Wall clock time and date at job start Tue Mar 31 2020 20:17:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42891 * 114.00227 * 2 1
4 4 H 1.08997 * 110.92110 * 333.89759 * 3 2 1
5 5 C 1.55155 * 111.00714 * 97.80454 * 3 2 1
6 6 C 1.54327 * 102.94571 * 153.57481 * 5 3 2
7 7 N 1.47024 * 107.26774 * 337.80617 * 6 5 3
8 8 C 1.34780 * 125.64847 * 179.20685 * 7 6 5
9 9 O 1.21278 * 120.00386 * 179.69053 * 8 7 6
10 10 C 1.50707 * 119.99690 * 359.68630 * 8 7 6
11 11 C 1.53003 * 109.46952 * 179.97438 * 10 8 7
12 12 C 1.50697 * 109.46920 * 179.97438 * 11 10 8
13 13 C 1.39870 * 126.04218 * 269.69613 * 12 11 10
14 14 C 1.50702 * 125.89755 * 359.97438 * 13 12 11
15 15 N 1.30837 * 108.19947 * 179.82250 * 13 12 11
16 16 N 1.40081 * 108.20772 * 0.43425 * 15 13 12
17 17 C 1.46505 * 126.03780 * 179.74248 * 16 15 13
18 18 C 1.50701 * 109.47098 * 269.97831 * 17 16 15
19 19 H 1.07995 * 120.00230 * 359.97438 * 18 17 16
20 20 C 1.37877 * 119.99964 * 180.02562 * 18 17 16
21 21 N 1.31517 * 119.99777 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 120.00017 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.47039 * 89.99523 * 22 20 18
24 24 H 1.48503 * 109.47026 * 209.99608 * 22 20 18
25 25 H 1.48492 * 109.47024 * 329.99567 * 22 20 18
26 26 C 1.34946 * 107.92600 * 359.72324 * 16 15 13
27 27 C 1.50704 * 126.12750 * 179.97438 * 26 16 15
28 28 C 1.47426 * 108.70449 * 358.94057 * 7 6 5
29 29 H 1.08999 * 109.47201 * 60.00047 * 1 2 3
30 30 H 1.08994 * 109.47645 * 180.02562 * 1 2 3
31 31 H 1.09006 * 109.47228 * 300.00359 * 1 2 3
32 32 H 1.08999 * 110.71965 * 271.93447 * 5 3 2
33 33 H 1.09000 * 110.72417 * 35.03467 * 5 3 2
34 34 H 1.08995 * 109.88184 * 218.39040 * 6 5 3
35 35 H 1.09002 * 109.88385 * 97.22047 * 6 5 3
36 36 H 1.08997 * 109.47117 * 300.00376 * 10 8 7
37 37 H 1.09002 * 109.46743 * 60.00082 * 10 8 7
38 38 H 1.09000 * 109.47351 * 300.00645 * 11 10 8
39 39 H 1.09000 * 109.46511 * 60.00276 * 11 10 8
40 40 H 1.08997 * 109.46902 * 90.00549 * 14 13 12
41 41 H 1.08998 * 109.46581 * 210.00405 * 14 13 12
42 42 H 1.08997 * 109.46904 * 330.00578 * 14 13 12
43 43 H 1.09001 * 109.47185 * 29.98119 * 17 16 15
44 44 H 1.08997 * 109.46956 * 149.97360 * 17 16 15
45 45 H 0.97004 * 119.99622 * 179.97438 * 21 20 18
46 46 H 1.08994 * 109.47259 * 270.02633 * 27 26 16
47 47 H 1.09002 * 109.47048 * 30.02369 * 27 26 16
48 48 H 1.09003 * 109.46656 * 150.02586 * 27 26 16
49 49 H 1.09002 * 110.36518 * 142.96440 * 28 7 6
50 50 H 1.08997 * 110.36787 * 265.28818 * 28 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3053 0.0000
4 1 1.3333 2.0328 -0.4479
5 6 2.4162 1.7335 1.4350
6 6 3.5640 2.7344 1.1855
7 7 4.1126 2.4459 -0.1477
8 6 5.1218 3.1121 -0.7428
9 8 5.4978 2.7824 -1.8477
10 6 5.7829 4.2670 -0.0354
11 6 6.8889 4.8426 -0.9222
12 6 7.5495 5.9978 -0.2150
13 6 7.1692 7.3411 -0.3004
14 6 6.0260 7.8856 -1.1175
15 7 7.9755 8.0428 0.4542
16 7 8.9019 7.1682 1.0366
17 6 9.9859 7.5429 1.9480
18 6 11.2271 7.8532 1.1516
19 1 11.2103 7.7783 0.0744
20 6 12.3845 8.2316 1.7984
21 7 12.4051 8.3222 3.1103
22 14 13.9232 8.6155 0.8113
23 1 13.9406 10.0590 0.4630
24 1 15.1248 8.2868 1.6197
25 1 13.9275 7.8059 -0.4335
26 6 8.6191 5.9195 0.6102
27 6 9.3618 4.6630 0.9853
28 6 3.3803 1.3031 -0.7231
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8900
32 1 1.5834 2.2204 1.9423
33 1 2.7669 0.8756 2.0088
34 1 4.3389 2.6056 1.9411
35 1 3.1798 3.7540 1.2156
36 1 5.0419 5.0397 0.1696
37 1 6.2143 3.9191 0.9032
38 1 7.6297 4.0697 -1.1269
39 1 6.4577 5.1903 -1.8609
40 1 5.1178 7.8887 -0.5147
41 1 6.2567 8.9033 -1.4321
42 1 5.8766 7.2585 -1.9964
43 1 9.6918 8.4229 2.5201
44 1 10.1888 6.7173 2.6302
45 1 13.2195 8.5881 3.5653
46 1 10.1694 4.4921 0.2736
47 1 9.7774 4.7720 1.9871
48 1 8.6757 3.8162 0.9667
49 1 3.2434 1.4415 -1.7956
50 1 3.9124 0.3728 -0.5246
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331100656.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:17:56
Heat of formation + Delta-G solvation = -42.919041 kcal
Electronic energy + Delta-G solvation = -28731.757542 eV
Core-core repulsion = 24759.275793 eV
Total energy + Delta-G solvation = -3972.481749 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.15685 -41.12858 -39.37569 -37.30481 -36.09363 -34.86993 -34.19071 -32.35249
-31.50716 -30.52060 -29.96647 -28.15562 -27.61365 -27.14582 -25.51939 -24.38385
-23.40722 -22.13137 -20.36690 -20.23616 -20.04687 -18.82178 -18.25168 -18.13125
-17.27385 -16.74398 -16.52058 -16.25101 -16.04397 -15.83549 -15.70379 -15.40900
-14.75510 -14.65609 -14.49066 -14.24401 -14.15496 -13.98359 -13.77370 -13.59524
-13.46854 -13.32712 -13.22545 -13.17077 -12.92957 -12.82104 -12.74581 -12.62139
-12.58303 -12.56296 -12.30891 -12.22805 -11.87745 -11.70774 -11.63891 -11.15942
-10.90655 -10.75628 -10.57257 -9.83210 -9.70449 -9.02622 -8.35228 -6.52739
1.17519 1.35182 1.36416 1.47565 1.61989 1.74973 1.95056 2.01664
2.32787 2.86846 2.94264 3.38628 3.59998 3.78922 3.90506 3.95763
3.97728 4.18421 4.23409 4.27443 4.34601 4.35720 4.50436 4.56055
4.57946 4.61439 4.65152 4.71643 4.72583 4.76885 4.79927 4.85977
4.87947 4.90724 4.91496 4.95905 4.99928 5.04212 5.11129 5.14552
5.24900 5.33036 5.44344 5.50290 5.56487 5.80220 6.06020 6.20750
6.31820 6.45166 6.62229 7.12155 7.13868 7.18559 8.70709
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.023348 B = 0.002051 C = 0.002017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1198.949942 B =13650.865960 C =13878.087403
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.398 6.398
3 C 0.080 3.920
4 H 0.093 0.907
5 C -0.145 4.145
6 C 0.095 3.905
7 N -0.621 5.621
8 C 0.531 3.469
9 O -0.581 6.581
10 C -0.117 4.117
11 C -0.004 4.004
12 C -0.257 4.257
13 C 0.055 3.945
14 C -0.063 4.063
15 N -0.349 5.349
16 N -0.354 5.354
17 C 0.275 3.725
18 C -0.553 4.553
19 H 0.046 0.954
20 C 0.022 3.978
21 N -0.917 5.917
22 Si 0.970 3.030
23 H -0.274 1.274
24 H -0.269 1.269
25 H -0.271 1.271
26 C 0.078 3.922
27 C -0.083 4.083
28 C 0.104 3.896
29 H 0.050 0.950
30 H 0.096 0.904
31 H 0.056 0.944
32 H 0.107 0.893
33 H 0.084 0.916
34 H 0.083 0.917
35 H 0.091 0.909
36 H 0.110 0.890
37 H 0.103 0.897
38 H 0.062 0.938
39 H 0.071 0.929
40 H 0.092 0.908
41 H 0.064 0.936
42 H 0.090 0.910
43 H 0.020 0.980
44 H 0.047 0.953
45 H 0.274 0.726
46 H 0.075 0.925
47 H 0.064 0.936
48 H 0.105 0.895
49 H 0.070 0.930
50 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.006 -15.463 -2.825 29.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.317 6.317
3 C 0.021 3.979
4 H 0.111 0.889
5 C -0.183 4.183
6 C -0.027 4.027
7 N -0.356 5.356
8 C 0.322 3.678
9 O -0.460 6.460
10 C -0.156 4.156
11 C -0.043 4.043
12 C -0.269 4.269
13 C -0.110 4.110
14 C -0.121 4.121
15 N -0.173 5.173
16 N -0.134 5.134
17 C 0.156 3.844
18 C -0.591 4.591
19 H 0.065 0.935
20 C -0.179 4.179
21 N -0.556 5.556
22 Si 0.794 3.206
23 H -0.200 1.200
24 H -0.194 1.194
25 H -0.195 1.195
26 C -0.051 4.051
27 C -0.141 4.141
28 C -0.019 4.019
29 H 0.069 0.931
30 H 0.115 0.885
31 H 0.075 0.925
32 H 0.126 0.874
33 H 0.103 0.897
34 H 0.101 0.899
35 H 0.109 0.891
36 H 0.129 0.871
37 H 0.121 0.879
38 H 0.080 0.920
39 H 0.090 0.910
40 H 0.111 0.889
41 H 0.083 0.917
42 H 0.109 0.891
43 H 0.038 0.962
44 H 0.065 0.935
45 H 0.083 0.917
46 H 0.093 0.907
47 H 0.082 0.918
48 H 0.123 0.877
49 H 0.089 0.911
50 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -24.110 -14.498 -2.716 28.264
hybrid contribution 0.908 -0.061 -0.404 0.995
sum -23.202 -14.559 -3.120 27.569
Atomic orbital electron populations
1.23015 0.78914 1.04016 1.01163 1.87863 1.21842 1.26962 1.94994
1.23202 0.93400 0.85450 0.95872 0.88949 1.23117 0.98551 0.99617
0.96982 1.22282 0.96671 1.00621 0.83123 1.48465 1.34646 1.32931
1.19533 1.20836 0.78290 0.83411 0.85259 1.90693 1.64216 1.69059
1.22076 1.21601 0.98874 0.95247 0.99920 1.19364 0.95670 0.92892
0.96418 1.19673 1.02456 0.95232 1.09529 1.22779 0.97939 0.92399
0.97871 1.20213 0.92781 1.00979 0.98149 1.77209 1.04670 1.19056
1.16334 1.48993 1.23850 1.04373 1.36232 1.19131 0.81683 0.96322
0.87296 1.21432 0.95856 1.48619 0.93216 0.93527 1.25734 1.01894
0.94173 0.96081 1.70001 1.29948 1.47041 1.08573 0.85372 0.78058
0.78658 0.78511 1.19994 1.19354 1.19533 1.21444 0.97337 0.88348
0.98003 1.20434 0.99872 0.91826 1.01943 1.22085 0.92053 0.89488
0.98304 0.93113 0.88544 0.92487 0.87424 0.89704 0.89891 0.89074
0.87145 0.87915 0.91958 0.91019 0.88933 0.91695 0.89108 0.96207
0.93476 0.91734 0.90660 0.91751 0.87665 0.91146 0.91489
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.18 10.85 113.37 1.23 1.41 16
2 O -0.40 -5.48 10.51 -148.98 -1.57 -7.04 16
3 C 0.08 0.93 3.54 31.99 0.11 1.05 16
4 H 0.09 0.85 7.83 -2.39 -0.02 0.83 16
5 C -0.14 -1.22 6.69 31.78 0.21 -1.01 16
6 C 0.09 1.02 6.49 86.73 0.56 1.58 16
7 N -0.62 -11.14 3.33 -811.77 -2.70 -13.84 16
8 C 0.53 12.50 7.85 87.66 0.69 13.19 16
9 O -0.58 -18.51 16.24 -3.02 -0.05 -18.56 16
10 C -0.12 -2.45 4.87 29.85 0.15 -2.30 16
11 C 0.00 -0.12 4.41 29.85 0.13 0.01 16
12 C -0.26 -8.91 5.35 -20.14 -0.11 -9.02 16
13 C 0.05 2.04 7.22 43.10 0.31 2.35 16
14 C -0.06 -1.64 10.26 71.24 0.73 -0.91 16
15 N -0.35 -16.32 12.58 -47.38 -0.60 -16.92 16
16 N -0.35 -17.01 3.60 -338.39 -1.22 -18.23 16
17 C 0.27 14.76 6.00 85.63 0.51 15.27 16
18 C -0.55 -31.65 9.39 25.60 0.24 -31.41 16
19 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16
20 C 0.02 1.23 5.46 84.65 0.46 1.70 16
21 N -0.92 -52.46 13.29 21.45 0.28 -52.18 16
22 Si 0.97 43.88 29.54 68.60 2.03 45.90 16
23 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16
24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
26 C 0.08 3.12 6.93 41.41 0.29 3.40 16
27 C -0.08 -2.70 9.72 71.24 0.69 -2.00 16
28 C 0.10 1.82 6.64 86.86 0.58 2.39 16
29 H 0.05 0.30 8.12 -2.39 -0.02 0.28 16
30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16
31 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16
32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16
33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16
35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16
36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16
37 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16
38 H 0.06 1.80 7.73 -2.39 -0.02 1.78 16
39 H 0.07 1.95 7.20 -2.39 -0.02 1.94 16
40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
42 H 0.09 1.99 7.25 -2.39 -0.02 1.97 16
43 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16
44 H 0.05 2.50 7.05 -2.39 -0.02 2.49 16
45 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16
46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16
47 H 0.06 2.19 7.08 -2.39 -0.02 2.17 16
48 H 0.10 2.63 7.77 -2.39 -0.02 2.61 16
49 H 0.07 1.40 8.04 -2.39 -0.02 1.39 16
50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
Total: -1.00 -74.93 412.10 3.88 -71.04
By element:
Atomic # 1 Polarization: 13.21 SS G_CDS: 0.91 Total: 14.12 kcal
Atomic # 6 Polarization: -11.10 SS G_CDS: 6.79 Total: -4.31 kcal
Atomic # 7 Polarization: -96.93 SS G_CDS: -4.23 Total: -101.16 kcal
Atomic # 8 Polarization: -23.98 SS G_CDS: -1.62 Total: -25.60 kcal
Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal
Total: -74.93 3.88 -71.04 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331100656.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.125 kcal
(2) G-P(sol) polarization free energy of solvation -74.929 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.804 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.044 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.919 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds