Wall clock time and date at job start Tue Mar 31 2020 20:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.90117 * 2 1 4 4 N 1.40086 * 108.20944 * 180.26098 * 3 2 1 5 5 C 1.46495 * 126.04225 * 179.73996 * 4 3 2 6 6 C 1.50690 * 109.47400 * 269.98131 * 5 4 3 7 7 H 1.08004 * 120.00399 * 359.97438 * 6 5 4 8 8 C 1.37885 * 120.00252 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99472 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00135 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47245 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47218 * 119.99723 * 10 8 6 13 13 H 1.48502 * 109.47258 * 240.00204 * 10 8 6 14 14 C 1.34954 * 107.91886 * 359.72236 * 4 3 2 15 15 C 1.50705 * 126.12030 * 179.97438 * 14 4 3 16 16 C 1.35309 * 107.74977 * 359.97438 * 14 4 3 17 17 C 1.50700 * 126.04114 * 180.02562 * 16 14 4 18 18 C 1.52992 * 109.47257 * 89.99766 * 17 16 14 19 19 C 1.50700 * 109.47257 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00113 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.46494 * 119.99635 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.47001 * 180.02562 * 22 21 19 24 24 O 1.42895 * 112.85134 * 53.79884 * 23 22 21 25 25 C 1.53789 * 113.61229 * 282.49635 * 23 22 21 26 26 C 1.53779 * 87.08207 * 220.01669 * 25 23 22 27 27 C 1.53781 * 113.61775 * 185.00151 * 23 22 21 28 28 H 1.09004 * 109.46949 * 270.20411 * 1 2 3 29 29 H 1.08999 * 109.47109 * 30.20727 * 1 2 3 30 30 H 1.08995 * 109.47299 * 150.20687 * 1 2 3 31 31 H 1.09006 * 109.46532 * 29.98030 * 5 4 3 32 32 H 1.09003 * 109.47125 * 149.97640 * 5 4 3 33 33 H 0.97000 * 119.99820 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47455 * 270.02547 * 15 14 4 35 35 H 1.09000 * 109.47357 * 30.03371 * 15 14 4 36 36 H 1.09007 * 109.46282 * 150.02955 * 15 14 4 37 37 H 1.09004 * 109.46932 * 329.99545 * 17 16 14 38 38 H 1.09005 * 109.47238 * 209.99923 * 17 16 14 39 39 H 1.09004 * 109.47330 * 60.00023 * 18 17 16 40 40 H 1.08997 * 109.47279 * 300.00509 * 18 17 16 41 41 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 42 42 H 1.09005 * 109.47306 * 299.99972 * 22 21 19 43 43 H 1.09002 * 109.47518 * 60.00210 * 22 21 19 44 44 H 0.96701 * 114.00060 * 309.67177 * 24 23 22 45 45 H 1.08999 * 113.60975 * 334.56729 * 25 23 22 46 46 H 1.09000 * 113.61459 * 105.46573 * 25 23 22 47 47 H 1.08999 * 113.61755 * 270.88405 * 26 25 23 48 48 H 1.08997 * 113.61422 * 139.97317 * 26 25 23 49 49 H 1.08999 * 113.61463 * 254.52699 * 27 23 22 50 50 H 1.09000 * 113.61412 * 25.42505 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0135 6 6 5.1880 1.7951 -1.4367 7 1 4.6185 1.3781 -2.2541 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1052 -0.7002 10 14 6.7734 2.9614 -3.4598 11 1 5.8387 2.2749 -4.3874 12 1 6.7195 4.4264 -3.6964 13 1 8.1550 2.4719 -3.6982 14 6 3.6142 -0.7154 -0.0035 15 6 4.8350 -1.5990 -0.0086 16 6 2.3272 -1.1330 0.0046 17 6 1.8599 -2.5658 0.0105 18 6 1.7097 -3.0472 1.4549 19 6 1.2418 -4.4798 1.4609 20 8 1.0481 -5.0588 0.4130 21 7 1.0387 -5.1175 2.6308 22 6 0.5845 -6.5102 2.6365 23 6 0.4329 -6.9913 4.0810 24 8 -0.4037 -6.1385 4.8650 25 6 1.7694 -7.3380 4.7582 26 6 1.0472 -8.5394 5.3907 27 6 0.0762 -8.4824 4.1995 28 1 -0.3633 0.0037 1.0277 29 1 -0.3633 0.8881 -0.5170 30 1 -0.3633 -0.8918 -0.5106 31 1 4.5588 2.4342 0.4997 32 1 5.6118 0.9990 0.4974 33 1 7.7408 3.6690 -0.8822 34 1 5.1239 -1.8136 -1.0374 35 1 5.6539 -1.0903 0.5002 36 1 4.6102 -2.5322 0.5079 37 1 2.5905 -3.1884 -0.5059 38 1 0.8983 -2.6365 -0.4979 39 1 0.9791 -2.4246 1.9714 40 1 2.6712 -2.9765 1.9633 41 1 1.1975 -4.6557 3.4689 42 1 -0.3769 -6.5810 2.1276 43 1 1.3153 -7.1330 2.1206 44 1 -0.1694 -5.2017 4.8129 45 1 2.5541 -7.6204 4.0563 46 1 2.0971 -6.5939 5.4841 47 1 0.5778 -8.3123 6.3479 48 1 1.6509 -9.4464 5.4187 49 1 -0.9631 -8.6622 4.4745 50 1 0.3980 -9.0776 3.3450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304269197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:19 Heat of formation + Delta-G solvation = -15.449167 kcal Electronic energy + Delta-G solvation = -28531.891476 eV Core-core repulsion = 24560.600911 eV Total energy + Delta-G solvation = -3971.290566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.71281 -40.48623 -39.29173 -35.28791 -34.60372 -34.36366 -33.39417 -32.49962 -30.48189 -29.00948 -28.60515 -26.60899 -26.20895 -25.88554 -24.03357 -22.88934 -22.09270 -20.63283 -20.19643 -18.82284 -18.65447 -17.81103 -16.75950 -16.65496 -16.23484 -15.86785 -15.61804 -15.31974 -15.24280 -14.54322 -14.38723 -14.28476 -13.95659 -13.48178 -13.38161 -13.05900 -12.93587 -12.83571 -12.64162 -12.51008 -12.34221 -12.17922 -12.10544 -11.80869 -11.72069 -11.65544 -11.37151 -11.35565 -11.27596 -10.96496 -10.83578 -10.83085 -10.74013 -10.27741 -10.22955 -9.94667 -9.72257 -9.61680 -9.38486 -8.66778 -8.19504 -7.49055 -6.28198 -4.35302 2.54002 2.71917 2.87098 3.18754 3.26791 3.32510 3.38180 3.46414 3.60420 3.97272 4.15068 4.20608 4.28344 4.34559 4.70436 4.90453 5.05569 5.07610 5.17156 5.20360 5.23084 5.26014 5.32089 5.34682 5.40529 5.44486 5.53071 5.63641 5.68975 5.73608 5.80612 5.84667 5.93112 5.95601 6.00899 6.04513 6.07649 6.22868 6.35445 6.43645 6.53544 6.84016 7.01386 7.05044 7.10372 7.19787 7.50240 7.65108 7.86822 8.03906 8.06187 8.65588 8.74375 9.31249 10.79450 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.002005 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.214092 B =13962.816657 C =14437.243898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.270 4.270 17 C -0.011 4.011 18 C -0.133 4.133 19 C 0.515 3.485 20 O -0.536 6.536 21 N -0.738 5.738 22 C 0.102 3.898 23 C 0.094 3.906 24 O -0.536 6.536 25 C -0.165 4.165 26 C -0.135 4.135 27 C -0.123 4.123 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.267 0.733 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.396 0.604 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.377 0.623 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 -20.944 12.199 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.083 0.917 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.282 4.282 17 C -0.050 4.050 18 C -0.173 4.173 19 C 0.303 3.697 20 O -0.412 6.412 21 N -0.393 5.393 22 C -0.022 4.022 23 C 0.052 3.948 24 O -0.342 6.342 25 C -0.203 4.203 26 C -0.172 4.172 27 C -0.161 4.161 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.230 0.770 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.226 0.774 45 H 0.110 0.890 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.018 -20.404 11.617 25.936 hybrid contribution 0.842 0.335 -0.605 1.090 sum -10.176 -20.068 11.012 25.051 Atomic orbital electron populations 1.20026 0.88050 1.02446 1.01802 1.21946 0.96112 0.90768 1.02546 1.77275 0.87496 1.22671 1.24639 1.49246 1.05780 1.04198 1.51199 1.19657 0.77976 0.89545 0.98940 1.21345 1.12993 1.31610 0.91348 0.91746 1.24935 0.95719 0.95017 0.98179 1.69926 1.18954 1.33009 1.31104 0.86301 0.78383 0.78300 0.83720 1.19556 1.20619 1.20644 1.20777 0.96116 0.85690 1.01216 1.20349 0.93763 0.97110 1.03190 1.19339 0.91345 0.95064 1.22411 1.19386 1.01631 0.90920 0.93015 1.21760 1.03040 0.91019 1.01530 1.21088 0.76359 0.89302 0.82992 1.90707 1.50599 1.68410 1.31446 1.46010 1.70540 1.13648 1.09075 1.21913 1.01028 0.82973 0.96251 1.22549 0.91529 0.92008 0.88676 1.86536 1.57069 1.21015 1.69601 1.23645 0.96797 0.99267 1.00590 1.22756 0.97971 0.98383 0.98117 1.22992 1.01260 0.92400 0.99434 0.91608 0.91568 0.91236 0.93071 0.93107 0.92313 0.90442 0.90938 0.91130 0.91409 0.91254 0.88897 0.89002 0.76965 0.90716 0.90371 0.77441 0.89043 0.90718 0.89699 0.91094 0.90186 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 2 C 0.05 0.95 7.22 -82.40 -0.59 0.36 16 3 N -0.30 -6.77 12.58 33.67 0.42 -6.35 16 4 N -0.32 -7.51 3.60 -58.32 -0.21 -7.72 16 5 C 0.26 6.54 6.00 -5.20 -0.03 6.51 16 6 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 7 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 10 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 14 C 0.09 1.83 6.93 -82.26 -0.57 1.26 16 15 C -0.09 -1.38 9.72 36.01 0.35 -1.03 16 16 C -0.27 -4.72 5.35 -105.05 -0.56 -5.28 16 17 C -0.01 -0.15 4.41 -27.89 -0.12 -0.27 16 18 C -0.13 -1.42 5.68 -27.89 -0.16 -1.58 16 19 C 0.51 5.65 7.83 -10.98 -0.09 5.57 16 20 O -0.54 -8.04 15.98 5.56 0.09 -7.95 16 21 N -0.74 -5.56 5.33 -60.29 -0.32 -5.88 16 22 C 0.10 0.78 5.26 -4.04 -0.02 0.75 16 23 C 0.09 0.59 1.41 -89.80 -0.13 0.46 16 24 O -0.54 -3.75 13.41 -35.23 -0.47 -4.22 16 25 C -0.17 -0.91 7.47 -25.92 -0.19 -1.10 16 26 C -0.13 -0.74 8.02 -25.92 -0.21 -0.94 16 27 C -0.12 -0.71 7.47 -25.92 -0.19 -0.91 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.85 7.25 -51.93 -0.38 0.48 16 31 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.05 1.28 7.05 -51.93 -0.37 0.91 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.20 7.08 -51.93 -0.37 0.83 16 36 H 0.07 0.90 7.77 -51.93 -0.40 0.50 16 37 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 38 H 0.07 0.98 7.20 -51.93 -0.37 0.61 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.40 1.89 7.33 -40.82 -0.30 1.59 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 44 H 0.38 1.52 7.63 45.56 0.35 1.87 16 45 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.10 0.46 8.10 -51.93 -0.42 0.03 16 LS Contribution 411.83 15.07 6.21 6.21 Total: -1.00 -33.72 411.83 -8.83 -42.55 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.69 Total: 1.66 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -2.57 Total: -10.15 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.63 Total: -44.25 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.38 Total: -12.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.72 -8.83 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304269197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.098 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds