Wall clock time and date at job start Tue Mar 31 2020 20:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.89882 * 2 1 4 4 N 1.40080 * 108.20344 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03696 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46967 * 90.02364 * 5 4 3 7 7 H 1.08000 * 120.00238 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00327 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00509 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99480 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47082 * 90.00170 * 10 8 6 12 12 H 1.48498 * 109.46846 * 210.00036 * 10 8 6 13 13 H 1.48492 * 109.47345 * 329.99827 * 10 8 6 14 14 C 1.34951 * 107.92649 * 359.75740 * 4 3 2 15 15 C 1.50700 * 126.12519 * 180.23853 * 14 4 3 16 16 C 1.35306 * 107.74429 * 0.39166 * 14 4 3 17 17 C 1.50706 * 126.04096 * 179.87280 * 16 14 4 18 18 C 1.52999 * 109.47090 * 269.71662 * 17 16 14 19 19 C 1.50696 * 109.47088 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00069 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99853 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99726 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.46965 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.47406 * 305.00294 * 23 22 21 25 25 O 1.42901 * 109.47166 * 65.00493 * 23 22 21 26 26 C 1.53004 * 109.47123 * 185.00258 * 23 22 21 27 27 C 1.53002 * 117.49845 * 248.74693 * 26 23 22 28 28 C 1.53003 * 117.49600 * 180.08861 * 26 23 22 29 29 H 1.09003 * 109.47113 * 269.97554 * 1 2 3 30 30 H 1.09000 * 109.47131 * 29.97372 * 1 2 3 31 31 H 1.09003 * 109.47348 * 149.97277 * 1 2 3 32 32 H 1.09000 * 109.47667 * 210.02168 * 5 4 3 33 33 H 1.09004 * 109.47353 * 330.02766 * 5 4 3 34 34 H 0.97008 * 120.00198 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46893 * 270.17807 * 15 14 4 36 36 H 1.08998 * 109.47339 * 30.17681 * 15 14 4 37 37 H 1.09001 * 109.47172 * 150.18283 * 15 14 4 38 38 H 1.08994 * 109.46790 * 29.71060 * 17 16 14 39 39 H 1.08997 * 109.47305 * 149.71501 * 17 16 14 40 40 H 1.09011 * 109.46854 * 299.99717 * 18 17 16 41 41 H 1.09005 * 109.47366 * 59.99142 * 18 17 16 42 42 H 0.96993 * 120.00067 * 0.02562 * 21 19 18 43 43 H 1.08998 * 109.47778 * 300.00034 * 22 21 19 44 44 H 1.09000 * 109.47437 * 60.00559 * 22 21 19 45 45 H 0.96694 * 113.99989 * 59.99618 * 25 23 22 46 46 H 1.08996 * 115.55196 * 34.41938 * 26 23 22 47 47 H 1.09001 * 117.49841 * 359.97438 * 27 26 23 48 48 H 1.09004 * 117.49925 * 145.02124 * 27 26 23 49 49 H 1.09004 * 117.49487 * 214.98001 * 28 26 23 50 50 H 1.08991 * 117.50109 * 359.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1955 1.7964 1.4207 7 1 4.6303 1.3801 2.2414 8 6 6.2883 2.5985 1.6730 9 7 6.6426 2.8561 2.9130 10 14 7.2655 3.3192 0.2534 11 1 6.6957 4.6386 -0.1204 12 1 8.6822 3.4903 0.6642 13 1 7.1955 2.4017 -0.9120 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5989 0.0109 16 6 2.3272 -1.1330 -0.0006 17 6 1.8598 -2.5658 -0.0004 18 6 1.7014 -3.0508 -1.4428 19 6 1.2335 -4.4833 -1.4426 20 8 1.0457 -5.0597 -0.3921 21 7 1.0237 -5.1238 -2.6097 22 6 0.5694 -6.5166 -2.6095 23 6 0.4108 -7.0015 -4.0519 24 1 -0.2548 -6.3273 -4.5908 25 8 1.6888 -7.0210 -4.6911 26 6 -0.1816 -8.4122 -4.0535 27 6 0.7238 -9.5582 -4.5094 28 6 -0.4166 -9.0782 -5.4108 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 5.6091 0.9987 -0.5149 33 1 4.5561 2.4338 -0.5130 34 1 7.4117 3.4201 3.0905 35 1 5.1337 -1.8132 -1.0153 36 1 5.6489 -1.0904 0.5276 37 1 4.6053 -2.5323 0.5248 38 1 2.5934 -3.1871 0.5132 39 1 0.9012 -2.6352 0.5136 40 1 0.9677 -2.4294 -1.9565 41 1 2.6601 -2.9812 -1.9569 42 1 1.1742 -4.6630 -3.4498 43 1 1.3031 -7.1381 -2.0962 44 1 -0.3891 -6.5861 -2.0951 45 1 2.3333 -7.6016 -4.2640 46 1 -0.8978 -8.6222 -3.2591 47 1 1.7414 -9.3071 -4.8087 48 1 0.6030 -10.5222 -4.0153 49 1 -1.2872 -9.7266 -5.5091 50 1 -0.1495 -8.5112 -6.3025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337658182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:40 Heat of formation + Delta-G solvation = -9.883108 kcal Electronic energy + Delta-G solvation = -28229.839478 eV Core-core repulsion = 24258.790275 eV Total energy + Delta-G solvation = -3971.049203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.70324 -40.03979 -39.05260 -35.80192 -34.61065 -34.38817 -33.36944 -32.48516 -30.75022 -29.69731 -29.18322 -26.85632 -26.09318 -24.56648 -23.24868 -22.80148 -21.84656 -21.31002 -20.20479 -18.86581 -18.67760 -17.60533 -17.23847 -17.11636 -16.46232 -16.24773 -15.67754 -15.36402 -15.19743 -14.65018 -14.33177 -14.11393 -13.83861 -13.71686 -13.22927 -13.12479 -12.96103 -12.86668 -12.66160 -12.46168 -12.25532 -12.16622 -12.03458 -12.01739 -11.86646 -11.79069 -11.51523 -11.28434 -11.10184 -10.96832 -10.80259 -10.74963 -10.73905 -10.46851 -10.22919 -9.90033 -9.68356 -9.65382 -9.30881 -8.79439 -8.23206 -7.51434 -6.27224 -4.30539 2.59194 2.67322 2.90159 3.14221 3.18944 3.19933 3.21620 3.35557 3.50144 3.81345 4.08309 4.20223 4.26462 4.37184 4.57979 4.69669 4.81419 4.83928 4.99990 5.13644 5.16526 5.23894 5.28809 5.31490 5.34618 5.38737 5.50891 5.56073 5.62159 5.62903 5.73530 5.82938 5.92603 5.93671 5.96869 6.00986 6.16593 6.21388 6.32666 6.36110 6.45685 6.50952 6.81321 6.94072 7.03829 7.28035 7.31693 7.42961 7.86179 8.12813 8.30540 8.59805 8.78393 9.27910 10.85237 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.001942 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.462270 B =14417.921830 C =15071.493146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.054 3.946 3 N -0.294 5.294 4 N -0.325 5.325 5 C 0.230 3.770 6 C -0.542 4.542 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.886 5.886 10 Si 0.874 3.126 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.097 3.903 15 C -0.093 4.093 16 C -0.265 4.265 17 C -0.011 4.011 18 C -0.133 4.133 19 C 0.513 3.487 20 O -0.541 6.541 21 N -0.733 5.733 22 C 0.091 3.909 23 C 0.126 3.874 24 H 0.110 0.890 25 O -0.556 6.556 26 C -0.193 4.193 27 C -0.177 4.177 28 C -0.167 4.167 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.269 0.731 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.404 0.596 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.378 0.622 46 H 0.114 0.886 47 H 0.100 0.900 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 -22.545 -17.002 30.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.118 5.118 4 N -0.104 5.104 5 C 0.111 3.889 6 C -0.580 4.580 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.523 5.523 10 Si 0.700 3.300 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.189 1.189 14 C -0.034 4.034 15 C -0.152 4.152 16 C -0.277 4.277 17 C -0.050 4.050 18 C -0.173 4.173 19 C 0.301 3.699 20 O -0.417 6.417 21 N -0.386 5.386 22 C -0.033 4.033 23 C 0.067 3.933 24 H 0.127 0.873 25 O -0.363 6.363 26 C -0.212 4.212 27 C -0.214 4.214 28 C -0.204 4.204 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.239 0.761 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.226 0.774 46 H 0.132 0.868 47 H 0.119 0.881 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.234 -21.032 -16.508 29.403 hybrid contribution 0.923 -0.509 -0.506 1.169 sum -11.311 -21.540 -17.014 29.688 Atomic orbital electron populations 1.20034 0.87882 1.02095 1.02298 1.21977 0.96189 0.90706 1.02202 1.77268 0.87206 1.22632 1.24650 1.48786 1.05402 1.04026 1.52234 1.19967 0.79474 0.89816 0.99661 1.21176 1.13949 1.32465 0.90383 0.90151 1.24817 0.96614 0.95312 0.95786 1.69875 1.26799 1.36946 1.18635 0.86887 0.79982 0.80468 0.82649 1.19628 1.20530 1.18930 1.20757 0.96264 0.85355 1.00991 1.20430 0.94422 0.98036 1.02261 1.19364 0.91311 0.95185 1.21837 1.19405 1.01714 0.90718 0.93175 1.21742 1.03059 0.91186 1.01313 1.21069 0.76461 0.89297 0.83120 1.90701 1.51074 1.68615 1.31315 1.45989 1.70063 1.13270 1.09317 1.21966 1.01099 0.83333 0.96910 1.21642 0.85282 0.94396 0.92004 0.87273 1.86602 1.22401 1.70188 1.57113 1.23021 1.04471 0.93840 0.99891 1.22988 0.96528 0.97942 1.03893 1.22933 1.00264 1.03301 0.93945 0.91226 0.91586 0.91373 0.93500 0.93719 0.92111 0.91262 0.89904 0.90428 0.91296 0.91197 0.89004 0.89003 0.76141 0.91167 0.90630 0.77350 0.86819 0.88137 0.88594 0.88732 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.12 36.01 0.36 -0.54 16 2 C 0.05 1.02 7.22 -82.40 -0.59 0.42 16 3 N -0.29 -6.66 12.58 33.67 0.42 -6.23 16 4 N -0.33 -7.42 3.60 -58.31 -0.21 -7.63 16 5 C 0.23 5.54 4.88 -5.19 -0.03 5.52 16 6 C -0.54 -15.25 9.94 -34.44 -0.34 -15.59 16 7 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 8 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 9 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 10 Si 0.87 20.23 27.47 -169.99 -4.67 15.56 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 14 C 0.10 1.90 6.93 -82.27 -0.57 1.33 16 15 C -0.09 -1.50 9.68 36.01 0.35 -1.15 16 16 C -0.27 -4.67 5.35 -105.05 -0.56 -5.23 16 17 C -0.01 -0.16 4.45 -27.88 -0.12 -0.28 16 18 C -0.13 -1.47 5.68 -27.89 -0.16 -1.63 16 19 C 0.51 5.85 7.83 -10.98 -0.09 5.77 16 20 O -0.54 -8.24 15.98 5.56 0.09 -8.15 16 21 N -0.73 -5.99 5.50 -60.30 -0.33 -6.33 16 22 C 0.09 0.65 5.29 -4.04 -0.02 0.62 16 23 C 0.13 0.67 3.36 -26.73 -0.09 0.58 16 24 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 25 O -0.56 -3.32 12.44 -35.23 -0.44 -3.76 16 26 C -0.19 -0.92 5.71 -90.61 -0.52 -1.44 16 27 C -0.18 -0.78 9.74 -26.69 -0.26 -1.04 16 28 C -0.17 -0.79 10.19 -26.69 -0.27 -1.07 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 32 H 0.05 1.05 6.74 -51.93 -0.35 0.70 16 33 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 37 H 0.08 1.09 7.14 -51.93 -0.37 0.72 16 38 H 0.07 1.02 7.10 -51.93 -0.37 0.65 16 39 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 40 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.40 2.59 8.47 -40.82 -0.35 2.24 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.38 1.44 7.56 45.56 0.34 1.78 16 46 H 0.11 0.51 8.11 -51.93 -0.42 0.09 16 47 H 0.10 0.39 6.37 -51.93 -0.33 0.06 16 48 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 412.65 15.07 6.22 6.22 Total: -1.00 -34.78 412.65 -8.85 -43.63 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.70 Total: 3.95 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -3.01 Total: -11.61 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.66 Total: -45.83 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.35 Total: -11.91 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.78 -8.85 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337658182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.748 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds