Wall clock time and date at job start Tue Mar 31 2020 20:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47257 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.46940 * 210.00122 * 10 8 6 13 13 H 1.48499 * 109.47462 * 329.99632 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00042 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99865 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99741 * 179.97438 * 21 19 18 23 23 C 1.53000 * 109.46986 * 180.02562 * 22 21 19 24 24 H 1.08991 * 109.47114 * 60.00204 * 23 22 21 25 25 O 1.42901 * 109.47341 * 300.00159 * 23 22 21 26 26 C 1.52996 * 109.47213 * 180.02562 * 23 22 21 27 27 C 1.53004 * 117.49938 * 248.74811 * 26 23 22 28 28 C 1.53001 * 117.49963 * 180.08682 * 26 23 22 29 29 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 30 30 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 31 31 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 32 32 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 33 33 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 34 34 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 36 36 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 37 37 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 38 38 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 39 39 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 40 40 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 41 41 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 42 42 H 0.96998 * 119.99578 * 0.02562 * 21 19 18 43 43 H 1.09000 * 109.47710 * 300.00483 * 22 21 19 44 44 H 1.09000 * 109.46883 * 60.00527 * 22 21 19 45 45 H 0.96704 * 113.99924 * 300.00429 * 25 23 22 46 46 H 1.09006 * 115.55254 * 34.41518 * 26 23 22 47 47 H 1.09001 * 117.49730 * 359.97438 * 27 26 23 48 48 H 1.08996 * 117.50189 * 145.02018 * 27 26 23 49 49 H 1.09000 * 117.50081 * 214.97487 * 28 26 23 50 50 H 1.08993 * 117.49953 * 359.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1860 -3.9265 12 1 8.2419 3.1711 -3.5293 13 1 6.3958 1.8157 -4.3261 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0484 -5.0587 0.4137 21 7 1.0398 -5.1174 2.6316 22 6 0.5846 -6.5099 2.6375 23 6 0.4344 -6.9912 4.0820 24 1 -0.2957 -6.3681 4.5985 25 8 1.6952 -6.8994 4.7483 26 6 -0.0404 -8.4456 4.0882 27 6 -1.4593 -8.7234 4.5888 28 6 -0.2540 -9.1132 5.4482 29 1 -0.3634 0.0038 1.0276 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3633 -0.8919 -0.5105 32 1 4.5588 2.4344 0.4996 33 1 5.6118 0.9994 0.4977 34 1 7.7407 3.6692 -0.8822 35 1 5.1240 -1.8136 -1.0369 36 1 5.6539 -1.0899 0.5006 37 1 4.6103 -2.5319 0.5087 38 1 0.8985 -2.6365 -0.4975 39 1 2.5908 -3.1883 -0.5052 40 1 2.6712 -2.9761 1.9640 41 1 0.9790 -2.4243 1.9718 42 1 1.1950 -4.6543 3.4696 43 1 -0.3774 -6.5799 2.1296 44 1 1.3145 -7.1329 2.1206 45 1 2.3943 -7.4298 4.3420 46 1 0.3375 -9.0670 3.2763 47 1 -2.0544 -7.8700 4.9140 48 1 -2.0147 -9.5278 4.1065 49 1 -0.0171 -10.1739 5.5310 50 1 -0.0559 -8.5164 6.3385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337658180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:35 Heat of formation + Delta-G solvation = -17.055622 kcal Electronic energy + Delta-G solvation = -28154.760029 eV Core-core repulsion = 24183.399803 eV Total energy + Delta-G solvation = -3971.360227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.61456 -39.94135 -38.84608 -36.12016 -34.55970 -34.32153 -33.35430 -32.47458 -30.56806 -29.41175 -28.93353 -26.74164 -25.86220 -24.45145 -23.16050 -22.82796 -22.07997 -21.60331 -20.23268 -18.79031 -18.62114 -17.46042 -17.14445 -16.70172 -16.52626 -15.92804 -15.54397 -15.38428 -15.09622 -14.52499 -14.45391 -14.29817 -13.85908 -13.63686 -13.29495 -13.04026 -12.96469 -12.81581 -12.48914 -12.37497 -12.24390 -12.07669 -12.04616 -11.77797 -11.63437 -11.58481 -11.32411 -11.23831 -11.11997 -10.96345 -10.79303 -10.77427 -10.70113 -10.51712 -10.25432 -9.87703 -9.71946 -9.58494 -9.28303 -8.64322 -8.16537 -7.45749 -6.26016 -4.33238 2.61850 2.75695 2.91133 3.19534 3.21814 3.27947 3.32354 3.42207 3.63147 3.98920 3.99170 4.27655 4.30038 4.45197 4.55232 4.70290 4.83115 4.85990 5.07729 5.15011 5.21611 5.29081 5.33264 5.36125 5.37334 5.42445 5.46443 5.59573 5.66750 5.67457 5.79014 5.84307 5.95661 6.00028 6.04360 6.08105 6.19282 6.25730 6.38529 6.47930 6.56778 6.87398 7.04061 7.10869 7.13125 7.34969 7.53198 7.66931 7.89028 8.07067 8.15561 8.68007 8.76509 9.33160 10.81566 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.001869 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.984390 B =14978.144318 C =15433.354087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.050 3.950 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.093 3.907 15 C -0.086 4.086 16 C -0.269 4.269 17 C -0.010 4.010 18 C -0.133 4.133 19 C 0.513 3.487 20 O -0.542 6.542 21 N -0.733 5.733 22 C 0.091 3.909 23 C 0.127 3.873 24 H 0.105 0.895 25 O -0.555 6.555 26 C -0.195 4.195 27 C -0.172 4.172 28 C -0.164 4.164 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.405 0.595 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.379 0.621 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.044 -22.725 12.032 28.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.281 4.281 17 C -0.049 4.049 18 C -0.173 4.173 19 C 0.301 3.699 20 O -0.418 6.418 21 N -0.386 5.386 22 C -0.034 4.034 23 C 0.068 3.932 24 H 0.122 0.878 25 O -0.360 6.360 26 C -0.214 4.214 27 C -0.210 4.210 28 C -0.201 4.201 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.239 0.761 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.227 0.773 46 H 0.127 0.873 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.175 -21.212 11.702 27.577 hybrid contribution 0.769 -0.694 -0.930 1.393 sum -12.406 -21.906 10.772 27.383 Atomic orbital electron populations 1.20023 0.88070 1.02407 1.01792 1.21943 0.96110 0.90784 1.02586 1.77272 0.87499 1.22664 1.24677 1.49236 1.05766 1.04196 1.51221 1.19651 0.78000 0.89548 0.98907 1.21311 1.13033 1.31681 0.91345 0.91804 1.24926 0.95692 0.95020 0.98150 1.69917 1.18984 1.32938 1.31154 0.86354 0.77598 0.78983 0.83753 1.20308 1.20877 1.19670 1.20778 0.96126 0.85683 1.01219 1.20347 0.93757 0.97141 1.03156 1.19351 0.91347 0.95096 1.22315 1.19386 1.01561 0.90872 0.93097 1.21744 1.03077 0.91130 1.01355 1.21085 0.76440 0.89328 0.83067 1.90694 1.51050 1.68490 1.31598 1.45977 1.70008 1.13277 1.09347 1.21961 1.01082 0.83403 0.96907 1.21692 0.86462 0.93428 0.91646 0.87767 1.86596 1.20083 1.72246 1.57100 1.22962 1.01350 0.97595 0.99523 1.22994 0.90386 1.03773 1.03799 1.22880 1.01923 1.01084 0.94166 0.91619 0.91589 0.91250 0.93079 0.93090 0.92272 0.90468 0.90940 0.91097 0.91311 0.91443 0.89004 0.88987 0.76058 0.90585 0.91280 0.77338 0.87252 0.88462 0.88453 0.88634 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.26 36.01 0.37 -0.55 16 2 C 0.05 0.96 7.22 -82.40 -0.59 0.36 16 3 N -0.30 -6.88 12.58 33.67 0.42 -6.45 16 4 N -0.32 -7.62 3.60 -58.32 -0.21 -7.83 16 5 C 0.26 6.62 6.00 -5.20 -0.03 6.59 16 6 C -0.54 -14.89 9.39 -34.44 -0.32 -15.22 16 7 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 10 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.09 1.87 6.93 -82.26 -0.57 1.30 16 15 C -0.09 -1.42 9.72 36.00 0.35 -1.07 16 16 C -0.27 -4.84 5.35 -105.05 -0.56 -5.40 16 17 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 18 C -0.13 -1.53 5.68 -27.89 -0.16 -1.68 16 19 C 0.51 6.02 7.83 -10.98 -0.09 5.93 16 20 O -0.54 -8.37 15.98 5.56 0.09 -8.28 16 21 N -0.73 -6.24 5.45 -60.30 -0.33 -6.56 16 22 C 0.09 0.67 5.32 -4.04 -0.02 0.65 16 23 C 0.13 0.71 3.25 -26.73 -0.09 0.62 16 24 H 0.10 0.59 7.90 -51.93 -0.41 0.18 16 25 O -0.55 -3.48 12.99 -35.23 -0.46 -3.94 16 26 C -0.20 -0.97 5.36 -90.62 -0.49 -1.45 16 27 C -0.17 -0.80 10.18 -26.69 -0.27 -1.07 16 28 C -0.16 -0.79 10.16 -26.69 -0.27 -1.06 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.87 7.25 -51.93 -0.38 0.50 16 32 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 1.30 7.05 -51.93 -0.37 0.93 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.22 7.08 -51.93 -0.37 0.86 16 37 H 0.07 0.95 7.77 -51.93 -0.40 0.54 16 38 H 0.07 1.01 7.20 -51.93 -0.37 0.63 16 39 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.40 2.79 8.35 -40.82 -0.34 2.45 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.38 1.45 9.05 45.56 0.41 1.86 16 46 H 0.11 0.51 8.11 -51.93 -0.42 0.09 16 47 H 0.10 0.42 8.05 -51.93 -0.42 0.00 16 48 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 418.48 15.07 6.31 6.31 Total: -1.00 -33.57 418.48 -9.09 -42.66 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.66 Total: 2.91 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.96 Total: -10.62 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.62 Total: -45.32 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.37 Total: -12.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.57 -9.09 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337658180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.603 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds