Wall clock time and date at job start Tue Mar 31 2020 20:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00227 * 2 1 4 4 H 1.08997 * 110.92110 * 333.89759 * 3 2 1 5 5 C 1.55155 * 111.00714 * 97.80454 * 3 2 1 6 6 C 1.54327 * 102.94571 * 153.57481 * 5 3 2 7 7 N 1.47024 * 107.26774 * 337.80617 * 6 5 3 8 8 C 1.34780 * 125.64847 * 179.20685 * 7 6 5 9 9 O 1.21278 * 120.00386 * 179.69053 * 8 7 6 10 10 C 1.50707 * 119.99690 * 359.68630 * 8 7 6 11 11 C 1.53003 * 109.46952 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46920 * 179.97438 * 11 10 8 13 13 C 1.39870 * 126.04218 * 269.69613 * 12 11 10 14 14 C 1.50702 * 125.89755 * 359.97438 * 13 12 11 15 15 N 1.30837 * 108.19947 * 179.82250 * 13 12 11 16 16 N 1.40081 * 108.20772 * 0.43425 * 15 13 12 17 17 C 1.46505 * 126.03780 * 179.74248 * 16 15 13 18 18 C 1.50701 * 109.47098 * 269.97831 * 17 16 15 19 19 H 1.07995 * 120.00230 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99964 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99777 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00017 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47039 * 89.99523 * 22 20 18 24 24 H 1.48503 * 109.47026 * 209.99608 * 22 20 18 25 25 H 1.48492 * 109.47024 * 329.99567 * 22 20 18 26 26 C 1.34946 * 107.92600 * 359.72324 * 16 15 13 27 27 C 1.50704 * 126.12750 * 179.97438 * 26 16 15 28 28 C 1.47426 * 108.70449 * 358.94057 * 7 6 5 29 29 H 1.08999 * 109.47201 * 60.00047 * 1 2 3 30 30 H 1.08994 * 109.47645 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47228 * 300.00359 * 1 2 3 32 32 H 1.08999 * 110.71965 * 271.93447 * 5 3 2 33 33 H 1.09000 * 110.72417 * 35.03467 * 5 3 2 34 34 H 1.08995 * 109.88184 * 218.39040 * 6 5 3 35 35 H 1.09002 * 109.88385 * 97.22047 * 6 5 3 36 36 H 1.08997 * 109.47117 * 300.00376 * 10 8 7 37 37 H 1.09002 * 109.46743 * 60.00082 * 10 8 7 38 38 H 1.09000 * 109.47351 * 300.00645 * 11 10 8 39 39 H 1.09000 * 109.46511 * 60.00276 * 11 10 8 40 40 H 1.08997 * 109.46902 * 90.00549 * 14 13 12 41 41 H 1.08998 * 109.46581 * 210.00405 * 14 13 12 42 42 H 1.08997 * 109.46904 * 330.00578 * 14 13 12 43 43 H 1.09001 * 109.47185 * 29.98119 * 17 16 15 44 44 H 1.08997 * 109.46956 * 149.97360 * 17 16 15 45 45 H 0.97004 * 119.99622 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.47259 * 270.02633 * 27 26 16 47 47 H 1.09002 * 109.47048 * 30.02369 * 27 26 16 48 48 H 1.09003 * 109.46656 * 150.02586 * 27 26 16 49 49 H 1.09002 * 110.36518 * 142.96440 * 28 7 6 50 50 H 1.08997 * 110.36787 * 265.28818 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3333 2.0328 -0.4479 5 6 2.4162 1.7335 1.4350 6 6 3.5640 2.7344 1.1855 7 7 4.1126 2.4459 -0.1477 8 6 5.1218 3.1121 -0.7428 9 8 5.4978 2.7824 -1.8477 10 6 5.7829 4.2670 -0.0354 11 6 6.8889 4.8426 -0.9222 12 6 7.5495 5.9978 -0.2150 13 6 7.1692 7.3411 -0.3004 14 6 6.0260 7.8856 -1.1175 15 7 7.9755 8.0428 0.4542 16 7 8.9019 7.1682 1.0366 17 6 9.9859 7.5429 1.9480 18 6 11.2271 7.8532 1.1516 19 1 11.2103 7.7783 0.0744 20 6 12.3845 8.2316 1.7984 21 7 12.4051 8.3222 3.1103 22 14 13.9232 8.6155 0.8113 23 1 13.9406 10.0590 0.4630 24 1 15.1248 8.2868 1.6197 25 1 13.9275 7.8059 -0.4335 26 6 8.6191 5.9195 0.6102 27 6 9.3618 4.6630 0.9853 28 6 3.3803 1.3031 -0.7231 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.5834 2.2204 1.9423 33 1 2.7669 0.8756 2.0088 34 1 4.3389 2.6056 1.9411 35 1 3.1798 3.7540 1.2156 36 1 5.0419 5.0397 0.1696 37 1 6.2143 3.9191 0.9032 38 1 7.6297 4.0697 -1.1269 39 1 6.4577 5.1903 -1.8609 40 1 5.1178 7.8887 -0.5147 41 1 6.2567 8.9033 -1.4321 42 1 5.8766 7.2585 -1.9964 43 1 9.6918 8.4229 2.5201 44 1 10.1888 6.7173 2.6302 45 1 13.2195 8.5881 3.5653 46 1 10.1694 4.4921 0.2736 47 1 9.7774 4.7720 1.9871 48 1 8.6757 3.8162 0.9667 49 1 3.2434 1.4415 -1.7956 50 1 3.9124 0.3728 -0.5246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331100656.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:56 Heat of formation + Delta-G solvation = -42.919041 kcal Electronic energy + Delta-G solvation = -28731.757542 eV Core-core repulsion = 24759.275793 eV Total energy + Delta-G solvation = -3972.481749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.15685 -41.12858 -39.37569 -37.30481 -36.09363 -34.86993 -34.19071 -32.35249 -31.50716 -30.52060 -29.96647 -28.15562 -27.61365 -27.14582 -25.51939 -24.38385 -23.40722 -22.13137 -20.36690 -20.23616 -20.04687 -18.82178 -18.25168 -18.13125 -17.27385 -16.74398 -16.52058 -16.25101 -16.04397 -15.83549 -15.70379 -15.40900 -14.75510 -14.65609 -14.49066 -14.24401 -14.15496 -13.98359 -13.77370 -13.59524 -13.46854 -13.32712 -13.22545 -13.17077 -12.92957 -12.82104 -12.74581 -12.62139 -12.58303 -12.56296 -12.30891 -12.22805 -11.87745 -11.70774 -11.63891 -11.15942 -10.90655 -10.75628 -10.57257 -9.83210 -9.70449 -9.02622 -8.35228 -6.52739 1.17519 1.35182 1.36416 1.47565 1.61989 1.74973 1.95056 2.01664 2.32787 2.86846 2.94264 3.38628 3.59998 3.78922 3.90506 3.95763 3.97728 4.18421 4.23409 4.27443 4.34601 4.35720 4.50436 4.56055 4.57946 4.61439 4.65152 4.71643 4.72583 4.76885 4.79927 4.85977 4.87947 4.90724 4.91496 4.95905 4.99928 5.04212 5.11129 5.14552 5.24900 5.33036 5.44344 5.50290 5.56487 5.80220 6.06020 6.20750 6.31820 6.45166 6.62229 7.12155 7.13868 7.18559 8.70709 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.002051 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.949942 B =13650.865960 C =13878.087403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.080 3.920 4 H 0.093 0.907 5 C -0.145 4.145 6 C 0.095 3.905 7 N -0.621 5.621 8 C 0.531 3.469 9 O -0.581 6.581 10 C -0.117 4.117 11 C -0.004 4.004 12 C -0.257 4.257 13 C 0.055 3.945 14 C -0.063 4.063 15 N -0.349 5.349 16 N -0.354 5.354 17 C 0.275 3.725 18 C -0.553 4.553 19 H 0.046 0.954 20 C 0.022 3.978 21 N -0.917 5.917 22 Si 0.970 3.030 23 H -0.274 1.274 24 H -0.269 1.269 25 H -0.271 1.271 26 C 0.078 3.922 27 C -0.083 4.083 28 C 0.104 3.896 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.020 0.980 44 H 0.047 0.953 45 H 0.274 0.726 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.105 0.895 49 H 0.070 0.930 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.006 -15.463 -2.825 29.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.021 3.979 4 H 0.111 0.889 5 C -0.183 4.183 6 C -0.027 4.027 7 N -0.356 5.356 8 C 0.322 3.678 9 O -0.460 6.460 10 C -0.156 4.156 11 C -0.043 4.043 12 C -0.269 4.269 13 C -0.110 4.110 14 C -0.121 4.121 15 N -0.173 5.173 16 N -0.134 5.134 17 C 0.156 3.844 18 C -0.591 4.591 19 H 0.065 0.935 20 C -0.179 4.179 21 N -0.556 5.556 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.051 4.051 27 C -0.141 4.141 28 C -0.019 4.019 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.038 0.962 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.123 0.877 49 H 0.089 0.911 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.110 -14.498 -2.716 28.264 hybrid contribution 0.908 -0.061 -0.404 0.995 sum -23.202 -14.559 -3.120 27.569 Atomic orbital electron populations 1.23015 0.78914 1.04016 1.01163 1.87863 1.21842 1.26962 1.94994 1.23202 0.93400 0.85450 0.95872 0.88949 1.23117 0.98551 0.99617 0.96982 1.22282 0.96671 1.00621 0.83123 1.48465 1.34646 1.32931 1.19533 1.20836 0.78290 0.83411 0.85259 1.90693 1.64216 1.69059 1.22076 1.21601 0.98874 0.95247 0.99920 1.19364 0.95670 0.92892 0.96418 1.19673 1.02456 0.95232 1.09529 1.22779 0.97939 0.92399 0.97871 1.20213 0.92781 1.00979 0.98149 1.77209 1.04670 1.19056 1.16334 1.48993 1.23850 1.04373 1.36232 1.19131 0.81683 0.96322 0.87296 1.21432 0.95856 1.48619 0.93216 0.93527 1.25734 1.01894 0.94173 0.96081 1.70001 1.29948 1.47041 1.08573 0.85372 0.78058 0.78658 0.78511 1.19994 1.19354 1.19533 1.21444 0.97337 0.88348 0.98003 1.20434 0.99872 0.91826 1.01943 1.22085 0.92053 0.89488 0.98304 0.93113 0.88544 0.92487 0.87424 0.89704 0.89891 0.89074 0.87145 0.87915 0.91958 0.91019 0.88933 0.91695 0.89108 0.96207 0.93476 0.91734 0.90660 0.91751 0.87665 0.91146 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.85 113.37 1.23 1.41 16 2 O -0.40 -5.48 10.51 -148.98 -1.57 -7.04 16 3 C 0.08 0.93 3.54 31.99 0.11 1.05 16 4 H 0.09 0.85 7.83 -2.39 -0.02 0.83 16 5 C -0.14 -1.22 6.69 31.78 0.21 -1.01 16 6 C 0.09 1.02 6.49 86.73 0.56 1.58 16 7 N -0.62 -11.14 3.33 -811.77 -2.70 -13.84 16 8 C 0.53 12.50 7.85 87.66 0.69 13.19 16 9 O -0.58 -18.51 16.24 -3.02 -0.05 -18.56 16 10 C -0.12 -2.45 4.87 29.85 0.15 -2.30 16 11 C 0.00 -0.12 4.41 29.85 0.13 0.01 16 12 C -0.26 -8.91 5.35 -20.14 -0.11 -9.02 16 13 C 0.05 2.04 7.22 43.10 0.31 2.35 16 14 C -0.06 -1.64 10.26 71.24 0.73 -0.91 16 15 N -0.35 -16.32 12.58 -47.38 -0.60 -16.92 16 16 N -0.35 -17.01 3.60 -338.39 -1.22 -18.23 16 17 C 0.27 14.76 6.00 85.63 0.51 15.27 16 18 C -0.55 -31.65 9.39 25.60 0.24 -31.41 16 19 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 20 C 0.02 1.23 5.46 84.65 0.46 1.70 16 21 N -0.92 -52.46 13.29 21.45 0.28 -52.18 16 22 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.08 3.12 6.93 41.41 0.29 3.40 16 27 C -0.08 -2.70 9.72 71.24 0.69 -2.00 16 28 C 0.10 1.82 6.64 86.86 0.58 2.39 16 29 H 0.05 0.30 8.12 -2.39 -0.02 0.28 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.80 7.73 -2.39 -0.02 1.78 16 39 H 0.07 1.95 7.20 -2.39 -0.02 1.94 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 1.99 7.25 -2.39 -0.02 1.97 16 43 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.05 2.50 7.05 -2.39 -0.02 2.49 16 45 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.06 2.19 7.08 -2.39 -0.02 2.17 16 48 H 0.10 2.63 7.77 -2.39 -0.02 2.61 16 49 H 0.07 1.40 8.04 -2.39 -0.02 1.39 16 50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -74.93 412.10 3.88 -71.04 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.91 Total: 14.12 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 6.79 Total: -4.31 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -4.23 Total: -101.16 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -1.62 Total: -25.60 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -74.93 3.88 -71.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331100656.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.125 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds