Wall clock time and date at job start Tue Mar 31 2020 20:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00228 * 2 1 4 4 H 1.08994 * 110.88297 * 32.42890 * 3 2 1 5 5 C 1.55159 * 111.00049 * 268.54789 * 3 2 1 6 6 C 1.54324 * 102.94134 * 206.38348 * 5 3 2 7 7 N 1.47020 * 107.39983 * 22.11770 * 6 5 3 8 8 C 1.34780 * 125.64983 * 181.10309 * 7 6 5 9 9 O 1.21276 * 120.00190 * 180.02562 * 8 7 6 10 10 C 1.50704 * 119.99770 * 0.02562 * 8 7 6 11 11 C 1.52998 * 109.47111 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47111 * 179.97438 * 11 10 8 13 13 C 1.39873 * 126.03397 * 90.02597 * 12 11 10 14 14 C 1.50700 * 125.90516 * 359.95825 * 13 12 11 15 15 N 1.30843 * 108.20002 * 179.97438 * 13 12 11 16 16 N 1.40087 * 108.20140 * 0.02562 * 15 13 12 17 17 C 1.46503 * 126.03505 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47322 * 90.02038 * 17 16 15 19 19 H 1.08000 * 119.99911 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00307 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00107 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99568 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47369 * 90.00022 * 22 20 18 24 24 H 1.48506 * 109.46695 * 209.99932 * 22 20 18 25 25 H 1.48501 * 109.47213 * 329.99414 * 22 20 18 26 26 C 1.34941 * 107.92701 * 359.75543 * 16 15 13 27 27 C 1.50707 * 126.12756 * 180.23956 * 26 16 15 28 28 C 1.47743 * 108.53125 * 1.18235 * 7 6 5 29 29 H 1.08997 * 109.47164 * 59.99709 * 1 2 3 30 30 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46905 * 299.99962 * 1 2 3 32 32 H 1.09004 * 110.72010 * 88.02138 * 5 3 2 33 33 H 1.08995 * 110.87585 * 324.81986 * 5 3 2 34 34 H 1.09002 * 109.88322 * 141.61300 * 6 5 3 35 35 H 1.09000 * 109.88025 * 262.62465 * 6 5 3 36 36 H 1.08992 * 109.47408 * 300.00360 * 10 8 7 37 37 H 1.09005 * 109.47188 * 60.00318 * 10 8 7 38 38 H 1.09002 * 109.47237 * 299.99989 * 11 10 8 39 39 H 1.08997 * 109.46937 * 60.00419 * 11 10 8 40 40 H 1.09001 * 109.46656 * 89.99800 * 14 13 12 41 41 H 1.09001 * 109.47048 * 210.00061 * 14 13 12 42 42 H 1.08994 * 109.46687 * 330.00251 * 14 13 12 43 43 H 1.08997 * 109.47268 * 210.02172 * 17 16 15 44 44 H 1.09005 * 109.47083 * 330.02629 * 17 16 15 45 45 H 0.97000 * 119.99914 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.46949 * 270.18455 * 27 26 16 47 47 H 1.09002 * 109.46965 * 30.17881 * 27 26 16 48 48 H 1.09000 * 109.47302 * 150.17783 * 27 26 16 49 49 H 1.09003 * 110.29227 * 216.94505 * 28 7 6 50 50 H 1.08996 * 110.53057 * 94.67717 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3831 2.0100 0.5461 5 6 2.2700 1.7985 -1.4481 6 6 3.4387 2.7906 -1.2710 7 7 4.1195 2.4481 -0.0138 8 6 5.1807 3.0958 0.5067 9 8 5.6639 2.7238 1.5550 10 6 5.7668 4.2825 -0.2140 11 6 6.9523 4.8293 0.5838 12 6 7.5387 6.0156 -0.1372 13 6 7.1617 7.3515 0.0343 14 6 6.0961 7.8555 0.9732 15 7 7.8938 8.0882 -0.7615 16 7 8.7607 7.2429 -1.4660 17 6 9.7511 7.6600 -2.4616 18 6 11.0631 7.9442 -1.7767 19 1 11.1505 7.8254 -0.7068 20 6 12.1521 8.3547 -2.5160 21 7 13.2971 8.6021 -1.9183 22 14 12.0010 8.5594 -4.3666 23 1 11.5791 9.9486 -4.6782 24 1 13.3144 8.2862 -5.0037 25 1 10.9896 7.6058 -4.8892 26 6 8.5265 5.9771 -1.0612 27 6 9.2358 4.7415 -1.5525 28 6 3.4462 1.2748 0.5803 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.3909 2.3053 -1.8464 33 1 2.5616 0.9704 -2.0939 34 1 4.1333 2.6981 -2.1059 35 1 3.0552 3.8097 -1.2191 36 1 6.1049 3.9758 -1.2038 37 1 5.0076 5.0584 -0.3137 38 1 6.6136 5.1361 1.5734 39 1 7.7115 4.0537 0.6839 40 1 6.5422 8.0800 1.9421 41 1 5.6471 8.7595 0.5616 42 1 5.3283 7.0915 1.0949 43 1 9.8882 6.8640 -3.1934 44 1 9.4020 8.5611 -2.9660 45 1 14.0632 8.8913 -2.4384 46 1 8.7066 4.3378 -2.4158 47 1 10.2558 4.9978 -1.8389 48 1 9.2580 3.9952 -0.7583 49 1 3.4185 1.3646 1.6663 50 1 3.9535 0.3550 0.2893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361027867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:01 Heat of formation + Delta-G solvation = -16.356871 kcal Electronic energy + Delta-G solvation = -28773.580136 eV Core-core repulsion = 24802.250210 eV Total energy + Delta-G solvation = -3971.329927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74323 -40.30592 -38.69007 -36.63412 -34.47678 -33.39751 -32.49269 -31.51713 -30.44999 -29.49289 -29.17566 -27.17712 -26.48099 -26.10233 -24.37299 -23.02518 -21.88311 -21.53618 -19.42490 -18.86971 -18.68760 -17.63848 -17.35278 -17.12632 -16.01264 -15.73486 -15.59946 -15.43433 -15.13679 -14.71375 -14.60796 -14.02165 -13.87487 -13.57485 -13.32245 -13.16413 -13.00779 -12.88948 -12.65565 -12.56995 -12.42995 -12.26349 -12.18189 -12.04578 -11.99318 -11.92495 -11.84920 -11.51847 -11.29850 -11.19696 -10.97350 -10.75649 -10.74584 -10.23619 -10.13755 -9.95164 -9.69259 -9.66653 -8.94148 -8.79926 -8.24333 -7.52732 -6.27648 -4.30994 2.48824 2.54606 2.69572 3.13605 3.19189 3.20921 3.28773 3.36905 3.48847 3.98722 4.09980 4.19665 4.44190 4.58534 4.72538 4.76548 4.86618 4.91558 4.99277 5.13727 5.16956 5.19862 5.22080 5.27382 5.28819 5.31489 5.44767 5.47082 5.53098 5.61919 5.68443 5.81222 5.90851 5.91695 5.93354 5.96051 6.00881 6.20164 6.31636 6.35088 6.43937 6.50023 6.62921 6.80218 6.92984 7.24161 7.27439 7.41691 7.85133 8.03506 8.29985 8.58630 8.78007 9.27402 10.84840 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.002130 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.601991 B =13142.139855 C =13522.068024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.074 3.926 4 H 0.080 0.920 5 C -0.156 4.156 6 C 0.102 3.898 7 N -0.625 5.625 8 C 0.531 3.469 9 O -0.534 6.534 10 C -0.127 4.127 11 C -0.012 4.012 12 C -0.265 4.265 13 C 0.054 3.946 14 C -0.064 4.064 15 N -0.294 5.294 16 N -0.325 5.325 17 C 0.230 3.770 18 C -0.542 4.542 19 H 0.080 0.920 20 C 0.079 3.921 21 N -0.885 5.885 22 Si 0.874 3.126 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.265 1.265 26 C 0.098 3.902 27 C -0.094 4.094 28 C 0.111 3.889 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.045 0.955 45 H 0.269 0.731 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.962 -15.257 -0.002 30.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C 0.015 3.985 4 H 0.097 0.903 5 C -0.194 4.194 6 C -0.021 4.021 7 N -0.362 5.362 8 C 0.322 3.678 9 O -0.410 6.410 10 C -0.167 4.167 11 C -0.051 4.051 12 C -0.277 4.277 13 C -0.110 4.110 14 C -0.123 4.123 15 N -0.118 5.118 16 N -0.104 5.104 17 C 0.111 3.889 18 C -0.580 4.580 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.522 5.522 22 Si 0.700 3.300 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.189 1.189 26 C -0.033 4.033 27 C -0.152 4.152 28 C -0.011 4.011 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.928 -14.253 0.032 28.715 hybrid contribution -0.231 -0.296 -0.900 0.975 sum -25.158 -14.549 -0.868 29.075 Atomic orbital electron populations 1.22820 0.80448 1.03079 1.00205 1.87893 1.20117 1.26485 1.94886 1.23244 0.94497 0.85173 0.95584 0.90254 1.23168 0.98399 0.99805 0.98000 1.21990 0.94203 0.99005 0.86932 1.48535 1.31879 1.31683 1.24134 1.20783 0.77993 0.83895 0.85160 1.90715 1.59794 1.67250 1.23256 1.21730 0.99734 0.94665 1.00554 1.19428 0.94798 0.94050 0.96845 1.19348 1.05878 0.94567 1.07888 1.21975 0.98575 0.91783 0.98701 1.20033 0.94805 1.00743 0.96734 1.77274 1.06015 1.17844 1.10621 1.48789 1.27650 1.03015 1.30984 1.19968 0.86241 0.96792 0.85909 1.21173 0.92231 1.47717 0.96850 0.90144 1.24819 0.94892 0.94246 0.98591 1.69874 1.01468 1.44635 1.36251 0.86887 0.78191 0.79466 0.85434 1.19628 1.20528 1.18943 1.20756 0.97127 0.88001 0.97429 1.20436 1.00867 0.92788 1.01088 1.22045 0.90473 0.89527 0.99100 0.93818 0.89318 0.93771 0.89811 0.89372 0.90688 0.90855 0.89030 0.89025 0.91117 0.91198 0.91197 0.91585 0.91407 0.93506 0.93721 0.92106 0.91284 0.89882 0.90393 0.89731 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.89 101.05 1.10 1.24 16 2 O -0.38 -2.83 10.52 -35.23 -0.37 -3.20 16 3 C 0.07 0.50 3.49 -24.58 -0.09 0.41 16 4 H 0.08 0.46 7.90 -51.93 -0.41 0.05 16 5 C -0.16 -0.84 6.69 -24.90 -0.17 -1.01 16 6 C 0.10 0.67 6.48 -3.06 -0.02 0.65 16 7 N -0.62 -6.03 3.34 -170.26 -0.57 -6.59 16 8 C 0.53 6.55 7.85 -10.98 -0.09 6.47 16 9 O -0.53 -8.58 16.25 5.56 0.09 -8.49 16 10 C -0.13 -1.44 4.87 -27.88 -0.14 -1.58 16 11 C -0.01 -0.18 4.45 -27.88 -0.12 -0.30 16 12 C -0.26 -4.65 5.35 -105.05 -0.56 -5.21 16 13 C 0.05 1.02 7.22 -82.40 -0.59 0.42 16 14 C -0.06 -0.90 10.12 36.01 0.36 -0.53 16 15 N -0.29 -6.61 12.58 33.67 0.42 -6.19 16 16 N -0.33 -7.38 3.60 -58.31 -0.21 -7.59 16 17 C 0.23 5.51 4.88 -5.19 -0.03 5.49 16 18 C -0.54 -15.20 9.94 -34.44 -0.34 -15.54 16 19 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 22 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 26 C 0.10 1.90 6.93 -82.27 -0.57 1.33 16 27 C -0.09 -1.50 9.68 36.01 0.35 -1.15 16 28 C 0.11 1.00 6.66 -2.35 -0.02 0.98 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.17 8.11 -51.93 -0.42 -0.26 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 39 H 0.07 1.04 7.09 -51.93 -0.37 0.68 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 43 H 0.05 1.04 6.73 -51.93 -0.35 0.69 16 44 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 48 H 0.08 1.10 7.14 -51.93 -0.37 0.73 16 49 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 409.64 15.07 6.17 6.17 Total: -1.00 -34.67 409.64 -7.99 -42.66 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.62 Total: -0.43 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.01 Total: -6.23 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.42 Total: -45.97 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.28 Total: -11.68 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.67 -7.99 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361027867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.299 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds