Wall clock time and date at job start Tue Mar 31 2020 20:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.89882 * 2 1 4 4 N 1.40080 * 108.20344 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03696 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46967 * 90.02364 * 5 4 3 7 7 H 1.08000 * 120.00238 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00327 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00509 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99480 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47082 * 90.00170 * 10 8 6 12 12 H 1.48498 * 109.46846 * 210.00036 * 10 8 6 13 13 H 1.48492 * 109.47345 * 329.99827 * 10 8 6 14 14 C 1.34951 * 107.92649 * 359.75740 * 4 3 2 15 15 C 1.50700 * 126.12519 * 180.23853 * 14 4 3 16 16 C 1.35306 * 107.74429 * 0.39166 * 14 4 3 17 17 C 1.50706 * 126.04096 * 179.87280 * 16 14 4 18 18 C 1.52999 * 109.47090 * 269.71662 * 17 16 14 19 19 C 1.50696 * 109.47088 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00069 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99853 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99726 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.46965 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.47406 * 305.00294 * 23 22 21 25 25 O 1.42901 * 109.47166 * 65.00493 * 23 22 21 26 26 C 1.53004 * 109.47123 * 185.00258 * 23 22 21 27 27 C 1.53002 * 117.49845 * 248.74693 * 26 23 22 28 28 C 1.53003 * 117.49600 * 180.08861 * 26 23 22 29 29 H 1.09003 * 109.47113 * 269.97554 * 1 2 3 30 30 H 1.09000 * 109.47131 * 29.97372 * 1 2 3 31 31 H 1.09003 * 109.47348 * 149.97277 * 1 2 3 32 32 H 1.09000 * 109.47667 * 210.02168 * 5 4 3 33 33 H 1.09004 * 109.47353 * 330.02766 * 5 4 3 34 34 H 0.97008 * 120.00198 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46893 * 270.17807 * 15 14 4 36 36 H 1.08998 * 109.47339 * 30.17681 * 15 14 4 37 37 H 1.09001 * 109.47172 * 150.18283 * 15 14 4 38 38 H 1.08994 * 109.46790 * 29.71060 * 17 16 14 39 39 H 1.08997 * 109.47305 * 149.71501 * 17 16 14 40 40 H 1.09011 * 109.46854 * 299.99717 * 18 17 16 41 41 H 1.09005 * 109.47366 * 59.99142 * 18 17 16 42 42 H 0.96993 * 120.00067 * 0.02562 * 21 19 18 43 43 H 1.08998 * 109.47778 * 300.00034 * 22 21 19 44 44 H 1.09000 * 109.47437 * 60.00559 * 22 21 19 45 45 H 0.96694 * 113.99989 * 59.99618 * 25 23 22 46 46 H 1.08996 * 115.55196 * 34.41938 * 26 23 22 47 47 H 1.09001 * 117.49841 * 359.97438 * 27 26 23 48 48 H 1.09004 * 117.49925 * 145.02124 * 27 26 23 49 49 H 1.09004 * 117.49487 * 214.98001 * 28 26 23 50 50 H 1.08991 * 117.50109 * 359.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1955 1.7964 1.4207 7 1 4.6303 1.3801 2.2414 8 6 6.2883 2.5985 1.6730 9 7 6.6426 2.8561 2.9130 10 14 7.2655 3.3192 0.2534 11 1 6.6957 4.6386 -0.1204 12 1 8.6822 3.4903 0.6642 13 1 7.1955 2.4017 -0.9120 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5989 0.0109 16 6 2.3272 -1.1330 -0.0006 17 6 1.8598 -2.5658 -0.0004 18 6 1.7014 -3.0508 -1.4428 19 6 1.2335 -4.4833 -1.4426 20 8 1.0457 -5.0597 -0.3921 21 7 1.0237 -5.1238 -2.6097 22 6 0.5694 -6.5166 -2.6095 23 6 0.4108 -7.0015 -4.0519 24 1 -0.2548 -6.3273 -4.5908 25 8 1.6888 -7.0210 -4.6911 26 6 -0.1816 -8.4122 -4.0535 27 6 0.7238 -9.5582 -4.5094 28 6 -0.4166 -9.0782 -5.4108 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 5.6091 0.9987 -0.5149 33 1 4.5561 2.4338 -0.5130 34 1 7.4117 3.4201 3.0905 35 1 5.1337 -1.8132 -1.0153 36 1 5.6489 -1.0904 0.5276 37 1 4.6053 -2.5323 0.5248 38 1 2.5934 -3.1871 0.5132 39 1 0.9012 -2.6352 0.5136 40 1 0.9677 -2.4294 -1.9565 41 1 2.6601 -2.9812 -1.9569 42 1 1.1742 -4.6630 -3.4498 43 1 1.3031 -7.1381 -2.0962 44 1 -0.3891 -6.5861 -2.0951 45 1 2.3333 -7.6016 -4.2640 46 1 -0.8978 -8.6222 -3.2591 47 1 1.7414 -9.3071 -4.8087 48 1 0.6030 -10.5222 -4.0153 49 1 -1.2872 -9.7266 -5.5091 50 1 -0.1495 -8.5112 -6.3025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337658182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:38 Heat of formation + Delta-G solvation = -35.126846 kcal Electronic energy + Delta-G solvation = -28230.934129 eV Core-core repulsion = 24258.790275 eV Total energy + Delta-G solvation = -3972.143854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.18252 -40.80451 -39.63035 -36.30796 -36.06945 -35.20574 -34.82846 -34.24348 -32.08233 -30.90915 -30.20373 -28.11236 -27.71811 -25.57031 -24.26440 -23.46992 -23.12651 -21.84933 -20.92568 -20.32469 -20.15095 -19.25370 -18.24425 -17.85689 -17.29829 -17.04513 -16.84130 -16.34319 -16.27539 -15.94666 -15.60248 -14.93965 -14.89517 -14.77307 -14.70604 -14.33650 -14.13768 -14.03874 -13.73391 -13.54575 -13.48770 -13.40253 -13.22664 -13.13199 -12.85241 -12.78451 -12.49843 -12.49290 -12.36082 -12.21189 -11.96442 -11.87583 -11.81568 -11.47195 -11.22949 -11.17101 -10.95661 -10.92422 -10.69262 -10.05918 -9.83184 -9.00967 -8.43003 -6.54296 1.14669 1.31784 1.34926 1.44296 1.72003 1.86992 1.90380 2.24062 2.28013 2.83231 2.89304 3.40802 3.65211 3.76350 3.85923 3.91766 3.98370 4.02184 4.21444 4.22456 4.27236 4.27599 4.35038 4.42676 4.52703 4.59526 4.62840 4.68473 4.73877 4.80274 4.82641 4.84019 4.86684 4.94439 5.03031 5.03934 5.04440 5.13592 5.21866 5.22693 5.28513 5.31421 5.41285 5.49642 5.52698 5.91997 6.06395 6.41450 6.50904 6.58964 6.71432 7.06289 7.10392 7.32403 8.73788 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.001942 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.462270 B =14417.921830 C =15071.493146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 N -0.347 5.347 4 N -0.355 5.355 5 C 0.241 3.759 6 C -0.551 4.551 7 H 0.020 0.980 8 C 0.020 3.980 9 N -0.937 5.937 10 Si 0.953 3.047 11 H -0.266 1.266 12 H -0.273 1.273 13 H -0.234 1.234 14 C 0.080 3.920 15 C -0.090 4.090 16 C -0.257 4.257 17 C -0.005 4.005 18 C -0.124 4.124 19 C 0.516 3.484 20 O -0.584 6.584 21 N -0.718 5.718 22 C 0.093 3.907 23 C 0.138 3.862 24 H 0.114 0.886 25 O -0.566 6.566 26 C -0.196 4.196 27 C -0.177 4.177 28 C -0.170 4.170 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.274 0.726 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.415 0.585 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.386 0.614 46 H 0.116 0.884 47 H 0.105 0.895 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 -23.949 -20.159 33.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 N -0.170 5.170 4 N -0.135 5.135 5 C 0.121 3.879 6 C -0.590 4.590 7 H 0.038 0.962 8 C -0.180 4.180 9 N -0.576 5.576 10 Si 0.774 3.226 11 H -0.191 1.191 12 H -0.198 1.198 13 H -0.157 1.157 14 C -0.049 4.049 15 C -0.148 4.148 16 C -0.269 4.269 17 C -0.044 4.044 18 C -0.164 4.164 19 C 0.304 3.696 20 O -0.464 6.464 21 N -0.370 5.370 22 C -0.032 4.032 23 C 0.078 3.922 24 H 0.131 0.869 25 O -0.374 6.374 26 C -0.215 4.215 27 C -0.214 4.214 28 C -0.207 4.207 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.252 0.748 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.237 0.763 46 H 0.134 0.866 47 H 0.123 0.877 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.482 -22.474 -19.711 32.394 hybrid contribution 0.866 -0.182 0.566 1.050 sum -11.616 -22.655 -19.145 31.854 Atomic orbital electron populations 1.20215 0.84685 1.04028 1.03229 1.22800 0.98171 0.90221 0.99821 1.77194 0.87711 1.24887 1.27212 1.48675 1.05104 1.04987 1.54775 1.19672 0.80948 0.90569 0.96705 1.21270 1.13778 1.32661 0.91255 0.96157 1.25876 0.97656 0.95329 0.99125 1.70040 1.27821 1.38096 1.21618 0.85648 0.77869 0.79890 0.79202 1.19127 1.19768 1.15695 1.21469 0.98302 0.84604 1.00533 1.20524 0.92297 0.97704 1.04238 1.19739 0.90479 0.96552 1.20085 1.19368 1.01204 0.88320 0.95509 1.21620 1.04415 0.91204 0.99144 1.21050 0.76052 0.89311 0.83205 1.90695 1.53289 1.69494 1.32924 1.45867 1.68577 1.13639 1.08935 1.22024 1.00573 0.82478 0.98088 1.21524 0.85246 0.94736 0.90654 0.86867 1.86583 1.22802 1.70607 1.57421 1.23002 1.04753 0.93641 1.00071 1.23069 0.96693 0.98007 1.03587 1.22964 1.00717 1.03399 0.93665 0.90672 0.90873 0.88232 0.91282 0.93862 0.91724 0.88010 0.92219 0.88657 0.91974 0.91321 0.87203 0.87639 0.74791 0.91827 0.91064 0.76315 0.86582 0.87666 0.88167 0.88156 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.12 71.24 0.72 -0.93 16 2 C 0.06 2.03 7.22 43.10 0.31 2.34 16 3 N -0.35 -15.91 12.58 -47.38 -0.60 -16.51 16 4 N -0.36 -16.42 3.60 -338.40 -1.22 -17.64 16 5 C 0.24 11.71 4.88 85.63 0.42 12.13 16 6 C -0.55 -32.37 9.94 25.60 0.25 -32.11 16 7 H 0.02 1.38 8.06 -2.91 -0.02 1.36 16 8 C 0.02 1.13 5.47 84.66 0.46 1.60 16 9 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 10 Si 0.95 41.52 27.47 68.60 1.88 43.41 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 H -0.23 -8.98 6.54 99.48 0.65 -8.33 16 14 C 0.08 3.09 6.93 41.40 0.29 3.38 16 15 C -0.09 -2.77 9.68 71.24 0.69 -2.08 16 16 C -0.26 -8.78 5.35 -20.14 -0.11 -8.89 16 17 C 0.00 -0.13 4.45 29.85 0.13 0.00 16 18 C -0.12 -2.38 5.68 29.85 0.17 -2.21 16 19 C 0.52 10.61 7.83 87.65 0.69 11.29 16 20 O -0.58 -17.05 15.98 -3.03 -0.05 -17.10 16 21 N -0.72 -9.94 5.50 -463.07 -2.55 -12.49 16 22 C 0.09 1.14 5.29 86.38 0.46 1.60 16 23 C 0.14 1.18 3.36 30.60 0.10 1.28 16 24 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 25 O -0.57 -5.48 12.44 -148.98 -1.85 -7.33 16 26 C -0.20 -1.52 5.71 -10.79 -0.06 -1.59 16 27 C -0.18 -1.25 9.74 30.62 0.30 -0.95 16 28 C -0.17 -1.34 10.19 30.62 0.31 -1.03 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.10 1.96 7.92 -2.39 -0.02 1.94 16 32 H 0.07 3.00 6.74 -2.39 -0.02 2.98 16 33 H 0.04 2.08 7.57 -2.38 -0.02 2.06 16 34 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 35 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.12 7.74 -2.39 -0.02 2.10 16 37 H 0.09 2.56 7.14 -2.39 -0.02 2.54 16 38 H 0.06 1.75 7.10 -2.39 -0.02 1.74 16 39 H 0.07 1.86 7.88 -2.39 -0.02 1.84 16 40 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.42 4.02 8.47 -92.71 -0.79 3.23 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.39 2.13 7.56 -74.06 -0.56 1.57 16 46 H 0.12 0.86 8.11 -2.39 -0.02 0.84 16 47 H 0.11 0.63 6.37 -2.39 -0.02 0.61 16 48 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -79.89 412.65 0.61 -79.29 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -0.45 Total: 22.21 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 5.13 Total: -16.18 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -4.06 Total: -104.29 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.90 Total: -24.43 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.41 kcal Total: -79.89 0.61 -79.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337658182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.159 kcal (2) G-P(sol) polarization free energy of solvation -79.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds