.53001 * 109.47131 * 59.07773 * 21 20 10 23 23 C 1.53006 * 109.46983 * 179.07724 * 21 20 10 24 24 C 1.53004 * 109.47375 * 299.07286 * 21 20 10 25 25 C 1.34615 * 120.12692 * 0.27764 * 6 4 3 26 26 O 1.21957 * 119.52517 * 179.97438 * 25 6 4 27 27 N 1.31759 * 120.08518 * 179.70927 * 2 1 3 28 28 H 1.08998 * 109.47464 * 180.28763 * 1 2 3 29 29 H 1.08997 * 109.47372 * 300.29575 * 1 2 3 30 30 H 1.09002 * 109.46788 * 60.29115 * 1 2 3 31 31 H 1.07999 * 120.46366 * 0.02562 * 3 2 1 32 32 H 1.08994 * 109.46928 * 264.32747 * 5 4 3 33 33 H 1.09000 * 109.47415 * 24.32982 * 5 4 3 34 34 H 1.09006 * 109.46648 * 144.33064 * 5 4 3 35 35 H 1.09004 * 109.46891 * 213.86049 * 7 6 4 36 36 H 1.08996 * 109.46915 * 333.86166 * 7 6 4 37 37 H 1.09001 * 109.46480 * 210.00181 * 11 10 8 38 38 H 1.08998 * 109.47147 * 329.99637 * 11 10 8 39 39 H 0.97003 * 119.99400 * 180.02562 * 15 14 12 40 40 H 1.08995 * 109.46742 * 214.73286 * 20 10 8 41 41 H 1.09001 * 109.47294 * 334.73050 * 20 10 8 42 42 H 1.08999 * 109.47012 * 59.99859 * 22 21 20 43 43 H 1.09003 * 109.46852 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47273 * 299.99472 * 22 21 20 45 45 H 1.08996 * 109.47407 * 59.99944 * 23 21 20 46 46 H 1.08997 * 109.47190 * 180.02562 * 23 21 20 47 47 H 1.08999 * 109.46669 * 299.99988 * 23 21 20 48 48 H 1.08996 * 109.46696 * 58.28638 * 24 21 20 49 49 H 1.09003 * 109.47050 * 178.28244 * 24 21 20 50 50 H 1.08993 * 109.47153 * 298.28490 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.2097 0.0000 4 6 3.5679 1.1859 -0.0051 5 6 4.3532 2.4721 -0.0112 6 7 4.2097 -0.0117 0.0010 7 6 5.6740 -0.0564 0.0022 8 6 6.1722 -0.1606 1.4206 9 8 5.3923 -0.0724 2.3453 10 7 7.4844 -0.3519 1.6617 11 6 7.9835 -0.3537 3.0390 12 6 7.9362 -1.7560 3.5887 13 1 7.5705 -2.5650 2.9737 14 6 8.3587 -2.0061 4.8771 15 7 8.8036 -1.0208 5.6261 16 14 8.2994 -3.7442 5.5587 17 1 9.5823 -4.4337 5.2689 18 1 8.0857 -3.6930 7.0273 19 1 7.1829 -4.4879 4.9217 20 6 8.4116 -0.5580 0.5463 21 6 9.0457 0.7786 0.1566 22 6 9.7883 1.3612 1.3608 23 6 10.0312 0.5596 -0.9932 24 6 7.9519 1.7518 -0.2878 25 6 3.5026 -1.1572 0.0063 26 8 4.0899 -2.2260 0.0113 27 7 2.1675 -1.1401 0.0058 28 1 -0.3634 -1.0276 0.0052 29 1 -0.3634 0.5184 0.8873 30 1 -0.3633 0.5093 -0.8926 31 1 1.6768 2.1502 0.0004 32 1 4.6253 2.7267 -1.0354 33 1 3.7450 3.2712 0.4126 34 1 5.2574 2.3484 0.5850 35 1 6.0115 -0.9232 -0.5661 36 1 6.0656 0.8525 -0.4546 37 1 9.0118 0.0077 3.0532 38 1 7.3609 0.2981 3.6519 39 1 9.1012 -1.1969 6.5324 40 1 9.1923 -1.2566 0.8472 41 1 7.8689 -0.9652 -0.3069 42 1 10.5675 0.6679 1.6773 43 1 10.2404 2.3133 1.0830 44 1 9.0862 1.5173 2.1798 45 1 9.5023 0.1446 -1.8511 46 1 10.4834 1.5118 -1.2705 47 1 10.8105 -0.1337 -0.6766 48 1 7.2331 1.8842 0.5208 49 1 8.4004 2.7137 -0.5364 50 1 7.4431 1.3509 -1.1643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274164955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:01 Heat of formation + Delta-G solvation = -50.569872 kcal Electronic energy + Delta-G solvation = -31221.119217 eV Core-core repulsion = 27248.305704 eV Total energy + Delta-G solvation = -3972.813514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.07926 -41.09849 -38.60299 -38.54300 -37.23030 -35.71260 -34.44398 -33.34914 -31.88971 -30.59580 -29.41006 -28.20148 -28.08645 -27.53526 -26.97451 -24.85145 -24.16005 -22.87394 -20.96798 -19.80448 -19.53551 -18.81110 -18.70982 -18.05753 -17.30069 -17.13278 -16.87609 -16.71627 -16.20250 -15.34033 -15.11908 -15.02173 -14.86988 -14.76066 -14.61307 -14.53807 -14.37125 -14.08843 -14.08090 -13.67585 -13.54232 -13.26917 -13.23221 -13.03264 -12.97279 -12.82253 -12.66106 -12.54671 -12.41436 -12.35300 -12.22819 -12.05848 -12.01903 -11.81212 -11.73014 -11.57619 -11.44338 -10.78789 -10.70555 -10.66208 -9.52890 -9.50374 -8.29995 -6.42457 -0.38920 0.62167 1.20400 1.26096 1.29313 1.40052 1.54726 2.15689 2.32995 2.68801 2.99142 3.14525 3.22819 3.39260 3.55189 3.64970 3.76063 3.84616 3.93300 4.07728 4.23789 4.35533 4.37935 4.45623 4.55806 4.57595 4.62894 4.72590 4.79232 4.82459 4.86330 4.90210 4.92328 4.96872 5.00592 5.07481 5.07522 5.15822 5.17963 5.20310 5.37235 5.40969 5.43833 5.48264 5.52361 5.56864 5.76406 6.02309 6.54491 6.66060 6.69145 7.06682 7.15131 7.30814 8.76168 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009858 B = 0.004593 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.734590 B = 6094.698926 C = 7927.338221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.261 3.739 3 C -0.286 4.286 4 C 0.208 3.792 5 C -0.134 4.134 6 N -0.500 5.500 7 C 0.065 3.935 8 C 0.490 3.510 9 O -0.589 6.589 10 N -0.584 5.584 11 C 0.264 3.736 12 C -0.549 4.549 13 H 0.035 0.965 14 C 0.018 3.982 15 N -0.919 5.919 16 Si 0.955 3.045 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.289 1.289 20 C 0.104 3.896 21 C -0.079 4.079 22 C -0.142 4.142 23 C -0.132 4.132 24 C -0.155 4.155 25 C 0.620 3.380 26 O -0.599 6.599 27 N -0.605 5.605 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.211 0.789 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.180 0.820 37 H 0.053 0.947 38 H -0.005 1.005 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.051 0.949 48 H 0.037 0.963 49 H 0.089 0.911 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 16.094 -19.931 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 C -0.310 4.310 4 C 0.090 3.910 5 C -0.191 4.191 6 N -0.213 5.213 7 C -0.061 4.061 8 C 0.277 3.723 9 O -0.470 6.470 10 N -0.314 5.314 11 C 0.143 3.857 12 C -0.588 4.588 13 H 0.053 0.947 14 C -0.182 4.182 15 N -0.558 5.558 16 Si 0.780 3.220 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.215 1.215 20 C -0.018 4.018 21 C -0.080 4.080 22 C -0.199 4.199 23 C -0.190 4.190 24 C -0.211 4.211 25 C 0.324 3.676 26 O -0.479 6.479 27 N -0.343 5.343 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.227 0.773 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.013 0.987 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.070 0.930 48 H 0.056 0.944 49 H 0.107 0.893 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.133 14.538 -19.251 25.156 hybrid contribution 0.610 -1.101 1.381 1.869 sum -6.523 13.437 -17.870 23.291 Atomic orbital electron populations 1.21126 0.84248 1.05039 1.06383 1.23101 0.99967 0.87857 0.78679 1.21794 0.91326 1.01778 1.16057 1.22109 0.94803 0.87732 0.86319 1.21511 1.00358 0.90567 1.06617 1.46047 1.08827 1.07904 1.58553 1.22654 0.78611 1.09439 0.95350 1.21009 0.82834 0.77115 0.91302 1.90678 1.55785 1.52967 1.47570 1.48072 1.06439 1.68000 1.08883 1.18954 0.94560 0.94933 0.77234 1.21708 1.42872 0.94969 0.99231 0.94698 1.25648 0.94612 1.01227 0.96730 1.69999 1.43504 1.32823 1.09517 0.85618 0.78660 0.80013 0.77741 1.18232 1.19813 1.21476 1.22025 0.93172 0.98409 0.88199 1.20956 0.96676 0.93940 0.96433 1.21985 0.99546 1.01025 0.97389 1.21777 0.98016 1.02865 0.96323 1.22253 0.98043 1.00412 1.00432 1.18448 0.86224 0.83589 0.79379 1.90918 1.70156 1.29984 1.56828 1.69730 1.04744 1.31104 1.28769 0.91227 0.86690 0.85358 0.77262 0.84526 0.85034 0.91568 0.86412 0.80340 0.92917 0.98712 0.92250 0.91190 0.89312 0.93903 0.90691 0.94636 0.90902 0.90453 0.93020 0.94384 0.89265 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.19 71.24 0.73 -0.77 16 2 C 0.26 6.40 6.84 42.95 0.29 6.69 16 3 C -0.29 -5.18 9.42 22.14 0.21 -4.97 16 4 C 0.21 4.68 6.68 41.42 0.28 4.96 16 5 C -0.13 -1.62 8.97 71.24 0.64 -0.98 16 6 N -0.50 -16.80 2.09 -646.74 -1.35 -18.16 16 7 C 0.06 2.06 3.61 85.63 0.31 2.37 16 8 C 0.49 21.62 6.25 87.65 0.55 22.17 16 9 O -0.59 -32.65 16.07 -3.04 -0.05 -32.70 16 10 N -0.58 -25.34 1.98 -826.18 -1.64 -26.98 16 11 C 0.26 14.37 4.00 85.63 0.34 14.71 16 12 C -0.55 -33.86 9.39 25.60 0.24 -33.62 16 13 H 0.03 2.25 7.81 -2.91 -0.02 2.23 16 14 C 0.02 1.06 5.46 84.65 0.46 1.52 16 15 N -0.92 -56.43 13.29 21.45 0.28 -56.15 16 16 Si 0.95 48.32 29.54 68.60 2.03 50.34 16 17 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 20 C 0.10 3.33 4.56 86.38 0.39 3.73 16 21 C -0.08 -1.81 0.84 -52.18 -0.04 -1.86 16 22 C -0.14 -3.99 7.11 71.98 0.51 -3.47 16 23 C -0.13 -2.15 8.47 71.98 0.61 -1.54 16 24 C -0.15 -2.65 6.63 71.98 0.48 -2.18 16 25 C 0.62 27.02 8.32 179.50 1.49 28.51 16 26 O -0.60 -32.05 16.80 -5.17 -0.09 -32.14 16 27 N -0.61 -23.08 10.39 -313.21 -3.25 -26.34 16 28 H 0.07 1.18 8.11 -2.39 -0.02 1.16 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.13 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.13 0.82 8.05 -2.39 -0.02 0.80 16 34 H 0.07 1.15 5.48 -2.38 -0.01 1.14 16 35 H 0.12 3.83 6.26 -2.38 -0.01 3.82 16 36 H 0.18 3.68 2.35 -2.39 -0.01 3.67 16 37 H 0.05 2.79 5.47 -2.39 -0.01 2.78 16 38 H -0.01 -0.33 7.49 -2.39 -0.02 -0.34 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 41 H 0.09 2.41 6.11 -2.39 -0.01 2.39 16 42 H 0.04 1.32 8.00 -2.39 -0.02 1.30 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.03 1.25 5.67 -2.39 -0.01 1.23 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.04 0.83 4.62 -2.39 -0.01 0.82 16 49 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.08 0.97 6.56 -2.39 -0.02 0.95 16 Total: -1.00 -101.47 389.81 4.37 -97.10 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.95 Total: 9.75 kcal Atomic # 6 Polarization: 27.78 SS G_CDS: 7.49 Total: 35.27 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -5.96 Total: -127.62 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: -0.14 Total: -64.84 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.34 kcal Total: -101.47 4.37 -97.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274164955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.534 kcal (2) G-P(sol) polarization free energy of solvation -101.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds