Wall clock time and date at job start Tue Mar 31 2020 20:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00007 * 2 1 4 4 C 1.52998 * 113.28358 * 313.07402 * 3 2 1 5 5 C 1.53494 * 114.21053 * 179.97438 * 3 2 1 6 6 N 1.47062 * 87.99223 * 220.35097 * 5 3 2 7 7 C 1.34780 * 136.05928 * 207.08997 * 6 5 3 8 8 O 1.21273 * 119.99822 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99639 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.46918 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47451 * 180.02562 * 10 9 7 12 12 C 1.39866 * 126.04287 * 89.96846 * 11 10 9 13 13 C 1.50705 * 125.89802 * 0.03191 * 12 11 10 14 14 N 1.30837 * 108.20458 * 180.02562 * 12 11 10 15 15 N 1.40086 * 108.20700 * 0.02562 * 14 12 11 16 16 C 1.46491 * 126.04129 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46957 * 90.02579 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 C 1.34955 * 107.92007 * 0.26426 * 15 14 12 26 26 C 1.50708 * 126.12162 * 179.73553 * 25 15 14 27 27 C 1.47072 * 87.88298 * 27.33969 * 6 5 3 28 28 H 1.08999 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46911 * 299.99397 * 1 2 3 30 30 H 1.08995 * 109.47700 * 59.99263 * 1 2 3 31 31 H 1.08999 * 109.46874 * 286.92826 * 4 3 2 32 32 H 1.09000 * 109.47340 * 46.93316 * 4 3 2 33 33 H 1.09005 * 109.46963 * 166.92909 * 4 3 2 34 34 H 1.09005 * 113.46685 * 105.56830 * 5 3 2 35 35 H 1.08999 * 113.46995 * 335.13586 * 5 3 2 36 36 H 1.08997 * 109.47366 * 60.00063 * 9 7 6 37 37 H 1.09000 * 109.47755 * 299.99776 * 9 7 6 38 38 H 1.09001 * 109.47356 * 60.00206 * 10 9 7 39 39 H 1.09002 * 109.47319 * 299.99905 * 10 9 7 40 40 H 1.08999 * 109.46544 * 269.99193 * 13 12 11 41 41 H 1.09000 * 109.47294 * 29.99156 * 13 12 11 42 42 H 1.09002 * 109.46965 * 149.99799 * 13 12 11 43 43 H 1.09004 * 109.47166 * 330.02845 * 16 15 14 44 44 H 1.08994 * 109.47507 * 210.02551 * 16 15 14 45 45 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.47042 * 90.02700 * 26 25 15 47 47 H 1.09007 * 109.46511 * 210.02061 * 26 25 15 48 48 H 1.08991 * 109.47237 * 330.02091 * 26 25 15 49 49 H 1.08999 * 113.46237 * 87.43938 * 27 6 5 50 50 H 1.08997 * 113.46950 * 217.87974 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3793 2.2484 -1.0266 5 6 3.5451 1.3111 0.0006 6 7 3.4891 2.4311 0.9520 7 6 4.2833 3.4713 1.2744 8 8 5.3406 3.6273 0.7014 9 6 3.8573 4.4403 2.3470 10 6 4.9303 5.5178 2.5161 11 6 4.5047 6.4866 3.5892 12 6 4.7880 6.3788 4.9546 13 6 5.5738 5.2721 5.6094 14 7 4.2530 7.4049 5.5652 15 7 3.6108 8.1989 4.6063 16 6 2.8840 9.4442 4.8651 17 6 3.8332 10.6103 4.7626 18 1 4.8736 10.4408 4.5277 19 6 3.3719 11.8943 4.9625 20 7 2.1049 12.1008 5.2480 21 14 4.5468 13.3402 4.8279 22 1 5.1315 13.3776 3.4633 23 1 3.8090 14.6031 5.0854 24 1 5.6338 13.1898 5.8283 25 6 3.7746 7.6106 3.4029 26 6 3.2434 8.1172 2.0866 27 6 2.1879 1.9132 1.4012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 1.7000 1.9619 -2.0282 32 1 0.2933 2.1835 -0.9603 33 1 1.6953 3.2715 -0.8226 34 1 3.9786 1.5809 -0.9625 35 1 3.9824 0.4057 0.4214 36 1 3.7275 3.9064 3.2883 37 1 2.9148 4.9074 2.0613 38 1 5.0605 6.0519 1.5749 39 1 5.8726 5.0505 2.8021 40 1 4.8962 4.4712 5.9051 41 1 6.3101 4.8838 4.9057 42 1 6.0835 5.6609 6.4910 43 1 2.4540 9.4127 5.8662 44 1 2.0869 9.5590 4.1307 45 1 1.7805 13.0040 5.3890 46 1 3.9814 8.7736 1.6255 47 1 3.0448 7.2731 1.4260 48 1 2.3201 8.6709 2.2564 49 1 2.2674 1.1664 2.1912 50 1 1.4652 2.6959 1.6314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331990127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:12 Heat of formation + Delta-G solvation = -2.207830 kcal Electronic energy + Delta-G solvation = -28948.705889 eV Core-core repulsion = 24977.989511 eV Total energy + Delta-G solvation = -3970.716378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.18628 -41.76869 -39.68250 -37.36696 -36.10193 -34.87145 -34.20298 -32.13736 -31.30428 -30.49750 -29.09982 -28.01116 -27.62481 -27.33317 -26.78292 -25.01921 -23.68163 -21.37398 -20.32700 -20.16324 -19.69764 -18.82346 -18.37609 -17.74374 -17.22160 -17.08389 -16.37562 -16.27339 -16.17002 -16.04969 -15.69226 -15.01615 -14.75058 -14.56950 -14.49013 -14.36580 -14.10374 -14.02145 -13.81398 -13.61514 -13.38913 -13.28599 -13.25180 -13.13123 -12.99938 -12.88498 -12.79120 -12.73796 -12.63065 -12.58944 -12.28332 -12.22543 -11.90206 -11.73430 -11.48433 -11.18370 -11.00537 -10.75701 -10.52916 -9.84879 -9.80260 -9.04321 -8.35598 -6.53131 1.16028 1.35547 1.37126 1.46066 1.56306 1.65102 1.93072 1.97425 2.32566 2.77076 2.93945 3.21837 3.41091 3.69301 3.85693 3.92945 4.00122 4.18107 4.18819 4.32051 4.40220 4.48203 4.49802 4.55000 4.56138 4.60081 4.63795 4.65709 4.68699 4.71536 4.80297 4.81977 4.82555 4.86111 4.88247 4.89604 4.94504 4.97802 5.03032 5.12757 5.19369 5.28467 5.42160 5.49265 5.55116 5.79678 6.03901 6.20466 6.30928 6.61344 6.63672 7.09326 7.10498 7.18036 8.70279 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.002252 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.339689 B =12428.074406 C =12945.995342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.381 6.381 3 C 0.081 3.919 4 C -0.156 4.156 5 C 0.109 3.891 6 N -0.647 5.647 7 C 0.549 3.451 8 O -0.578 6.578 9 C -0.115 4.115 10 C -0.004 4.004 11 C -0.258 4.258 12 C 0.055 3.945 13 C -0.063 4.063 14 N -0.349 5.349 15 N -0.355 5.355 16 C 0.276 3.724 17 C -0.554 4.554 18 H 0.046 0.954 19 C 0.022 3.978 20 N -0.918 5.918 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.276 1.276 25 C 0.080 3.920 26 C -0.083 4.083 27 C 0.079 3.921 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.019 0.981 44 H 0.048 0.952 45 H 0.274 0.726 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.103 0.897 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 -24.461 -12.202 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.299 6.299 3 C 0.041 3.959 4 C -0.213 4.213 5 C -0.014 4.014 6 N -0.383 5.383 7 C 0.341 3.659 8 O -0.458 6.458 9 C -0.155 4.155 10 C -0.043 4.043 11 C -0.270 4.270 12 C -0.110 4.110 13 C -0.122 4.122 14 N -0.173 5.173 15 N -0.135 5.135 16 C 0.156 3.844 17 C -0.592 4.592 18 H 0.065 0.935 19 C -0.179 4.179 20 N -0.556 5.556 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.202 1.202 25 C -0.050 4.050 26 C -0.141 4.141 27 C -0.043 4.043 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.124 0.876 48 H 0.083 0.917 49 H 0.121 0.879 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.468 -23.481 -11.237 26.412 hybrid contribution 0.368 0.986 -0.306 1.096 sum -4.100 -22.495 -11.543 25.614 Atomic orbital electron populations 1.23022 0.79237 1.04072 1.01397 1.87934 1.21762 1.25453 1.94782 1.23041 0.93141 0.84670 0.95092 1.21994 1.02300 0.98646 0.98380 1.23111 0.94536 0.89493 0.94245 1.49290 1.23029 1.25291 1.40732 1.20626 0.81937 0.80251 0.83094 1.90699 1.24540 1.75108 1.55427 1.21559 1.01149 0.95316 0.97437 1.19364 0.97165 0.92714 0.95039 1.19668 1.11863 1.00684 0.94759 1.22770 0.99096 0.95935 0.93213 1.20212 0.98518 0.93249 1.00184 1.77214 1.16914 1.06157 1.17031 1.49008 1.40623 1.19412 1.04451 1.19125 0.91086 0.77135 0.97019 1.21398 0.95382 0.91686 1.50721 0.93527 1.25737 0.97113 1.01342 0.93686 1.69992 1.15223 1.23315 1.47038 0.85431 0.78460 0.77685 0.79077 1.19008 1.19557 1.20182 1.21454 0.99751 0.94367 0.89427 1.20444 1.00973 1.02258 0.90397 1.23913 0.83690 0.98586 0.98150 0.88334 0.92796 0.92432 0.90787 0.89469 0.91382 0.90204 0.88507 0.87627 0.87863 0.91676 0.91090 0.89086 0.89121 0.91636 0.96276 0.93429 0.91706 0.90568 0.87587 0.91718 0.87875 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.36 113.37 1.17 1.30 16 2 O -0.38 -4.74 10.71 -148.98 -1.60 -6.33 16 3 C 0.08 0.97 1.56 -10.37 -0.02 0.95 16 4 C -0.16 -1.56 8.97 71.98 0.65 -0.91 16 5 C 0.11 1.70 8.04 83.18 0.67 2.37 16 6 N -0.65 -11.69 3.50 -858.21 -3.00 -14.69 16 7 C 0.55 13.04 8.08 87.65 0.71 13.75 16 8 O -0.58 -18.47 16.76 -3.01 -0.05 -18.52 16 9 C -0.11 -2.46 5.51 29.85 0.16 -2.30 16 10 C 0.00 -0.11 4.41 29.85 0.13 0.03 16 11 C -0.26 -8.98 5.35 -20.14 -0.11 -9.08 16 12 C 0.05 2.05 7.22 43.10 0.31 2.36 16 13 C -0.06 -1.69 10.26 71.24 0.73 -0.96 16 14 N -0.35 -16.45 12.58 -47.38 -0.60 -17.04 16 15 N -0.35 -17.05 3.60 -338.41 -1.22 -18.27 16 16 C 0.28 14.76 6.00 85.64 0.51 15.27 16 17 C -0.55 -31.61 9.39 25.60 0.24 -31.37 16 18 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 19 C 0.02 1.24 5.46 84.66 0.46 1.70 16 20 N -0.92 -52.36 13.29 21.45 0.28 -52.07 16 21 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C 0.08 3.16 6.93 41.41 0.29 3.45 16 26 C -0.08 -2.65 9.72 71.24 0.69 -1.96 16 27 C 0.08 0.94 7.82 83.26 0.65 1.59 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.06 0.29 6.36 -2.39 -0.02 0.28 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.59 6.12 -2.39 -0.01 0.57 16 33 H 0.07 0.82 7.94 -2.38 -0.02 0.80 16 34 H 0.08 1.33 8.12 -2.38 -0.02 1.31 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.86 7.75 -2.39 -0.02 1.84 16 39 H 0.07 1.96 7.21 -2.39 -0.02 1.94 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 2.05 7.25 -2.39 -0.02 2.03 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.05 2.52 7.04 -2.39 -0.02 2.50 16 45 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 46 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.11 2.57 7.79 -2.38 -0.02 2.55 16 48 H 0.06 2.16 7.07 -2.39 -0.02 2.14 16 49 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.10 0.90 8.13 -2.39 -0.02 0.88 16 Total: -1.00 -74.04 412.81 4.03 -70.01 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.92 Total: 15.02 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 7.26 Total: -3.82 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -4.53 Total: -102.06 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.65 Total: -24.86 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.04 4.03 -70.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331990127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.804 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds