Wall clock time and date at job start Tue Mar 31 2020 20:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30833 * 125.89754 * 2 1 4 4 N 1.40084 * 108.20720 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03987 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47102 * 90.02276 * 5 4 3 7 7 H 1.08001 * 120.00006 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99802 * 179.72420 * 6 5 4 9 9 N 1.31515 * 119.99975 * 0.27895 * 8 6 5 10 10 Si 1.86800 * 119.99903 * 180.27936 * 8 6 5 11 11 H 1.48498 * 109.47109 * 89.99947 * 10 8 6 12 12 H 1.48499 * 109.47017 * 210.00367 * 10 8 6 13 13 H 1.48505 * 109.47002 * 329.99841 * 10 8 6 14 14 C 1.34946 * 107.92199 * 0.26536 * 4 3 2 15 15 C 1.50703 * 126.12650 * 179.73516 * 14 4 3 16 16 C 1.35313 * 107.74871 * 359.57737 * 14 4 3 17 17 C 1.50701 * 126.04431 * 180.15728 * 16 14 4 18 18 C 1.52995 * 109.47188 * 270.33625 * 17 16 14 19 19 C 1.50712 * 109.46900 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99830 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99724 * 179.97438 * 19 18 17 22 22 C 1.46501 * 119.99851 * 174.83657 * 21 19 18 23 23 C 1.52995 * 115.55210 * 294.42853 * 22 21 19 24 24 C 1.53002 * 109.46867 * 303.41621 * 23 22 21 25 25 O 1.42900 * 109.47113 * 175.55448 * 24 23 22 26 26 C 1.52997 * 117.49765 * 148.75462 * 22 21 19 27 27 C 1.53007 * 117.49801 * 80.09425 * 22 21 19 28 28 H 1.09003 * 109.47068 * 90.02110 * 1 2 3 29 29 H 1.09001 * 109.46562 * 210.01864 * 1 2 3 30 30 H 1.08993 * 109.47261 * 330.01978 * 1 2 3 31 31 H 1.08999 * 109.47097 * 330.02797 * 5 4 3 32 32 H 1.09004 * 109.47237 * 210.02684 * 5 4 3 33 33 H 0.97006 * 119.99369 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.46949 * 90.02351 * 15 14 4 35 35 H 1.08995 * 109.47181 * 210.02701 * 15 14 4 36 36 H 1.09002 * 109.46813 * 330.02181 * 15 14 4 37 37 H 1.08996 * 109.46724 * 30.33583 * 17 16 14 38 38 H 1.08998 * 109.47052 * 150.33015 * 17 16 14 39 39 H 1.08996 * 109.47253 * 299.99634 * 18 17 16 40 40 H 1.08991 * 109.47381 * 60.00015 * 18 17 16 41 41 H 0.97001 * 120.00142 * 354.83216 * 21 19 18 42 42 H 1.09000 * 109.47240 * 63.41157 * 23 22 21 43 43 H 1.08994 * 109.47313 * 183.41020 * 23 22 21 44 44 H 1.08997 * 109.46770 * 295.54621 * 24 23 22 45 45 H 1.08996 * 109.47701 * 55.55041 * 24 23 22 46 46 H 0.96703 * 114.00100 * 180.02562 * 25 24 23 47 47 H 1.09000 * 117.50187 * 0.02562 * 26 22 21 48 48 H 1.08998 * 117.49970 * 145.02650 * 26 22 21 49 49 H 1.08991 * 117.50036 * 214.97976 * 27 22 21 50 50 H 1.08998 * 117.49551 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0013 6 6 5.1946 1.7973 1.4224 7 1 4.6288 1.3814 2.2429 8 6 6.2908 2.5945 1.6750 9 7 6.9800 3.1006 0.6758 10 14 6.7970 2.9556 3.4364 11 1 7.7553 1.9195 3.8984 12 1 7.4425 4.2914 3.5020 13 1 5.5956 2.9431 4.3092 14 6 3.6143 -0.7153 -0.0050 15 6 4.8351 -1.5988 -0.0121 16 6 2.3272 -1.1330 0.0005 17 6 1.8600 -2.5658 0.0006 18 6 1.7030 -3.0511 -1.4419 19 6 1.2363 -4.4841 -1.4417 20 8 1.0474 -5.0602 -0.3913 21 7 1.0280 -5.1250 -2.6089 22 6 0.6843 -6.5491 -2.6113 23 6 1.7745 -7.4920 -2.0984 24 6 3.0515 -7.2877 -2.9160 25 8 4.0995 -8.0923 -2.3717 26 6 -0.2151 -7.0568 -3.7401 27 6 -0.7698 -6.9254 -2.3195 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3632 -0.8899 0.5141 30 1 -0.3633 0.8901 0.5135 31 1 4.5565 2.4336 -0.5120 32 1 5.6095 0.9985 -0.5126 33 1 7.7515 3.6611 0.8536 34 1 5.1321 -1.8164 1.0138 35 1 4.6063 -2.5305 -0.5296 36 1 5.6499 -1.0885 -0.5259 37 1 2.5930 -3.1869 0.5152 38 1 0.9009 -2.6351 0.5137 39 1 0.9700 -2.4299 -1.9565 40 1 2.6621 -2.9818 -1.9549 41 1 1.1055 -4.6433 -3.4473 42 1 1.9767 -7.2769 -1.0491 43 1 1.4394 -8.5242 -2.1996 44 1 2.8706 -7.5783 -3.9508 45 1 3.3427 -6.2381 -2.8790 46 1 4.9410 -8.0126 -2.8413 47 1 -0.5507 -6.3314 -4.4812 48 1 -0.0303 -8.0627 -4.1171 49 1 -0.9496 -7.8448 -1.7624 50 1 -1.4705 -6.1134 -2.1252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356382344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:41 Heat of formation + Delta-G solvation = -37.547838 kcal Electronic energy + Delta-G solvation = -28876.918809 eV Core-core repulsion = 24904.669973 eV Total energy + Delta-G solvation = -3972.248836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.16204 -41.01660 -38.76406 -37.43600 -36.08913 -34.83948 -34.20652 -33.80281 -31.67242 -31.36424 -30.48347 -28.15251 -27.62340 -25.52502 -24.42598 -24.01396 -23.29922 -21.76427 -20.44973 -20.30878 -20.12606 -18.83159 -18.42658 -17.98863 -17.28833 -17.11134 -16.55429 -16.26947 -16.08815 -15.86837 -15.50783 -15.11523 -14.90182 -14.74988 -14.61459 -14.39003 -14.07719 -13.87626 -13.68102 -13.40510 -13.35712 -13.26238 -13.13864 -13.07523 -12.86077 -12.75125 -12.63453 -12.59181 -12.44387 -12.36322 -12.24179 -11.85867 -11.72617 -11.71765 -11.19768 -11.15105 -10.90945 -10.75942 -10.57553 -9.95936 -9.84517 -9.02864 -8.36096 -6.53690 1.16863 1.34583 1.35668 1.47089 1.72477 1.87158 1.93790 2.21177 2.32149 2.75016 2.93365 3.23171 3.78033 3.84857 3.89599 3.93539 3.96571 4.14447 4.22468 4.23394 4.26440 4.34457 4.39849 4.53220 4.56945 4.64149 4.71657 4.72342 4.77147 4.81886 4.86020 4.86801 4.91098 4.96704 4.98466 5.02928 5.03183 5.13463 5.15837 5.22909 5.31787 5.44335 5.49355 5.55606 5.65996 5.79319 6.05313 6.31161 6.61308 6.62829 6.88533 7.11229 7.17696 7.37539 8.69890 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.002371 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.996588 B =11807.618302 C =12888.719278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.970 3.030 11 H -0.264 1.264 12 H -0.272 1.272 13 H -0.277 1.277 14 C 0.078 3.922 15 C -0.082 4.082 16 C -0.257 4.257 17 C -0.003 4.003 18 C -0.124 4.124 19 C 0.519 3.481 20 O -0.571 6.571 21 N -0.693 5.693 22 C 0.087 3.913 23 C -0.088 4.088 24 C 0.082 3.918 25 O -0.599 6.599 26 C -0.141 4.141 27 C -0.181 4.181 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.019 0.981 32 H 0.047 0.953 33 H 0.274 0.726 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.417 0.583 42 H 0.048 0.952 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.042 0.958 46 H 0.397 0.603 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.100 0.900 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 -22.012 -13.402 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.064 0.936 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.189 1.189 12 H -0.197 1.197 13 H -0.202 1.202 14 C -0.052 4.052 15 C -0.140 4.140 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.164 4.164 19 C 0.307 3.693 20 O -0.449 6.449 21 N -0.345 5.345 22 C -0.001 4.001 23 C -0.127 4.127 24 C 0.005 3.995 25 O -0.408 6.408 26 C -0.178 4.178 27 C -0.219 4.219 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.247 0.753 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.118 0.882 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.202 -21.060 -12.310 27.276 hybrid contribution 1.100 0.476 0.346 1.247 sum -11.102 -20.584 -11.964 26.270 Atomic orbital electron populations 1.20211 0.84670 1.03393 1.03821 1.22786 0.98138 0.90169 0.99957 1.77207 0.87802 1.25029 1.27355 1.49000 1.05340 1.05151 1.54055 1.19124 0.79036 0.88745 0.97480 1.21423 1.13275 1.32588 0.91849 0.93608 1.25732 0.95438 0.94439 1.02247 1.70000 1.19220 1.33401 1.32963 0.85376 0.78334 0.78303 0.78609 1.18863 1.19702 1.20234 1.21442 0.98164 0.84679 1.00875 1.20429 0.92328 0.97870 1.03401 1.19710 0.90343 0.96501 1.20323 1.19340 1.01175 0.88322 0.95401 1.21631 1.04236 0.91254 0.99298 1.21059 0.75832 0.89060 0.83334 1.90695 1.52074 1.69341 1.32805 1.45321 1.71492 1.08722 1.09013 1.20472 0.91345 0.81719 1.06556 1.21137 0.93242 0.98731 0.99563 1.22084 0.86924 0.93811 0.96695 1.86426 1.24101 1.69219 1.61026 1.23487 0.99186 1.03971 0.91180 1.23345 0.95236 1.03505 0.99846 0.88922 0.89116 0.91752 0.96245 0.93476 0.91705 0.90716 0.87643 0.91759 0.92165 0.91175 0.87195 0.87885 0.74522 0.93325 0.89661 0.91348 0.93920 0.75281 0.86444 0.86120 0.88196 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.64 10.26 71.24 0.73 -0.91 16 2 C 0.05 2.02 7.22 43.11 0.31 2.33 16 3 N -0.35 -16.49 12.58 -47.38 -0.60 -17.08 16 4 N -0.36 -17.13 3.60 -338.40 -1.22 -18.35 16 5 C 0.28 14.82 6.00 85.63 0.51 15.34 16 6 C -0.55 -31.76 9.39 25.60 0.24 -31.52 16 7 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 8 C 0.02 1.25 5.46 84.65 0.46 1.71 16 9 N -0.92 -52.53 13.29 21.45 0.28 -52.24 16 10 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 C 0.08 3.10 6.93 41.41 0.29 3.39 16 15 C -0.08 -2.68 9.72 71.24 0.69 -1.98 16 16 C -0.26 -8.91 5.35 -20.14 -0.11 -9.01 16 17 C 0.00 -0.09 4.41 29.85 0.13 0.04 16 18 C -0.12 -2.43 5.68 29.85 0.17 -2.26 16 19 C 0.52 10.87 7.68 87.66 0.67 11.54 16 20 O -0.57 -17.01 15.12 -3.03 -0.05 -17.06 16 21 N -0.69 -9.67 4.87 -422.91 -2.06 -11.73 16 22 C 0.09 1.22 1.66 3.60 0.01 1.23 16 23 C -0.09 -1.54 5.41 30.59 0.17 -1.37 16 24 C 0.08 1.20 6.97 71.98 0.50 1.70 16 25 O -0.60 -10.43 13.66 -148.98 -2.03 -12.46 16 26 C -0.14 -1.10 10.16 30.62 0.31 -0.79 16 27 C -0.18 -2.48 10.18 30.62 0.31 -2.17 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 2.01 7.25 -2.39 -0.02 1.99 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 2.51 7.04 -2.39 -0.02 2.49 16 33 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.11 2.61 7.79 -2.39 -0.02 2.59 16 36 H 0.06 2.18 7.08 -2.39 -0.02 2.16 16 37 H 0.06 1.74 7.75 -2.39 -0.02 1.72 16 38 H 0.07 1.90 7.21 -2.39 -0.02 1.89 16 39 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.42 3.23 8.83 -92.71 -0.82 2.41 16 42 H 0.05 1.23 7.33 -2.39 -0.02 1.22 16 43 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.04 0.64 7.70 -2.39 -0.02 0.62 16 46 H 0.40 3.25 9.12 -74.06 -0.68 2.58 16 47 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -77.93 417.34 1.22 -76.71 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.54 Total: 18.98 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.40 Total: -12.73 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -3.59 Total: -99.41 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -2.08 Total: -29.52 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -77.93 1.22 -76.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356382344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.161 kcal (2) G-P(sol) polarization free energy of solvation -77.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds