Wall clock time and date at job start Tue Mar 31 2020 19:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 110.89122 * 2 1 4 4 N 1.46506 * 109.46729 * 62.43135 * 3 2 1 5 5 C 1.34776 * 119.99697 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00459 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99687 * 179.97438 * 5 4 3 8 8 C 1.52997 * 109.47041 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47240 * 180.02562 * 8 7 5 10 10 C 1.47197 * 109.47192 * 180.02562 * 9 8 7 11 11 N 9.60788 * 96.49309 * 24.64821 * 2 1 3 12 12 C 1.55156 * 111.00552 * 123.88850 * 2 1 3 13 13 C 1.54316 * 102.94559 * 82.60533 * 12 2 1 14 14 N 1.47023 * 107.27276 * 22.19474 * 13 12 2 15 15 C 1.34777 * 125.65037 * 181.01937 * 14 13 12 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.30479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.50697 * 109.47491 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99437 * 359.97438 * 19 18 17 21 21 C 1.37869 * 120.00278 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00194 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00110 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47052 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47156 * 119.99884 * 23 21 19 26 26 H 1.48498 * 109.47200 * 239.99869 * 23 21 19 27 27 C 1.47423 * 108.69861 * 1.28833 * 14 13 12 28 28 H 1.09004 * 109.47267 * 297.57196 * 1 2 3 29 29 H 1.09001 * 109.47126 * 57.56431 * 1 2 3 30 30 H 1.08999 * 109.47482 * 177.56695 * 1 2 3 31 31 H 1.09002 * 109.47402 * 182.42678 * 3 2 1 32 32 H 1.08997 * 109.47060 * 302.43286 * 3 2 1 33 33 H 0.97006 * 119.99905 * 359.97438 * 4 3 2 34 34 H 1.08992 * 109.47250 * 299.99951 * 7 5 4 35 35 H 1.09006 * 109.47071 * 60.00224 * 7 5 4 36 36 H 1.08992 * 109.47421 * 300.00291 * 8 7 5 37 37 H 1.09006 * 109.46641 * 60.00406 * 8 7 5 38 38 H 1.09002 * 109.47099 * 300.00400 * 9 8 7 39 39 H 1.09001 * 109.46372 * 60.00294 * 9 8 7 40 40 H 1.09004 * 110.71752 * 324.24228 * 12 2 1 41 41 H 1.09000 * 110.87016 * 201.04542 * 12 2 1 42 42 H 1.08997 * 109.88569 * 262.77576 * 13 12 2 43 43 H 1.09008 * 109.88164 * 141.61349 * 13 12 2 44 44 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 45 45 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 46 46 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 47 47 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 48 48 H 0.97004 * 120.00291 * 180.02562 * 22 21 19 49 49 H 1.09004 * 110.36778 * 94.48512 * 27 14 13 50 50 H 1.09006 * 110.36423 * 216.80164 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.6523 2.1135 1.2245 5 6 2.0179 3.3923 1.4426 6 8 2.6975 3.9765 0.6255 7 6 1.5822 4.0962 2.7019 8 6 2.1278 5.5256 2.7020 9 6 1.6860 6.2401 3.9808 10 6 2.2104 7.6154 3.9806 11 7 2.6164 8.6764 3.9812 12 6 2.0861 -0.8076 1.2024 13 6 2.0293 -2.2643 0.6963 14 7 2.0151 -2.2157 -0.7730 15 6 1.9492 -3.2828 -1.5937 16 8 1.9443 -3.1237 -2.7960 17 6 1.8750 -4.6733 -1.0172 18 6 1.8025 -5.6938 -2.1548 19 6 1.7290 -7.0842 -1.5784 20 1 1.7340 -7.2259 -0.5078 21 6 1.6553 -8.1755 -2.4178 22 7 1.6487 -8.0030 -3.7216 23 14 1.5650 -9.8991 -1.7033 24 1 1.5889 -9.8221 -0.2206 25 1 0.3070 -10.5528 -2.1453 26 1 2.7277 -10.6925 -2.1762 27 6 2.0915 -0.8068 -1.2001 28 1 -0.3634 0.4757 0.9110 29 1 -0.3633 0.5512 -0.8673 30 1 -0.3634 -1.0267 -0.0436 31 1 3.1643 1.4028 -0.0435 32 1 1.6901 1.9654 -0.8673 33 1 1.1084 1.6463 1.8778 34 1 0.4934 4.1226 2.7452 35 1 1.9675 3.5605 3.5695 36 1 3.2166 5.4989 2.6588 37 1 1.7428 6.0615 1.8344 38 1 0.5971 6.2667 4.0244 39 1 2.0714 5.7039 4.8480 40 1 1.4519 -0.6791 2.0796 41 1 3.1127 -0.5162 1.4244 42 1 1.1228 -2.7481 1.0600 43 1 2.9073 -2.8109 1.0407 44 1 2.7626 -4.8642 -0.4139 45 1 0.9857 -4.7609 -0.3932 46 1 0.9149 -5.5028 -2.7581 47 1 2.6918 -5.6061 -2.7789 48 1 1.5965 -8.7707 -4.3122 49 1 3.1260 -0.5260 -1.3982 50 1 1.4774 -0.6451 -2.0861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291559622.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:27 Heat of formation + Delta-G solvation = -102.821753 kcal Electronic energy + Delta-G solvation = -27749.197044 eV Core-core repulsion = 23774.117718 eV Total energy + Delta-G solvation = -3975.079325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.43961 -40.56727 -39.13417 -37.87895 -36.01419 -35.57848 -35.09813 -33.57552 -32.74243 -30.65340 -29.82086 -28.58078 -27.59697 -26.40516 -24.23991 -23.43483 -22.97457 -21.16218 -20.36918 -19.89152 -18.88083 -18.66209 -17.67438 -17.42155 -17.31196 -16.91539 -16.52053 -16.47759 -16.14932 -15.88550 -15.49905 -15.08145 -14.97095 -14.74487 -14.52030 -14.33587 -14.18137 -14.05732 -13.84891 -13.63499 -13.59952 -13.38529 -13.15148 -12.90238 -12.82369 -12.68239 -12.56670 -12.44018 -12.40445 -12.22513 -11.96529 -11.94100 -11.65642 -11.60762 -11.57673 -11.50023 -11.27859 -10.83770 -10.70261 -10.57559 -9.97737 -9.61075 -8.17524 -6.31938 1.43154 1.44697 1.57959 1.68029 1.82137 1.83639 1.91422 1.99366 2.38359 2.44622 3.15808 3.21584 3.37190 3.49539 3.77679 3.91101 3.99904 4.09388 4.22894 4.25935 4.27972 4.34553 4.47028 4.51261 4.57003 4.59313 4.73157 4.76694 4.78668 4.83633 4.86339 4.92327 4.95063 4.99319 5.05516 5.06930 5.17120 5.20944 5.30608 5.39592 5.43997 5.46186 5.51793 5.57383 5.61800 5.84980 6.17263 6.51758 6.70913 6.72997 6.86877 7.25030 7.38796 7.45114 8.95545 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040635 B = 0.001507 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.898373 B =18578.204068 C =18944.128210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C 0.144 3.856 4 N -0.712 5.712 5 C 0.503 3.497 6 O -0.598 6.598 7 C -0.128 4.128 8 C -0.103 4.103 9 C -0.018 4.018 10 C 0.232 3.768 11 N -0.521 5.521 12 C -0.109 4.109 13 C 0.090 3.910 14 N -0.619 5.619 15 C 0.521 3.479 16 O -0.594 6.594 17 C -0.109 4.109 18 C 0.041 3.959 19 C -0.540 4.540 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.939 5.939 23 Si 0.974 3.026 24 H -0.250 1.250 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.108 3.892 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.419 0.581 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.104 0.896 46 H -0.019 1.019 47 H -0.021 1.021 48 H 0.262 0.738 49 H 0.064 0.936 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 23.426 24.921 34.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.071 4.071 3 C 0.019 3.981 4 N -0.365 5.365 5 C 0.291 3.709 6 O -0.479 6.479 7 C -0.167 4.167 8 C -0.143 4.143 9 C -0.057 4.057 10 C -0.084 4.084 11 N -0.200 5.200 12 C -0.146 4.146 13 C -0.032 4.032 14 N -0.353 5.353 15 C 0.312 3.688 16 O -0.475 6.475 17 C -0.149 4.149 18 C 0.004 3.996 19 C -0.578 4.578 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.579 5.579 23 Si 0.798 3.202 24 H -0.173 1.173 25 H -0.206 1.206 26 H -0.208 1.208 27 C -0.016 4.016 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.258 0.742 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.142 0.858 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.122 0.878 46 H -0.001 1.001 47 H -0.002 1.002 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.794 25.348 23.538 34.799 hybrid contribution -0.012 -1.456 -1.009 1.772 sum -3.806 23.892 22.528 33.058 Atomic orbital electron populations 1.21756 0.91882 1.02127 1.03338 1.21850 0.97136 0.93138 0.94938 1.20968 0.99000 0.90144 0.87989 1.45824 1.54980 1.13057 1.22636 1.21575 0.78681 0.81510 0.89103 1.90746 1.40811 1.66935 1.49414 1.21701 1.05329 0.94600 0.95074 1.21207 1.01394 0.95007 0.96647 1.19688 1.04251 0.80804 1.00989 1.30224 0.91594 0.95607 0.90949 1.81290 1.11982 1.15604 1.11100 1.22816 1.03511 0.90791 0.97490 1.22386 1.03307 0.99871 0.77641 1.48548 1.72919 1.05383 1.08456 1.21111 0.74539 0.87330 0.85802 1.90658 1.52260 1.86992 1.17582 1.21568 1.04458 0.88860 0.99971 1.18706 0.94539 0.93327 0.93058 1.21722 1.50431 0.91666 0.93982 0.90403 1.26149 0.94636 1.04627 0.95029 1.70194 1.51486 1.31984 1.04271 0.85264 0.77498 0.77992 0.79433 1.17301 1.20647 1.20784 1.22310 1.00666 0.80675 0.97914 0.88680 0.93179 0.93236 0.92127 0.92704 0.74222 0.84686 0.84473 0.92547 0.92659 0.83575 0.83481 0.85818 0.89337 0.89793 0.90443 0.88099 0.87820 1.00059 1.00238 0.92893 0.91728 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.41 71.98 0.61 -0.81 16 2 C -0.07 -0.82 0.62 -50.72 -0.03 -0.85 16 3 C 0.14 1.71 4.65 86.38 0.40 2.11 16 4 N -0.71 -3.81 5.13 -463.05 -2.37 -6.19 16 5 C 0.50 4.55 7.83 87.66 0.69 5.24 16 6 O -0.60 -12.80 15.98 -3.01 -0.05 -12.85 16 7 C -0.13 0.28 5.70 29.85 0.17 0.45 16 8 C -0.10 -0.29 4.46 30.59 0.14 -0.16 16 9 C -0.02 0.05 5.70 28.79 0.16 0.22 16 10 C 0.23 2.34 15.43 89.44 1.38 3.72 16 11 N -0.52 -10.37 18.54 20.01 0.37 -10.00 16 12 C -0.11 -0.81 5.38 31.78 0.17 -0.64 16 13 C 0.09 1.40 6.15 86.73 0.53 1.94 16 14 N -0.62 -16.76 3.31 -811.34 -2.69 -19.45 16 15 C 0.52 20.72 7.85 87.66 0.69 21.41 16 16 O -0.59 -30.34 16.24 -3.04 -0.05 -30.39 16 17 C -0.11 -4.39 4.83 29.85 0.14 -4.24 16 18 C 0.04 2.32 4.26 29.85 0.13 2.45 16 19 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 20 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 21 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 22 N -0.94 -59.73 13.29 21.44 0.28 -59.45 16 23 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 24 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 C 0.11 2.47 5.85 86.93 0.51 2.98 16 28 H 0.09 0.30 7.19 -2.38 -0.02 0.28 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.73 7.89 -2.39 -0.02 0.71 16 31 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.42 -0.90 7.17 -92.70 -0.66 -1.57 16 34 H 0.14 -1.14 8.14 -2.39 -0.02 -1.16 16 35 H 0.14 -1.20 8.14 -2.38 -0.02 -1.22 16 36 H 0.06 0.44 8.10 -2.39 -0.02 0.42 16 37 H 0.05 0.44 8.10 -2.38 -0.02 0.42 16 38 H 0.15 -1.31 8.14 -2.39 -0.02 -1.33 16 39 H 0.15 -1.34 8.14 -2.39 -0.02 -1.36 16 40 H 0.12 0.01 7.95 -2.38 -0.02 -0.01 16 41 H 0.09 0.60 8.04 -2.39 -0.02 0.58 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 45 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 46 H -0.02 -1.21 8.10 -2.38 -0.02 -1.23 16 47 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 48 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 49 H 0.06 1.50 8.01 -2.39 -0.02 1.49 16 50 H 0.05 1.54 7.96 -2.38 -0.02 1.52 16 Total: -1.00 -99.33 417.21 4.16 -95.17 By element: Atomic # 1 Polarization: -6.46 SS G_CDS: 0.26 Total: -6.21 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.38 Total: 3.56 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -4.41 Total: -95.09 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.10 Total: -43.25 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -99.33 4.16 -95.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291559622.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.651 kcal (2) G-P(sol) polarization free energy of solvation -99.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds