Wall clock time and date at job start Tue Mar 31 2020 20:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30838 * 125.90229 * 2 1 4 4 N 1.40079 * 108.20572 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03699 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46948 * 89.97068 * 5 4 3 7 7 H 1.07996 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99620 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00418 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99559 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46960 * 120.00650 * 10 8 6 13 13 H 1.48499 * 109.47277 * 240.00215 * 10 8 6 14 14 C 1.34952 * 107.92602 * 359.75706 * 4 3 2 15 15 C 1.50706 * 126.12450 * 180.24344 * 14 4 3 16 16 C 1.35309 * 107.74686 * 0.38973 * 14 4 3 17 17 C 1.50700 * 126.04135 * 179.87343 * 16 14 4 18 18 C 1.52998 * 109.47113 * 269.71497 * 17 16 14 19 19 C 1.50701 * 109.46886 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00388 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99740 * 180.02562 * 19 18 17 22 22 C 1.47421 * 125.64852 * 359.97120 * 21 19 18 23 23 C 1.54917 * 104.83002 * 155.91133 * 22 21 19 24 24 H 1.09004 * 111.00194 * 278.93638 * 23 22 21 25 25 O 1.42899 * 111.00384 * 155.09110 * 23 22 21 26 26 C 1.55151 * 101.58025 * 37.01304 * 23 22 21 27 27 C 1.47021 * 125.64696 * 180.02562 * 21 19 18 28 28 H 1.08996 * 109.88310 * 300.43775 * 27 21 19 29 29 C 1.53003 * 109.88477 * 61.60425 * 27 21 19 30 30 H 1.09000 * 109.46790 * 270.02407 * 1 2 3 31 31 H 1.08998 * 109.46883 * 30.02683 * 1 2 3 32 32 H 1.09001 * 109.46749 * 150.02490 * 1 2 3 33 33 H 1.08995 * 109.47487 * 209.97246 * 5 4 3 34 34 H 1.08998 * 109.47197 * 329.97452 * 5 4 3 35 35 H 0.97001 * 120.00168 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.46426 * 270.17342 * 15 14 4 37 37 H 1.08999 * 109.46999 * 30.17532 * 15 14 4 38 38 H 1.09003 * 109.46624 * 150.17368 * 15 14 4 39 39 H 1.08997 * 109.47217 * 149.71432 * 17 16 14 40 40 H 1.09002 * 109.47127 * 29.71750 * 17 16 14 41 41 H 1.09001 * 109.46766 * 60.00233 * 18 17 16 42 42 H 1.09002 * 109.47331 * 300.00128 * 18 17 16 43 43 H 1.09002 * 110.36865 * 37.07626 * 22 21 19 44 44 H 1.08994 * 110.46657 * 274.79775 * 22 21 19 45 45 H 0.96699 * 114.00294 * 61.44663 * 25 23 22 46 46 H 1.09000 * 110.72429 * 82.86540 * 26 23 22 47 47 H 1.09003 * 110.71831 * 206.13662 * 26 23 22 48 48 H 1.08997 * 109.47227 * 59.99861 * 29 27 21 49 49 H 1.08999 * 109.47221 * 180.02562 * 29 27 21 50 50 H 1.09000 * 109.46753 * 299.99888 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7900 1.5006 0.0003 6 6 5.1943 1.7993 1.4210 7 1 4.6282 1.3847 2.2420 8 6 6.2874 2.6010 1.6726 9 7 6.9770 3.1055 0.6729 10 14 6.7889 2.9707 3.4337 11 1 5.8575 2.2881 4.3673 12 1 8.1712 2.4809 3.6679 13 1 6.7372 4.4365 3.6658 14 6 3.6142 -0.7155 0.0064 15 6 4.8351 -1.5990 0.0142 16 6 2.3272 -1.1331 0.0006 17 6 1.8599 -2.5658 0.0013 18 6 1.7024 -3.0516 -1.4409 19 6 1.2358 -4.4845 -1.4402 20 8 1.0472 -5.0604 -0.3896 21 7 1.0279 -5.1261 -2.6071 22 6 1.2166 -4.5489 -3.9504 23 6 1.4637 -5.7675 -4.8745 24 1 2.5000 -6.1000 -4.8138 25 8 1.1022 -5.4685 -6.2243 26 6 0.5045 -6.8222 -4.2623 27 6 0.5745 -6.5172 -2.7511 28 1 1.2839 -7.1901 -2.2697 29 6 -0.8109 -6.6807 -2.1226 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 5.6097 0.9975 -0.5126 34 1 4.5568 2.4326 -0.5146 35 1 7.7458 3.6698 0.8499 36 1 5.1345 -1.8139 -1.0115 37 1 5.6485 -1.0901 0.5313 38 1 4.6049 -2.5321 0.5286 39 1 0.9009 -2.6350 0.5147 40 1 2.5931 -3.1869 0.5159 41 1 2.6615 -2.9825 -1.9543 42 1 0.9692 -2.4305 -1.9556 43 1 2.0806 -3.8844 -3.9599 44 1 0.3218 -4.0110 -4.2632 45 1 1.6108 -4.7458 -6.6168 46 1 -0.5098 -6.6845 -4.6370 47 1 0.8592 -7.8320 -4.4688 48 1 -1.5174 -6.0185 -2.6231 49 1 -1.1402 -7.7139 -2.2327 50 1 -0.7618 -6.4262 -1.0639 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330982219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:21 Heat of formation + Delta-G solvation = -54.301922 kcal Electronic energy + Delta-G solvation = -29176.515177 eV Core-core repulsion = 25203.539829 eV Total energy + Delta-G solvation = -3972.975348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.16938 -41.26792 -39.07552 -36.68951 -36.09541 -34.90608 -34.19750 -33.04748 -31.51129 -30.97310 -30.47028 -28.11363 -27.62697 -26.85929 -25.53110 -24.14058 -23.06669 -21.87038 -20.33335 -20.16112 -19.94767 -18.83311 -18.38994 -18.09618 -17.27318 -17.13365 -16.50197 -16.26539 -15.95552 -15.58695 -15.16406 -14.97135 -14.79233 -14.52647 -14.40494 -14.19155 -14.16308 -14.03259 -13.79478 -13.54174 -13.47067 -13.32457 -13.24449 -13.19686 -12.88996 -12.86359 -12.75419 -12.63764 -12.57214 -12.49039 -12.24302 -12.04697 -11.87286 -11.71764 -11.67323 -11.16580 -11.08594 -10.76460 -10.73180 -9.84141 -9.68802 -9.03952 -8.36148 -6.53773 1.16788 1.33592 1.35845 1.48186 1.64824 1.79775 1.93783 2.04811 2.32137 2.93266 3.16254 3.44360 3.62223 3.79076 3.90266 3.95084 4.02503 4.14915 4.21223 4.24618 4.31778 4.32953 4.40154 4.58239 4.60453 4.68380 4.70729 4.72559 4.74099 4.78440 4.81923 4.84795 4.86271 4.92510 4.95235 5.00037 5.04053 5.13592 5.16525 5.27522 5.30980 5.42327 5.45158 5.49479 5.55800 5.79393 6.04143 6.31314 6.47671 6.61887 6.86487 7.10886 7.17818 7.18078 8.70000 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002324 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.227657 B =12047.307934 C =12379.568940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 N -0.349 5.349 4 N -0.355 5.355 5 C 0.276 3.724 6 C -0.553 4.553 7 H 0.046 0.954 8 C 0.023 3.977 9 N -0.917 5.917 10 Si 0.970 3.030 11 H -0.275 1.275 12 H -0.265 1.265 13 H -0.274 1.274 14 C 0.080 3.920 15 C -0.087 4.087 16 C -0.258 4.258 17 C -0.003 4.003 18 C -0.119 4.119 19 C 0.531 3.469 20 O -0.574 6.574 21 N -0.616 5.616 22 C 0.065 3.935 23 C 0.096 3.904 24 H 0.086 0.914 25 O -0.569 6.569 26 C -0.116 4.116 27 C 0.130 3.870 28 H 0.072 0.928 29 C -0.158 4.158 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.020 0.980 35 H 0.274 0.726 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.400 0.600 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 -20.500 -13.215 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.173 5.173 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.064 0.936 8 C -0.178 4.178 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.200 1.200 12 H -0.190 1.190 13 H -0.199 1.199 14 C -0.050 4.050 15 C -0.145 4.145 16 C -0.270 4.270 17 C -0.042 4.042 18 C -0.159 4.159 19 C 0.322 3.678 20 O -0.453 6.453 21 N -0.351 5.351 22 C -0.058 4.058 23 C 0.036 3.964 24 H 0.103 0.897 25 O -0.377 6.377 26 C -0.154 4.154 27 C 0.027 3.973 28 H 0.090 0.910 29 C -0.216 4.216 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.251 0.749 46 H 0.105 0.895 47 H 0.119 0.881 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.689 -19.731 -12.569 26.152 hybrid contribution 0.941 0.535 0.914 1.417 sum -10.747 -19.196 -11.655 24.896 Atomic orbital electron populations 1.20196 0.84791 1.03779 1.03297 1.22775 0.98080 0.90218 1.00021 1.77202 0.87865 1.24984 1.27261 1.49011 1.05296 1.05144 1.54099 1.19126 0.78983 0.88786 0.97463 1.21460 1.13369 1.32403 0.91865 0.93611 1.25726 0.95441 0.94466 1.02204 1.69998 1.19392 1.33293 1.32894 0.85328 0.78424 0.78247 0.78607 1.20006 1.19021 1.19890 1.21446 0.98158 0.84678 1.00697 1.20482 0.92362 0.97735 1.03903 1.19691 0.90425 0.96394 1.20443 1.19354 1.01279 0.88471 0.95095 1.21611 1.03944 0.90847 0.99464 1.20749 0.76223 0.89031 0.81841 1.90680 1.53421 1.69313 1.31899 1.48545 1.66808 1.13830 1.05939 1.23228 1.03340 0.97667 0.81571 1.22886 0.98626 0.93471 0.81378 0.89655 1.86489 1.66353 1.59016 1.25833 1.22721 1.01341 1.00097 0.91200 1.21657 0.96399 0.82796 0.96444 0.90963 1.22081 0.95734 1.02983 1.00789 0.90397 0.91037 0.88594 0.93443 0.96229 0.91703 0.88788 0.92266 0.88369 0.91278 0.91734 0.87907 0.87787 0.88648 0.89996 0.74875 0.89484 0.88076 0.92347 0.89933 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.12 71.24 0.72 -0.94 16 2 C 0.05 2.01 7.22 43.11 0.31 2.32 16 3 N -0.35 -16.39 12.58 -47.37 -0.60 -16.99 16 4 N -0.36 -17.00 3.60 -338.39 -1.22 -18.22 16 5 C 0.28 14.72 5.82 85.63 0.50 15.22 16 6 C -0.55 -31.52 9.39 25.60 0.24 -31.28 16 7 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 8 C 0.02 1.25 5.46 84.66 0.46 1.72 16 9 N -0.92 -52.22 13.29 21.45 0.28 -51.93 16 10 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 C 0.08 3.14 6.93 41.40 0.29 3.43 16 15 C -0.09 -2.76 9.68 71.24 0.69 -2.07 16 16 C -0.26 -8.91 5.35 -20.14 -0.11 -9.01 16 17 C 0.00 -0.08 4.45 29.85 0.13 0.05 16 18 C -0.12 -2.47 4.69 29.85 0.14 -2.33 16 19 C 0.53 12.02 7.64 87.66 0.67 12.69 16 20 O -0.57 -17.35 15.00 -3.03 -0.05 -17.40 16 21 N -0.62 -10.42 3.07 -788.05 -2.42 -12.83 16 22 C 0.06 0.70 6.42 86.86 0.56 1.26 16 23 C 0.10 0.89 4.43 31.99 0.14 1.03 16 24 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 25 O -0.57 -5.38 13.47 -148.98 -2.01 -7.39 16 26 C -0.12 -1.19 6.21 31.78 0.20 -0.99 16 27 C 0.13 1.95 3.46 45.34 0.16 2.11 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 C -0.16 -2.51 9.13 71.98 0.66 -1.86 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 1.99 7.92 -2.39 -0.02 1.97 16 33 H 0.05 2.50 7.67 -2.39 -0.02 2.48 16 34 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.06 2.16 7.74 -2.39 -0.02 2.14 16 38 H 0.10 2.62 7.14 -2.39 -0.02 2.61 16 39 H 0.07 1.90 7.88 -2.39 -0.02 1.88 16 40 H 0.06 1.82 7.09 -2.39 -0.02 1.80 16 41 H 0.10 1.90 7.85 -2.39 -0.02 1.88 16 42 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.10 0.81 7.48 -2.39 -0.02 0.79 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.40 0.64 9.11 -74.06 -0.67 -0.03 16 46 H 0.09 0.94 7.84 -2.39 -0.02 0.93 16 47 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 49 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.04 1.00 6.84 -2.39 -0.02 0.98 16 Total: -1.00 -75.06 408.47 2.04 -73.01 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.26 Total: 14.69 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 5.75 Total: -8.65 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -3.94 Total: -99.97 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -2.05 Total: -24.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -75.06 2.04 -73.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330982219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.709 kcal (2) G-P(sol) polarization free energy of solvation -75.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds