Wall clock time and date at job start Tue Mar 31 2020 19:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 110.89122 * 2 1 4 4 N 1.46506 * 109.46729 * 62.43135 * 3 2 1 5 5 C 1.34776 * 119.99697 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00459 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99687 * 179.97438 * 5 4 3 8 8 C 1.52997 * 109.47041 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47240 * 180.02562 * 8 7 5 10 10 C 1.47197 * 109.47192 * 180.02562 * 9 8 7 11 11 N 9.60788 * 96.49309 * 24.64821 * 2 1 3 12 12 C 1.55156 * 111.00552 * 123.88850 * 2 1 3 13 13 C 1.54316 * 102.94559 * 82.60533 * 12 2 1 14 14 N 1.47023 * 107.27276 * 22.19474 * 13 12 2 15 15 C 1.34777 * 125.65037 * 181.01937 * 14 13 12 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.30479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.50697 * 109.47491 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99437 * 359.97438 * 19 18 17 21 21 C 1.37869 * 120.00278 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00194 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00110 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47052 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47156 * 119.99884 * 23 21 19 26 26 H 1.48498 * 109.47200 * 239.99869 * 23 21 19 27 27 C 1.47423 * 108.69861 * 1.28833 * 14 13 12 28 28 H 1.09004 * 109.47267 * 297.57196 * 1 2 3 29 29 H 1.09001 * 109.47126 * 57.56431 * 1 2 3 30 30 H 1.08999 * 109.47482 * 177.56695 * 1 2 3 31 31 H 1.09002 * 109.47402 * 182.42678 * 3 2 1 32 32 H 1.08997 * 109.47060 * 302.43286 * 3 2 1 33 33 H 0.97006 * 119.99905 * 359.97438 * 4 3 2 34 34 H 1.08992 * 109.47250 * 299.99951 * 7 5 4 35 35 H 1.09006 * 109.47071 * 60.00224 * 7 5 4 36 36 H 1.08992 * 109.47421 * 300.00291 * 8 7 5 37 37 H 1.09006 * 109.46641 * 60.00406 * 8 7 5 38 38 H 1.09002 * 109.47099 * 300.00400 * 9 8 7 39 39 H 1.09001 * 109.46372 * 60.00294 * 9 8 7 40 40 H 1.09004 * 110.71752 * 324.24228 * 12 2 1 41 41 H 1.09000 * 110.87016 * 201.04542 * 12 2 1 42 42 H 1.08997 * 109.88569 * 262.77576 * 13 12 2 43 43 H 1.09008 * 109.88164 * 141.61349 * 13 12 2 44 44 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 45 45 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 46 46 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 47 47 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 48 48 H 0.97004 * 120.00291 * 180.02562 * 22 21 19 49 49 H 1.09004 * 110.36778 * 94.48512 * 27 14 13 50 50 H 1.09006 * 110.36423 * 216.80164 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.6523 2.1135 1.2245 5 6 2.0179 3.3923 1.4426 6 8 2.6975 3.9765 0.6255 7 6 1.5822 4.0962 2.7019 8 6 2.1278 5.5256 2.7020 9 6 1.6860 6.2401 3.9808 10 6 2.2104 7.6154 3.9806 11 7 2.6164 8.6764 3.9812 12 6 2.0861 -0.8076 1.2024 13 6 2.0293 -2.2643 0.6963 14 7 2.0151 -2.2157 -0.7730 15 6 1.9492 -3.2828 -1.5937 16 8 1.9443 -3.1237 -2.7960 17 6 1.8750 -4.6733 -1.0172 18 6 1.8025 -5.6938 -2.1548 19 6 1.7290 -7.0842 -1.5784 20 1 1.7340 -7.2259 -0.5078 21 6 1.6553 -8.1755 -2.4178 22 7 1.6487 -8.0030 -3.7216 23 14 1.5650 -9.8991 -1.7033 24 1 1.5889 -9.8221 -0.2206 25 1 0.3070 -10.5528 -2.1453 26 1 2.7277 -10.6925 -2.1762 27 6 2.0915 -0.8068 -1.2001 28 1 -0.3634 0.4757 0.9110 29 1 -0.3633 0.5512 -0.8673 30 1 -0.3634 -1.0267 -0.0436 31 1 3.1643 1.4028 -0.0435 32 1 1.6901 1.9654 -0.8673 33 1 1.1084 1.6463 1.8778 34 1 0.4934 4.1226 2.7452 35 1 1.9675 3.5605 3.5695 36 1 3.2166 5.4989 2.6588 37 1 1.7428 6.0615 1.8344 38 1 0.5971 6.2667 4.0244 39 1 2.0714 5.7039 4.8480 40 1 1.4519 -0.6791 2.0796 41 1 3.1127 -0.5162 1.4244 42 1 1.1228 -2.7481 1.0600 43 1 2.9073 -2.8109 1.0407 44 1 2.7626 -4.8642 -0.4139 45 1 0.9857 -4.7609 -0.3932 46 1 0.9149 -5.5028 -2.7581 47 1 2.6918 -5.6061 -2.7789 48 1 1.5965 -8.7707 -4.3122 49 1 3.1260 -0.5260 -1.3982 50 1 1.4774 -0.6451 -2.0861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291559622.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:28 Heat of formation + Delta-G solvation = -73.901998 kcal Electronic energy + Delta-G solvation = -27747.942989 eV Core-core repulsion = 23774.117718 eV Total energy + Delta-G solvation = -3973.825271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.62934 -39.78533 -37.98441 -37.41932 -35.27284 -34.77089 -33.49362 -32.61358 -30.92618 -29.94121 -29.50241 -27.51665 -26.57758 -25.06620 -23.22521 -23.05222 -21.33234 -20.70724 -19.64444 -18.71132 -18.38381 -17.18171 -16.87988 -16.71422 -16.53363 -15.88317 -15.65027 -15.54030 -14.89084 -14.55898 -14.50352 -14.43264 -14.29361 -14.05157 -13.92024 -13.62529 -13.23540 -13.03120 -12.82341 -12.53266 -12.50675 -12.32314 -12.29218 -12.17400 -12.03105 -12.00991 -11.83702 -11.38794 -11.28037 -11.17144 -11.05008 -10.97704 -10.95429 -10.59487 -10.28338 -9.97789 -9.68022 -9.48427 -9.20399 -9.03738 -8.45115 -8.33373 -5.97708 -4.02248 2.22324 2.23001 2.30133 2.70007 3.19015 3.23890 3.30997 3.38385 3.41322 3.44741 4.03449 4.08563 4.22983 4.30808 4.38692 4.41162 4.45835 4.69824 4.74999 4.76427 4.86106 4.90343 4.95689 4.98910 5.20681 5.29316 5.37392 5.38733 5.41237 5.44079 5.53879 5.56823 5.61248 5.65980 5.68666 5.75392 5.83834 5.98857 5.99418 6.19288 6.21234 6.48899 6.86404 7.04205 7.07349 7.72838 7.79610 7.80761 7.84125 8.05363 8.36437 8.70678 9.06331 9.61480 11.13291 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040635 B = 0.001507 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.898373 B =18578.204068 C =18944.128210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C 0.136 3.864 4 N -0.727 5.727 5 C 0.510 3.490 6 O -0.539 6.539 7 C -0.140 4.140 8 C -0.103 4.103 9 C -0.026 4.026 10 C 0.205 3.795 11 N -0.437 5.437 12 C -0.122 4.122 13 C 0.104 3.896 14 N -0.629 5.629 15 C 0.526 3.474 16 O -0.531 6.531 17 C -0.123 4.123 18 C 0.036 3.964 19 C -0.526 4.526 20 H 0.056 0.944 21 C 0.058 3.942 22 N -0.889 5.889 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.119 3.881 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.401 0.599 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.260 0.740 49 H 0.066 0.934 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 24.134 19.572 31.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C 0.012 3.988 4 N -0.379 5.379 5 C 0.296 3.704 6 O -0.415 6.415 7 C -0.180 4.180 8 C -0.143 4.143 9 C -0.066 4.066 10 C -0.113 4.113 11 N -0.114 5.114 12 C -0.160 4.160 13 C -0.019 4.019 14 N -0.367 5.367 15 C 0.317 3.683 16 O -0.406 6.406 17 C -0.163 4.163 18 C -0.002 4.002 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.005 4.005 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.236 0.764 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.042 0.958 47 H 0.042 0.958 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.339 26.036 18.077 31.782 hybrid contribution -0.465 -1.711 0.700 1.907 sum -2.804 24.325 18.777 30.857 Atomic orbital electron populations 1.21743 0.92676 1.02958 1.01866 1.22043 0.96812 0.93588 0.96596 1.21254 0.99818 0.90503 0.87201 1.45994 1.55284 1.13306 1.23358 1.20642 0.79889 0.81571 0.88281 1.90754 1.38047 1.65645 1.47077 1.21647 1.03273 0.96385 0.96721 1.21287 1.02825 0.93682 0.96476 1.19334 1.02268 0.84036 1.00999 1.29182 0.93667 0.95041 0.93425 1.81270 1.09064 1.12727 1.08297 1.22765 1.01977 0.94095 0.97183 1.21934 1.02179 0.96868 0.80922 1.48675 1.75770 1.05701 1.06538 1.21341 0.74416 0.86244 0.86281 1.90686 1.48893 1.86086 1.14943 1.21845 1.02274 0.89893 1.02302 1.18921 0.98605 0.90881 0.91760 1.21238 1.51117 0.91214 0.92886 0.92576 1.25020 0.95309 0.99207 0.94803 1.70008 1.50139 1.30380 1.02263 0.86545 0.77622 0.84665 0.79184 1.19745 1.21013 1.21014 1.22099 1.00730 0.81264 0.96392 0.92463 0.92012 0.91545 0.90911 0.90897 0.76413 0.88213 0.88186 0.90110 0.90118 0.87164 0.87143 0.90065 0.90262 0.91238 0.91252 0.90344 0.90353 0.95822 0.95821 0.92988 0.91555 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.41 37.15 0.31 -0.58 16 2 C -0.09 -0.62 0.62 -152.24 -0.09 -0.72 16 3 C 0.14 0.91 4.65 -4.04 -0.02 0.89 16 4 N -0.73 -3.27 5.13 -60.29 -0.31 -3.58 16 5 C 0.51 2.99 7.83 -10.98 -0.09 2.91 16 6 O -0.54 -5.81 15.98 5.56 0.09 -5.72 16 7 C -0.14 -0.18 5.70 -27.88 -0.16 -0.34 16 8 C -0.10 -0.28 4.46 -26.73 -0.12 -0.39 16 9 C -0.03 -0.02 5.70 -29.52 -0.17 -0.18 16 10 C 0.20 1.16 15.43 -20.76 -0.32 0.84 16 11 N -0.44 -4.23 18.54 42.15 0.78 -3.45 16 12 C -0.12 -0.73 5.38 -24.90 -0.13 -0.86 16 13 C 0.10 0.99 6.15 -3.07 -0.02 0.97 16 14 N -0.63 -8.64 3.31 -170.38 -0.56 -9.21 16 15 C 0.53 10.09 7.85 -10.98 -0.09 10.01 16 16 O -0.53 -12.57 16.24 5.55 0.09 -12.48 16 17 C -0.12 -2.48 4.83 -27.88 -0.13 -2.61 16 18 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 19 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 23 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.12 1.34 5.85 -2.41 -0.01 1.33 16 28 H 0.06 0.24 7.19 -51.93 -0.37 -0.13 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 31 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.40 0.75 7.17 -40.82 -0.29 0.45 16 34 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 35 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 36 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 37 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 38 H 0.11 -0.18 8.14 -51.93 -0.42 -0.60 16 39 H 0.11 -0.18 8.14 -51.93 -0.42 -0.60 16 40 H 0.08 0.29 7.95 -51.93 -0.41 -0.12 16 41 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 44 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 50 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 LS Contribution 417.21 15.07 6.29 6.29 Total: -1.00 -39.74 417.21 -8.09 -47.83 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -8.61 Total: -8.13 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.57 Total: -1.41 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.64 Total: -42.76 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.18 Total: -18.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -39.74 -8.09 -47.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291559622.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.069 kcal (2) G-P(sol) polarization free energy of solvation -39.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds