Wall clock time and date at job start Tue Mar 31 2020 20:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30833 * 125.89754 * 2 1 4 4 N 1.40084 * 108.20720 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03987 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47102 * 90.02276 * 5 4 3 7 7 H 1.08001 * 120.00006 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99802 * 179.72420 * 6 5 4 9 9 N 1.31515 * 119.99975 * 0.27895 * 8 6 5 10 10 Si 1.86800 * 119.99903 * 180.27936 * 8 6 5 11 11 H 1.48498 * 109.47109 * 89.99947 * 10 8 6 12 12 H 1.48499 * 109.47017 * 210.00367 * 10 8 6 13 13 H 1.48505 * 109.47002 * 329.99841 * 10 8 6 14 14 C 1.34946 * 107.92199 * 0.26536 * 4 3 2 15 15 C 1.50703 * 126.12650 * 179.73516 * 14 4 3 16 16 C 1.35313 * 107.74871 * 359.57737 * 14 4 3 17 17 C 1.50701 * 126.04431 * 180.15728 * 16 14 4 18 18 C 1.52995 * 109.47188 * 270.33625 * 17 16 14 19 19 C 1.50712 * 109.46900 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99830 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99724 * 179.97438 * 19 18 17 22 22 C 1.46501 * 119.99851 * 174.83657 * 21 19 18 23 23 C 1.52995 * 115.55210 * 294.42853 * 22 21 19 24 24 C 1.53002 * 109.46867 * 303.41621 * 23 22 21 25 25 O 1.42900 * 109.47113 * 175.55448 * 24 23 22 26 26 C 1.52997 * 117.49765 * 148.75462 * 22 21 19 27 27 C 1.53007 * 117.49801 * 80.09425 * 22 21 19 28 28 H 1.09003 * 109.47068 * 90.02110 * 1 2 3 29 29 H 1.09001 * 109.46562 * 210.01864 * 1 2 3 30 30 H 1.08993 * 109.47261 * 330.01978 * 1 2 3 31 31 H 1.08999 * 109.47097 * 330.02797 * 5 4 3 32 32 H 1.09004 * 109.47237 * 210.02684 * 5 4 3 33 33 H 0.97006 * 119.99369 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.46949 * 90.02351 * 15 14 4 35 35 H 1.08995 * 109.47181 * 210.02701 * 15 14 4 36 36 H 1.09002 * 109.46813 * 330.02181 * 15 14 4 37 37 H 1.08996 * 109.46724 * 30.33583 * 17 16 14 38 38 H 1.08998 * 109.47052 * 150.33015 * 17 16 14 39 39 H 1.08996 * 109.47253 * 299.99634 * 18 17 16 40 40 H 1.08991 * 109.47381 * 60.00015 * 18 17 16 41 41 H 0.97001 * 120.00142 * 354.83216 * 21 19 18 42 42 H 1.09000 * 109.47240 * 63.41157 * 23 22 21 43 43 H 1.08994 * 109.47313 * 183.41020 * 23 22 21 44 44 H 1.08997 * 109.46770 * 295.54621 * 24 23 22 45 45 H 1.08996 * 109.47701 * 55.55041 * 24 23 22 46 46 H 0.96703 * 114.00100 * 180.02562 * 25 24 23 47 47 H 1.09000 * 117.50187 * 0.02562 * 26 22 21 48 48 H 1.08998 * 117.49970 * 145.02650 * 26 22 21 49 49 H 1.08991 * 117.50036 * 214.97976 * 27 22 21 50 50 H 1.08998 * 117.49551 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0013 6 6 5.1946 1.7973 1.4224 7 1 4.6288 1.3814 2.2429 8 6 6.2908 2.5945 1.6750 9 7 6.9800 3.1006 0.6758 10 14 6.7970 2.9556 3.4364 11 1 7.7553 1.9195 3.8984 12 1 7.4425 4.2914 3.5020 13 1 5.5956 2.9431 4.3092 14 6 3.6143 -0.7153 -0.0050 15 6 4.8351 -1.5988 -0.0121 16 6 2.3272 -1.1330 0.0005 17 6 1.8600 -2.5658 0.0006 18 6 1.7030 -3.0511 -1.4419 19 6 1.2363 -4.4841 -1.4417 20 8 1.0474 -5.0602 -0.3913 21 7 1.0280 -5.1250 -2.6089 22 6 0.6843 -6.5491 -2.6113 23 6 1.7745 -7.4920 -2.0984 24 6 3.0515 -7.2877 -2.9160 25 8 4.0995 -8.0923 -2.3717 26 6 -0.2151 -7.0568 -3.7401 27 6 -0.7698 -6.9254 -2.3195 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3632 -0.8899 0.5141 30 1 -0.3633 0.8901 0.5135 31 1 4.5565 2.4336 -0.5120 32 1 5.6095 0.9985 -0.5126 33 1 7.7515 3.6611 0.8536 34 1 5.1321 -1.8164 1.0138 35 1 4.6063 -2.5305 -0.5296 36 1 5.6499 -1.0885 -0.5259 37 1 2.5930 -3.1869 0.5152 38 1 0.9009 -2.6351 0.5137 39 1 0.9700 -2.4299 -1.9565 40 1 2.6621 -2.9818 -1.9549 41 1 1.1055 -4.6433 -3.4473 42 1 1.9767 -7.2769 -1.0491 43 1 1.4394 -8.5242 -2.1996 44 1 2.8706 -7.5783 -3.9508 45 1 3.3427 -6.2381 -2.8790 46 1 4.9410 -8.0126 -2.8413 47 1 -0.5507 -6.3314 -4.4812 48 1 -0.0303 -8.0627 -4.1171 49 1 -0.9496 -7.8448 -1.7624 50 1 -1.4705 -6.1134 -2.1252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356382344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:42 Heat of formation + Delta-G solvation = -13.191887 kcal Electronic energy + Delta-G solvation = -28875.862655 eV Core-core repulsion = 24904.669973 eV Total energy + Delta-G solvation = -3971.192683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.65966 -40.18868 -38.00864 -36.79162 -34.38399 -33.43716 -32.95093 -32.49101 -30.78667 -30.16490 -28.96819 -26.83401 -25.88007 -24.19926 -23.71830 -22.82763 -22.28043 -20.91684 -19.70025 -18.80578 -18.63455 -17.77866 -17.13031 -16.69837 -16.48080 -15.76146 -15.48842 -15.26173 -14.84952 -14.56860 -14.38314 -14.24993 -13.89264 -13.59855 -13.15713 -12.93509 -12.80411 -12.58710 -12.49301 -12.38348 -12.30379 -12.10634 -11.92338 -11.79949 -11.76380 -11.66043 -11.33996 -11.26330 -11.11030 -10.96965 -10.81113 -10.71846 -10.51950 -10.26930 -10.24941 -9.79246 -9.71762 -9.59489 -9.24895 -8.65464 -8.18721 -7.47796 -6.27250 -4.34431 2.58366 2.72315 2.86212 3.20597 3.27091 3.28789 3.32577 3.39340 3.61103 3.78936 4.29206 4.37962 4.50912 4.63259 4.71516 4.84426 5.01492 5.06559 5.14327 5.18660 5.20096 5.26448 5.33288 5.36899 5.43646 5.54841 5.62006 5.64786 5.71086 5.75967 5.81817 5.90817 5.93410 5.97450 6.01947 6.05963 6.23685 6.31369 6.36804 6.46695 6.54756 6.85251 7.02159 7.11245 7.30858 7.32119 7.51236 7.65792 7.87645 8.05225 8.16149 8.66360 8.75022 9.32088 10.80356 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.002371 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.996588 B =11807.618302 C =12888.719278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.050 3.950 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.269 4.269 17 C -0.010 4.010 18 C -0.133 4.133 19 C 0.516 3.484 20 O -0.527 6.527 21 N -0.710 5.710 22 C 0.106 3.894 23 C -0.090 4.090 24 C 0.081 3.919 25 O -0.575 6.575 26 C -0.175 4.175 27 C -0.165 4.165 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.268 0.732 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.401 0.599 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.047 0.953 46 H 0.380 0.620 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.101 0.899 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.053 -20.304 -12.101 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.197 1.197 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.281 4.281 17 C -0.049 4.049 18 C -0.173 4.173 19 C 0.304 3.696 20 O -0.402 6.402 21 N -0.363 5.363 22 C 0.018 3.982 23 C -0.128 4.128 24 C 0.003 3.997 25 O -0.380 6.380 26 C -0.212 4.212 27 C -0.204 4.204 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.236 0.764 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.227 0.773 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.304 -19.333 -10.948 24.928 hybrid contribution 0.906 0.030 -0.016 0.907 sum -10.398 -19.303 -10.964 24.514 Atomic orbital electron populations 1.20024 0.88071 1.02438 1.01763 1.21944 0.96102 0.90776 1.02580 1.77272 0.87501 1.22678 1.24657 1.49242 1.05773 1.04205 1.51227 1.19651 0.77969 0.89523 0.98927 1.21304 1.12835 1.31841 0.91352 0.91804 1.24927 0.95723 0.95000 0.98148 1.69921 1.18878 1.33188 1.31046 0.86355 0.78824 0.77793 0.83745 1.20287 1.20843 1.19658 1.20775 0.96115 0.85673 1.01234 1.20347 0.93750 0.97107 1.03201 1.19347 0.91338 0.95079 1.22325 1.19383 1.01623 0.90866 0.93036 1.21759 1.02934 0.91127 1.01479 1.21093 0.76264 0.89118 0.83159 1.90698 1.49892 1.68474 1.31115 1.45521 1.72999 1.08511 1.09241 1.20410 0.91470 0.82234 1.04078 1.21190 0.92014 0.98003 1.01638 1.22051 0.87694 0.94115 0.95801 1.86470 1.22773 1.68897 1.59897 1.23384 1.02685 1.02893 0.92251 1.23311 0.95744 1.03689 0.97631 0.91642 0.91241 0.91579 0.93091 0.93123 0.92265 0.90435 0.91139 0.90957 0.91389 0.91261 0.89049 0.89097 0.76352 0.89379 0.90349 0.93851 0.93516 0.77297 0.88207 0.87763 0.88044 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 2 C 0.05 0.95 7.22 -82.40 -0.59 0.36 16 3 N -0.30 -6.83 12.58 33.67 0.42 -6.41 16 4 N -0.32 -7.57 3.60 -58.31 -0.21 -7.78 16 5 C 0.26 6.59 6.00 -5.19 -0.03 6.56 16 6 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 7 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 10 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 15 C -0.09 -1.41 9.72 36.01 0.35 -1.06 16 16 C -0.27 -4.77 5.35 -105.05 -0.56 -5.33 16 17 C -0.01 -0.14 4.41 -27.89 -0.12 -0.27 16 18 C -0.13 -1.46 5.68 -27.88 -0.16 -1.62 16 19 C 0.52 5.85 7.68 -10.98 -0.08 5.77 16 20 O -0.53 -7.99 15.12 5.56 0.08 -7.90 16 21 N -0.71 -5.81 4.87 -47.60 -0.23 -6.04 16 22 C 0.11 0.85 1.66 -131.82 -0.22 0.64 16 23 C -0.09 -0.83 5.41 -26.73 -0.14 -0.97 16 24 C 0.08 0.67 6.97 37.16 0.26 0.93 16 25 O -0.57 -5.35 13.66 -35.23 -0.48 -5.83 16 26 C -0.17 -0.98 10.16 -26.69 -0.27 -1.25 16 27 C -0.17 -1.27 10.18 -26.69 -0.27 -1.54 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.86 7.25 -51.93 -0.38 0.49 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.05 1.28 7.04 -51.93 -0.37 0.92 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 0.93 7.79 -51.93 -0.40 0.53 16 36 H 0.07 1.21 7.08 -51.93 -0.37 0.84 16 37 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 38 H 0.07 1.00 7.21 -51.93 -0.37 0.63 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 42 H 0.09 1.09 7.33 -51.93 -0.38 0.71 16 43 H 0.08 0.65 8.10 -51.93 -0.42 0.22 16 44 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.05 0.39 7.70 -51.93 -0.40 -0.01 16 46 H 0.38 1.83 9.12 45.56 0.42 2.24 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 417.34 15.07 6.29 6.29 Total: -1.00 -34.35 417.34 -8.52 -42.87 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.63 Total: 3.49 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.47 Total: -10.53 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.72 Total: -44.64 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.40 Total: -13.73 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.35 -8.52 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356382344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.676 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds