Wall clock time and date at job start Tue Mar 31 2020 20:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30838 * 125.90229 * 2 1 4 4 N 1.40079 * 108.20572 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03699 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46948 * 89.97068 * 5 4 3 7 7 H 1.07996 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99620 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00418 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99559 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46960 * 120.00650 * 10 8 6 13 13 H 1.48499 * 109.47277 * 240.00215 * 10 8 6 14 14 C 1.34952 * 107.92602 * 359.75706 * 4 3 2 15 15 C 1.50706 * 126.12450 * 180.24344 * 14 4 3 16 16 C 1.35309 * 107.74686 * 0.38973 * 14 4 3 17 17 C 1.50700 * 126.04135 * 179.87343 * 16 14 4 18 18 C 1.52998 * 109.47113 * 269.71497 * 17 16 14 19 19 C 1.50701 * 109.46886 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00388 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99740 * 180.02562 * 19 18 17 22 22 C 1.47421 * 125.64852 * 359.97120 * 21 19 18 23 23 C 1.54917 * 104.83002 * 155.91133 * 22 21 19 24 24 H 1.09004 * 111.00194 * 278.93638 * 23 22 21 25 25 O 1.42899 * 111.00384 * 155.09110 * 23 22 21 26 26 C 1.55151 * 101.58025 * 37.01304 * 23 22 21 27 27 C 1.47021 * 125.64696 * 180.02562 * 21 19 18 28 28 H 1.08996 * 109.88310 * 300.43775 * 27 21 19 29 29 C 1.53003 * 109.88477 * 61.60425 * 27 21 19 30 30 H 1.09000 * 109.46790 * 270.02407 * 1 2 3 31 31 H 1.08998 * 109.46883 * 30.02683 * 1 2 3 32 32 H 1.09001 * 109.46749 * 150.02490 * 1 2 3 33 33 H 1.08995 * 109.47487 * 209.97246 * 5 4 3 34 34 H 1.08998 * 109.47197 * 329.97452 * 5 4 3 35 35 H 0.97001 * 120.00168 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.46426 * 270.17342 * 15 14 4 37 37 H 1.08999 * 109.46999 * 30.17532 * 15 14 4 38 38 H 1.09003 * 109.46624 * 150.17368 * 15 14 4 39 39 H 1.08997 * 109.47217 * 149.71432 * 17 16 14 40 40 H 1.09002 * 109.47127 * 29.71750 * 17 16 14 41 41 H 1.09001 * 109.46766 * 60.00233 * 18 17 16 42 42 H 1.09002 * 109.47331 * 300.00128 * 18 17 16 43 43 H 1.09002 * 110.36865 * 37.07626 * 22 21 19 44 44 H 1.08994 * 110.46657 * 274.79775 * 22 21 19 45 45 H 0.96699 * 114.00294 * 61.44663 * 25 23 22 46 46 H 1.09000 * 110.72429 * 82.86540 * 26 23 22 47 47 H 1.09003 * 110.71831 * 206.13662 * 26 23 22 48 48 H 1.08997 * 109.47227 * 59.99861 * 29 27 21 49 49 H 1.08999 * 109.47221 * 180.02562 * 29 27 21 50 50 H 1.09000 * 109.46753 * 299.99888 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7900 1.5006 0.0003 6 6 5.1943 1.7993 1.4210 7 1 4.6282 1.3847 2.2420 8 6 6.2874 2.6010 1.6726 9 7 6.9770 3.1055 0.6729 10 14 6.7889 2.9707 3.4337 11 1 5.8575 2.2881 4.3673 12 1 8.1712 2.4809 3.6679 13 1 6.7372 4.4365 3.6658 14 6 3.6142 -0.7155 0.0064 15 6 4.8351 -1.5990 0.0142 16 6 2.3272 -1.1331 0.0006 17 6 1.8599 -2.5658 0.0013 18 6 1.7024 -3.0516 -1.4409 19 6 1.2358 -4.4845 -1.4402 20 8 1.0472 -5.0604 -0.3896 21 7 1.0279 -5.1261 -2.6071 22 6 1.2166 -4.5489 -3.9504 23 6 1.4637 -5.7675 -4.8745 24 1 2.5000 -6.1000 -4.8138 25 8 1.1022 -5.4685 -6.2243 26 6 0.5045 -6.8222 -4.2623 27 6 0.5745 -6.5172 -2.7511 28 1 1.2839 -7.1901 -2.2697 29 6 -0.8109 -6.6807 -2.1226 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 5.6097 0.9975 -0.5126 34 1 4.5568 2.4326 -0.5146 35 1 7.7458 3.6698 0.8499 36 1 5.1345 -1.8139 -1.0115 37 1 5.6485 -1.0901 0.5313 38 1 4.6049 -2.5321 0.5286 39 1 0.9009 -2.6350 0.5147 40 1 2.5931 -3.1869 0.5159 41 1 2.6615 -2.9825 -1.9543 42 1 0.9692 -2.4305 -1.9556 43 1 2.0806 -3.8844 -3.9599 44 1 0.3218 -4.0110 -4.2632 45 1 1.6108 -4.7458 -6.6168 46 1 -0.5098 -6.6845 -4.6370 47 1 0.8592 -7.8320 -4.4688 48 1 -1.5174 -6.0185 -2.6231 49 1 -1.1402 -7.7139 -2.2327 50 1 -0.7618 -6.4262 -1.0639 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330982219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:22 Heat of formation + Delta-G solvation = -31.698646 kcal Electronic energy + Delta-G solvation = -29175.535025 eV Core-core repulsion = 25203.539829 eV Total energy + Delta-G solvation = -3971.995196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.73381 -40.40492 -38.33179 -36.11123 -34.42526 -33.46660 -32.49442 -32.19539 -30.40898 -30.10478 -28.96896 -26.81749 -26.24096 -25.89592 -24.18967 -22.73077 -22.10329 -21.19399 -19.20660 -18.82043 -18.65411 -17.87538 -17.29198 -16.73219 -16.40708 -15.72250 -15.37754 -14.96120 -14.59105 -14.46018 -14.30149 -14.00018 -13.83854 -13.55624 -13.22735 -13.03552 -12.92761 -12.84072 -12.60138 -12.55077 -12.29200 -12.17684 -12.16187 -11.92323 -11.85793 -11.63755 -11.40737 -11.33956 -11.23250 -11.18861 -10.93822 -10.84031 -10.74071 -10.61371 -10.27661 -9.85074 -9.71907 -9.60880 -8.93274 -8.67304 -8.19225 -7.49217 -6.28516 -4.35907 2.55209 2.60222 2.77443 3.18542 3.26653 3.32445 3.36183 3.59844 3.65039 3.99566 4.12978 4.28090 4.51313 4.65031 4.73478 4.83397 5.03579 5.05171 5.11685 5.17432 5.24379 5.29965 5.33053 5.34904 5.37987 5.39501 5.54392 5.67204 5.68783 5.78063 5.84058 5.93545 5.95258 5.95720 5.99413 6.03145 6.14437 6.23156 6.36029 6.47100 6.53009 6.86993 7.00062 7.09258 7.09850 7.27058 7.50221 7.64810 7.86434 8.04131 8.06576 8.65489 8.74296 9.30903 10.79036 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002324 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.227657 B =12047.307934 C =12379.568940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.905 3.095 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.094 3.906 15 C -0.091 4.091 16 C -0.269 4.269 17 C -0.011 4.011 18 C -0.128 4.128 19 C 0.531 3.469 20 O -0.533 6.533 21 N -0.619 5.619 22 C 0.068 3.932 23 C 0.090 3.910 24 H 0.076 0.924 25 O -0.556 6.556 26 C -0.121 4.121 27 C 0.135 3.865 28 H 0.078 0.922 29 C -0.163 4.163 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.267 0.733 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.384 0.616 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.024 -18.853 -12.346 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 N -0.120 5.120 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.732 3.268 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.037 4.037 15 C -0.149 4.149 16 C -0.281 4.281 17 C -0.050 4.050 18 C -0.168 4.168 19 C 0.321 3.679 20 O -0.409 6.409 21 N -0.356 5.356 22 C -0.056 4.056 23 C 0.030 3.970 24 H 0.094 0.906 25 O -0.362 6.362 26 C -0.159 4.159 27 C 0.032 3.968 28 H 0.096 0.904 29 C -0.221 4.221 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.232 0.768 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.192 -18.072 -11.643 24.237 hybrid contribution 0.885 0.089 0.721 1.145 sum -10.306 -17.983 -10.922 23.429 Atomic orbital electron populations 1.20018 0.88060 1.02024 1.02147 1.21953 0.96105 0.90763 1.02570 1.77266 0.87536 1.22662 1.24584 1.49253 1.05751 1.04189 1.51300 1.19654 0.77944 0.89578 0.98923 1.21357 1.12956 1.31692 0.91392 0.91737 1.24930 0.95725 0.95004 0.98139 1.69923 1.19021 1.33053 1.30982 0.86309 0.78405 0.78324 0.83721 1.19546 1.20630 1.20606 1.20764 0.96101 0.85668 1.01215 1.20401 0.94444 0.97834 1.02261 1.19347 0.91392 0.95038 1.22294 1.19402 1.01634 0.90896 0.93019 1.21747 1.02806 0.90901 1.01378 1.20774 0.76431 0.88975 0.81681 1.90691 1.51396 1.68486 1.30334 1.48540 1.68144 1.13319 1.05601 1.23040 1.02560 0.97029 0.82948 1.22952 0.98354 0.94209 0.81498 0.90574 1.86522 1.65613 1.58025 1.26002 1.22755 1.01104 0.99085 0.92959 1.21540 0.96829 0.83503 0.94960 0.90364 1.22137 0.95397 1.01843 1.02697 0.91370 0.91631 0.91502 0.93113 0.93065 0.92301 0.91343 0.89958 0.90683 0.91277 0.91361 0.89185 0.89113 0.89943 0.90382 0.76814 0.89363 0.89484 0.92456 0.91698 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.12 36.01 0.36 -0.55 16 2 C 0.05 0.96 7.22 -82.40 -0.59 0.36 16 3 N -0.30 -6.80 12.58 33.67 0.42 -6.38 16 4 N -0.33 -7.55 3.60 -58.31 -0.21 -7.76 16 5 C 0.26 6.55 5.82 -5.19 -0.03 6.52 16 6 C -0.54 -14.76 9.39 -34.44 -0.32 -15.09 16 7 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 10 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 15 C -0.09 -1.48 9.68 36.01 0.35 -1.13 16 16 C -0.27 -4.77 5.35 -105.05 -0.56 -5.33 16 17 C -0.01 -0.15 4.45 -27.88 -0.12 -0.28 16 18 C -0.13 -1.49 4.69 -27.88 -0.13 -1.62 16 19 C 0.53 6.46 7.64 -10.98 -0.08 6.37 16 20 O -0.53 -8.25 15.00 5.56 0.08 -8.17 16 21 N -0.62 -5.85 3.07 -163.02 -0.50 -6.35 16 22 C 0.07 0.46 6.42 -2.53 -0.02 0.45 16 23 C 0.09 0.54 4.43 -24.58 -0.11 0.43 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 O -0.56 -3.42 13.47 -35.23 -0.47 -3.90 16 26 C -0.12 -0.77 6.21 -24.90 -0.15 -0.93 16 27 C 0.13 1.12 3.46 -66.95 -0.23 0.89 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 C -0.16 -1.38 9.13 37.16 0.34 -1.05 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 33 H 0.05 1.28 7.67 -51.93 -0.40 0.88 16 34 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 38 H 0.07 1.06 7.14 -51.93 -0.37 0.69 16 39 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 40 H 0.07 1.02 7.09 -51.93 -0.37 0.65 16 41 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 0.48 7.48 -51.93 -0.39 0.10 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.38 0.85 9.11 45.56 0.42 1.27 16 46 H 0.09 0.59 7.84 -51.93 -0.41 0.18 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.81 6.84 -51.93 -0.36 0.46 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -33.60 408.47 -8.48 -42.08 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.70 Total: 0.43 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.98 Total: -7.97 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.45 Total: -44.77 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.39 Total: -12.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.60 -8.48 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330982219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.384 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds